Wall clock time and date at job start Tue Mar 31 2020 15:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47402 * 2 1 4 4 H 1.08997 * 109.50356 * 304.93787 * 3 2 1 5 5 C 1.53201 * 109.49765 * 65.00138 * 3 2 1 6 6 N 1.46920 * 108.89321 * 174.54574 * 5 3 2 7 7 C 1.34776 * 120.62904 * 126.46299 * 6 5 3 8 8 O 1.21279 * 120.00153 * 175.46399 * 7 6 5 9 9 C 1.50703 * 120.00246 * 355.46035 * 7 6 5 10 10 C 1.53005 * 112.84386 * 75.81975 * 9 7 6 11 11 F 1.39899 * 109.47312 * 305.78098 * 10 9 7 12 12 F 1.39901 * 109.46908 * 65.78527 * 10 9 7 13 13 C 1.53779 * 113.61423 * 304.52284 * 9 7 6 14 14 C 1.53788 * 87.07757 * 220.01263 * 13 9 7 15 15 C 1.53776 * 113.61633 * 207.01859 * 9 7 6 16 16 C 1.46962 * 118.71807 * 306.64253 * 6 5 3 17 17 C 1.53194 * 108.88868 * 53.35837 * 16 6 5 18 18 C 1.53039 * 109.30955 * 305.44268 * 17 16 6 19 19 H 1.09005 * 109.45128 * 301.35114 * 18 17 16 20 20 N 1.46502 * 109.46283 * 181.38830 * 18 17 16 21 21 C 1.36928 * 120.00180 * 84.92781 * 20 18 17 22 22 H 1.08001 * 120.00143 * 0.02562 * 21 20 18 23 23 C 1.38814 * 119.99943 * 180.02562 * 21 20 18 24 24 N 1.31611 * 120.00184 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99864 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47147 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47012 * 119.99838 * 25 23 21 28 28 H 1.48495 * 109.47296 * 239.99719 * 25 23 21 29 29 H 1.08994 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46902 * 300.00090 * 1 2 3 31 31 H 1.08999 * 109.47084 * 59.99835 * 1 2 3 32 32 H 1.09000 * 109.46902 * 239.99910 * 2 1 3 33 33 H 1.09001 * 109.46931 * 120.00687 * 2 1 3 34 34 H 1.08997 * 109.58275 * 294.41013 * 5 3 2 35 35 H 1.08999 * 109.57989 * 54.68810 * 5 3 2 36 36 H 1.09006 * 109.46990 * 185.78361 * 10 9 7 37 37 H 1.09007 * 113.61215 * 334.55625 * 13 9 7 38 38 H 1.08993 * 113.62094 * 105.46378 * 13 9 7 39 39 H 1.08993 * 113.61069 * 270.88029 * 14 13 9 40 40 H 1.09000 * 113.68796 * 139.98517 * 14 13 9 41 41 H 1.09001 * 113.61077 * 254.52730 * 15 9 7 42 42 H 1.08995 * 113.61815 * 25.43447 * 15 9 7 43 43 H 1.08993 * 109.46704 * 293.57184 * 16 6 5 44 44 H 1.09007 * 109.71416 * 173.28462 * 16 6 5 45 45 H 1.08993 * 109.49819 * 185.49546 * 17 16 6 46 46 H 1.08997 * 109.49553 * 65.39227 * 17 16 6 47 47 H 0.97005 * 119.99257 * 264.93612 * 20 18 17 48 48 H 0.97005 * 120.00377 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6351 2.1279 1.3089 6 7 2.2411 3.4656 1.3526 7 6 1.4808 4.5572 1.5691 8 8 2.0021 5.6460 1.6850 9 6 -0.0172 4.4247 1.6673 10 6 -0.4753 3.8378 3.0040 11 9 0.1798 2.6222 3.2286 12 9 -0.1672 4.7312 4.0356 13 6 -0.6572 3.7481 0.4437 14 6 -1.7929 4.7778 0.5670 15 6 -0.7762 5.6991 1.2615 16 6 3.6916 3.5906 1.1516 17 6 4.0734 2.8888 -0.1555 18 6 3.5656 1.4456 -0.1221 19 1 3.9994 0.9278 0.7335 20 7 3.9578 0.7613 -1.3567 21 6 5.1963 0.1861 -1.4569 22 1 5.8840 0.2364 -0.6256 23 6 5.5681 -0.4618 -2.6269 24 7 4.7300 -0.5235 -3.6398 25 14 7.2575 -1.2471 -2.7633 26 1 8.0034 -1.0401 -1.4961 27 1 7.1077 -2.7025 -3.0180 28 1 8.0046 -0.6228 -3.8846 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5497 