Wall clock time and date at job start Tue Mar 31 2020 15:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47402 * 2 1 4 4 H 1.08997 * 109.50356 * 304.93787 * 3 2 1 5 5 C 1.53201 * 109.49765 * 65.00138 * 3 2 1 6 6 N 1.46920 * 108.89321 * 174.54574 * 5 3 2 7 7 C 1.34776 * 120.62904 * 126.46299 * 6 5 3 8 8 O 1.21279 * 120.00153 * 175.46399 * 7 6 5 9 9 C 1.50703 * 120.00246 * 355.46035 * 7 6 5 10 10 C 1.53005 * 112.84386 * 75.81975 * 9 7 6 11 11 F 1.39899 * 109.47312 * 305.78098 * 10 9 7 12 12 F 1.39901 * 109.46908 * 65.78527 * 10 9 7 13 13 C 1.53779 * 113.61423 * 304.52284 * 9 7 6 14 14 C 1.53788 * 87.07757 * 220.01263 * 13 9 7 15 15 C 1.53776 * 113.61633 * 207.01859 * 9 7 6 16 16 C 1.46962 * 118.71807 * 306.64253 * 6 5 3 17 17 C 1.53194 * 108.88868 * 53.35837 * 16 6 5 18 18 C 1.53039 * 109.30955 * 305.44268 * 17 16 6 19 19 H 1.09005 * 109.45128 * 301.35114 * 18 17 16 20 20 N 1.46502 * 109.46283 * 181.38830 * 18 17 16 21 21 C 1.36928 * 120.00180 * 84.92781 * 20 18 17 22 22 H 1.08001 * 120.00143 * 0.02562 * 21 20 18 23 23 C 1.38814 * 119.99943 * 180.02562 * 21 20 18 24 24 N 1.31611 * 120.00184 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99864 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47147 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47012 * 119.99838 * 25 23 21 28 28 H 1.48495 * 109.47296 * 239.99719 * 25 23 21 29 29 H 1.08994 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46902 * 300.00090 * 1 2 3 31 31 H 1.08999 * 109.47084 * 59.99835 * 1 2 3 32 32 H 1.09000 * 109.46902 * 239.99910 * 2 1 3 33 33 H 1.09001 * 109.46931 * 120.00687 * 2 1 3 34 34 H 1.08997 * 109.58275 * 294.41013 * 5 3 2 35 35 H 1.08999 * 109.57989 * 54.68810 * 5 3 2 36 36 H 1.09006 * 109.46990 * 185.78361 * 10 9 7 37 37 H 1.09007 * 113.61215 * 334.55625 * 13 9 7 38 38 H 1.08993 * 113.62094 * 105.46378 * 13 9 7 39 39 H 1.08993 * 113.61069 * 270.88029 * 14 13 9 40 40 H 1.09000 * 113.68796 * 139.98517 * 14 13 9 41 41 H 1.09001 * 113.61077 * 254.52730 * 15 9 7 42 42 H 1.08995 * 113.61815 * 25.43447 * 15 9 7 43 43 H 1.08993 * 109.46704 * 293.57184 * 16 6 5 44 44 H 1.09007 * 109.71416 * 173.28462 * 16 6 5 45 45 H 1.08993 * 109.49819 * 185.49546 * 17 16 6 46 46 H 1.08997 * 109.49553 * 65.39227 * 17 16 6 47 47 H 0.97005 * 119.99257 * 264.93612 * 20 18 17 48 48 H 0.97005 * 120.00377 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6351 2.1279 1.3089 6 7 2.2411 3.4656 1.3526 7 6 1.4808 4.5572 1.5691 8 8 2.0021 5.6460 1.6850 9 6 -0.0172 4.4247 1.6673 10 6 -0.4753 3.8378 3.0040 11 9 0.1798 2.6222 3.2286 12 9 -0.1672 4.7312 4.0356 13 6 -0.6572 3.7481 0.4437 14 6 -1.7929 4.7778 0.5670 15 6 -0.7762 5.6991 1.2615 16 6 3.6916 3.5906 1.1516 17 6 4.0734 2.8888 -0.1555 18 6 3.5656 1.4456 -0.1221 19 1 3.9994 0.9278 0.7335 