2.2168 1.3542 35 1 1.9891 1.5385 2.1547 36 1 -1.5521 3.6708 2.9775 37 1 -0.0708 3.8522 -0.4693 38 1 -0.9759 2.7224 0.6287 39 1 -2.6057 4.4553 1.2177 40 1 -2.1441 5.1594 -0.3918 41 1 -1.1909 6.2481 2.1069 42 1 -0.2224 6.3364 0.5722 43 1 4.2154 3.1220 1.9845 44 1 3.9654 4.6442 1.0941 45 1 5.1578 2.8904 -0.2659 46 1 3.6208 3.4144 -0.9963 47 1 3.3400 0.7159 -2.1032 48 1 4.9896 -0.9766 -4.4573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037913552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:58 Heat of formation + Delta-G solvation = -105.260571 kcal Electronic energy + Delta-G solvation = -31267.577140 eV Core-core repulsion = 26994.044492 eV Total energy + Delta-G solvation = -4273.532648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.32075 -47.29100 -40.86322 -38.64359 -37.48135 -34.60482 -33.74766 -31.93830 -29.93628 -28.70278 -28.47033 -26.19549 -25.39600 -24.76394 -23.68312 -22.70039 -21.00553 -20.20879 -19.87683 -18.72524 -18.18675 -17.47347 -17.35528 -17.07519 -16.13088 -16.02453 -15.08607 -14.94094 -14.85249 -14.32052 -14.17777 -14.01449 -13.81676 -13.56503 -13.39234 -13.21324 -13.09058 -12.89793 -12.79375 -12.63287 -12.41672 -12.19115 -11.95705 -11.83059 -11.61224 -11.46185 -11.32941 -10.92908 -10.86951 -10.81370 -10.73897 -10.62937 -10.35170 -10.22766 -10.15521 -9.77303 -9.70745 -9.47338 -8.90954 -8.44599 -6.97212 -5.79202 -3.07412 2.48211 2.98725 3.39386 3.41486 3.47997 3.49527 3.70819 3.79059 4.02689 4.29851 4.36032 4.56887 4.60317 4.80869 4.86116 5.01776 5.15919 5.26229 5.28301 5.37249 5.44279 5.50973 5.54103 5.54596 5.58736 5.60143 5.63331 5.64769 5.75776 5.80965 5.92825 6.01714 6.07403 6.12781 6.26170 6.34668 6.37381 6.46366 6.51776 6.67800 6.83840 6.92138 7.05368 7.50208 7.68998 8.17320 8.39192 9.51034 10.07943 10.43069 11.43367 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.003564 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.571627 B = 7853.905199 C = 8260.715151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.106 4.106 4 H 0.069 0.931 5 C 0.105 3.895 6 N -0.595 5.595 7 C 0.530 3.470 8 O -0.538 6.538 9 C -0.171 4.171 10 C 0.291 3.709 11 F -0.193 7.193 12 F -0.195 7.195 13 C -0.118 4.118 14 C -0.146 4.146 15 C -0.100 4.100 16 C 0.112 3.888 17 C -0.149 4.149 18 C 0.183 3.817 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.501 7.944 11.445 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.127 4.127 4 H 0.087 0.913 5 C -0.017 4.017 6 N -0.326 5.326 7 C 0.316 3.684 8 O -0.415 6.415 9 C -0.175 4.175 10 C 0.237 3.763 11 F -0.174 7.174 12 F -0.177 7.177 13 C -0.155 4.155 14 C -0.184 4.184 15 C -0.138 4.138 16 C -0.011 4.011 17 C -0.190 4.190 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.360 5.360 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.989 8.418 11.563 21.452 hybrid contribution 1.028 -0.594 -0.320 1.230 sum -14.961 7.825 11.242 20.284 Atomic orbital electron populations 1.21867 0.96993 1.01268 1.00860 1.21455 0.94216 0.95781 1.03650 1.21832 0.97934 0.96246 0.96640 0.91272 1.22390 0.99092 0.82085 0.98181 1.48089 1.08508 