20 7 3.9578 0.7613 -1.3567 21 6 5.1963 0.1861 -1.4569 22 1 5.8840 0.2364 -0.6256 23 6 5.5681 -0.4618 -2.6269 24 7 4.7300 -0.5235 -3.6398 25 14 7.2575 -1.2471 -2.7633 26 1 8.0034 -1.0401 -1.4961 27 1 7.1077 -2.7025 -3.0180 28 1 8.0046 -0.6228 -3.8846 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5497 2.2168 1.3542 35 1 1.9891 1.5385 2.1547 36 1 -1.5521 3.6708 2.9775 37 1 -0.0708 3.8522 -0.4693 38 1 -0.9759 2.7224 0.6287 39 1 -2.6057 4.4553 1.2177 40 1 -2.1441 5.1594 -0.3918 41 1 -1.1909 6.2481 2.1069 42 1 -0.2224 6.3364 0.5722 43 1 4.2154 3.1220 1.9845 44 1 3.9654 4.6442 1.0941 45 1 5.1578 2.8904 -0.2659 46 1 3.6208 3.4144 -0.9963 47 1 3.3400 0.7159 -2.1032 48 1 4.9896 -0.9766 -4.4573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037913552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:57 Heat of formation + Delta-G solvation = -123.907162 kcal Electronic energy + Delta-G solvation = -31268.385717 eV Core-core repulsion = 26994.044492 eV Total energy + Delta-G solvation = -4274.341225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.09913 -48.09152 -41.89606 -39.76354 -38.63289 -36.21016 -35.11377 -33.66419 -31.50287 -29.90193 -29.41649 -26.93359 -26.73777 -25.86891 -25.00237 -24.14679 -22.22358 -21.36503 -21.01096 -19.83110 -19.17073 -18.94641 -18.29098 -18.15488 -17.24819 -16.99392 -16.71142 -16.13937 -15.68679 -15.63398 -15.57701 -15.31396 -15.00927 -14.75096 -14.56955 -14.55706 -14.29319 -13.88733 -13.74662 -13.58586 -13.41510 -13.25872 -13.18657 -12.93177 -12.83652 -12.74490 -12.68517 -12.45832 -12.25596 -12.14992 -12.06063 -11.83262 -11.55157 -11.46182 -11.41909 -11.38731 -11.08460 -10.87121 -10.66254 -9.72610 -8.97188 -7.92780 -5.19618 1.37650 1.46460 1.47629 1.56491 1.86701 2.56322 2.64433 2.96275 3.13485 3.22681 3.40352 3.50966 3.73403 3.76960 3.79078 3.92155 4.03227 4.05733 4.10517 4.20560 4.26591 4.38201 4.44601 4.50422 4.64475 4.67875 4.70385 4.73432 4.78525 4.84428 4.90428 4.95061 4.97829 5.01517 5.10553 5.13940 5.15643 5.33373 5.38318 5.40823 5.49193 5.50980 5.57825 5.67709 6.29169 6.33168 7.00028 7.36523 8.11831 8.36074 9.30596 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.003564 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.571627 B = 7853.905199 C = 8260.715151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.095 4.095 4 H 0.065 0.935 5 C 0.114 3.886 6 N -0.598 5.598 7 C 0.521 3.479 8 O -0.579 6.579 9 C -0.177 4.177 10 C 0.285 3.715 11 F -0.202 7.202 12 F -0.213 7.213 13 C -0.120 4.120 14 C -0.124 4.124 15 C -0.106 4.106 16 C 0.118 3.882 17 C -0.136 4.136 18 C 0.179 3.821 19 H 0.041 0.959 20 N -0.727 5.727 21 C -0.233 4.233 22 H 0.072 0.928 23 C -0.071 4.071 24 N -0.967 5.967 25 Si 0.964 3.036 26 H -0.269 1.269 27 H -0.294 1.294 28 H -0.297 1.297 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.177 0.823 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.044 0.956 47 H 0.373 0.627 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.160 7.677 13.031 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.115 4.115 4 H 0.083 0.917 5 C -0.008 4.008 6 N -0.329 5.329 7 C 0.309 3.691 8 O -0.459 6.459 9 C -0.181 4.181 10 C 0.232 3.768 11 F -0.184 7.184 12 F -0.194 7.194 13 C -0.157 4.157 14 C -0.161 4.161 15 C -0.143 4.143 16 C -0.005 4.005 17 C -0.177 4.177 18 C 0.070 3.930 19 H 0.059 0.941 20 N -0.366 5.366 21 C -0.365 4.365 22 H 0.090 0.910 23 C -0.263 4.263 24 N -0.618 5.618 25 Si 0.794 3.206 26 H -0.194 1.194 27 H -0.221 1.221 28 H -0.225 1.225 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.091 0.909 36 H 0.194 0.806 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.206 0.794 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -18.657 8.156 13.194 24.263 hybrid contribution 1.899 -0.436 -0.773 2.096 sum -16.759 7.721 12.421 22.243 Atomic orbital electron populations 1.21821 0.93752 1.02344 1.02414 1.21363 0.97073 0.94628 1.01655 1.21700 0.94870 0.97058 0.97827 0.91676 1.22446 1.00673 0.80972 0.96670 1.48185 1.07947 1.07537 1.69218 1.20691 0.89490 0.83323 0.75560 1.90651 1.75174 1.27966 1.52154 1.23518 0.91414 1.04910 0.98265 1.22060 0.99374 0.73457 0.81927 1.92989 1.84564 1.45813 1.94985 1.92992 1.95277 1.69365 1.61794 1.23140 0.97439 1.00946 0.94173 1.22990 0.95955 0.94332 1.02781 1.22782 0.96327 0.93780 1.01449 1.21538 0.80235 1.01227 0.97484 1.22445 1.00901 0.98370 0.96007 1.20403 0.93529 0.90206 0.88884 0.94113 1.42526 1.15416 1.64752 1.13931 1.19587 0.92725 1.25856 0.98303 0.91048 1.25404 1.01374 1.03076 0.96461 1.69799 1.36860 1.50009 1.05120 0.85208 0.80430 0.77583 0.77377 1.19353 1.22111 1.22477 0.92325 0.90767 0.92401 0.93686 0.92391 0.85875 0.90942 0.80626 0.89815 0.87389 0.86169 0.89134 0.89208 0.90377 0.90824 0.90633 0.92316 0.93720 0.79450 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.67 71.98 0.70 -2.20 16 2 C -0.11 -3.12 5.31 30.59 0.16 -2.95 16 3 C -0.09 -2.80 1.93 -10.71 -0.02 -2.82 16 4 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 5 C 0.11 2.79 2.99 86.37 0.26 3.05 16 6 N -0.60 -17.17 2.98 -818.81 -2.44 -19.61 16 7 C 0.52 15.12 6.43 87.66 0.56 15.68 16 8 O -0.58 -21.39 15.86 -3.03 -0.05 -21.43 16 9 C -0.18 -3.28 0.46 -52.40 -0.02 -3.30 16 10 C 0.29 4.34 4.47 71.98 0.32 4.67 16 11 F -0.20 -3.73 13.19 44.97 0.59 -3.14 16 12 F -0.21 -4.62 17.19 44.97 0.77 -3.84 16 13 C -0.12 -1.59 5.49 31.12 0.17 -1.42 16 14 C -0.12 -1.02 7.73 31.12 0.24 -0.78 16 15 C -0.11 -1.64 6.84 31.12 0.21 -1.43 16 16 C 0.12 3.78 6.41 86.36 0.55 4.33 16 17 C -0.14 -4.98 5.66 30.67 0.17 -4.81 16 18 C 0.18 6.79 2.19 45.02 0.