1.06661 1.69352 1.19789 0.87419 0.84225 0.76920 1.90677 1.73866 1.26505 1.50470 1.23287 0.94988 1.02893 0.96312 1.21475 0.96890 0.74433 0.83523 1.93019 1.83987 1.45311 1.95050 1.93023 1.94959 1.68645 1.61029 1.23094 0.97006 0.99245 0.96185 1.22992 0.96515 0.96815 1.02032 1.22747 0.95753 0.94061 1.01204 1.21741 0.78752 1.02048 0.98540 1.22664 1.02199 0.98932 0.95209 1.20195 0.90699 0.90629 0.91216 0.93444 1.42403 1.16450 1.64458 1.12711 1.19267 0.91794 1.27102 0.98611 0.91203 1.24703 0.98106 1.01576 0.96406 1.69660 1.35199 1.48494 1.04735 0.86168 0.84097 0.78862 0.77373 1.20592 1.21927 1.21956 0.93024 0.93459 0.92929 0.89709 0.92367 0.88804 0.91208 0.86153 0.87951 0.89474 0.89613 0.89937 0.90106 0.88066 0.91777 0.89788 0.90590 0.92340 0.78259 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.67 37.16 0.36 -1.38 16 2 C -0.11 -1.67 5.31 -26.74 -0.14 -1.81 16 3 C -0.11 -1.60 1.93 -90.50 -0.17 -1.78 16 4 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 5 C 0.11 1.38 2.99 -3.71 -0.01 1.37 16 6 N -0.59 -8.72 2.98 -172.74 -0.51 -9.23 16 7 C 0.53 7.87 6.43 -10.98 -0.07 7.80 16 8 O -0.54 -9.76 15.86 5.56 0.09 -9.68 16 9 C -0.17 -1.80 0.46 -154.85 -0.07 -1.87 16 10 C 0.29 2.78 4.47 37.16 0.17 2.94 16 11 F -0.19 -2.13 13.19 2.25 0.03 -2.10 16 12 F -0.20 -2.36 17.19 2.25 0.04 -2.32 16 13 C -0.12 -0.99 5.49 -25.92 -0.14 -1.13 16 14 C -0.15 -0.92 7.73 -25.91 -0.20 -1.12 16 15 C -0.10 -0.89 6.84 -25.92 -0.18 -1.07 16 16 C 0.11 1.75 6.41 -3.69 -0.02 1.73 16 17 C -0.15 -2.64 5.66 -26.61 -0.15 -2.79 16 18 C 0.18 3.42 2.19 -67.89 -0.15 3.27 16 19 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 20 N -0.72 -16.93 4.33 -53.38 -0.23 -17.16 16 21 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 25 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.45 6.36 -51.93 -0.33 0.12 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.54 7.22 -51.93 -0.37 1.16 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.03 1.42 -51.93 -0.07 0.96 16 35 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 36 H 0.12 0.66 7.32 -51.93 -0.38 0.28 16 37 H 0.10 1.00 8.09 -51.92 -0.42 0.58 16 38 H 0.09 0.63 6.60 -51.93 -0.34 0.29 16 39 H 0.09 0.37 7.61 -51.93 -0.40 -0.02 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 42 H 0.10 1.04 7.92 -51.93 -0.41 0.63 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 1.37 7.05 -51.92 -0.37 1.01 16 45 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.38 9.66 7.51 -40.82 -0.31 9.35 16 48 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -31.53 370.87 -7.91 -39.44 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.58 Total: 7.80 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.03 Total: -2.71 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.02 Total: -53.01 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.07 Total: -4.42 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.53 -7.91 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037913552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.823 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds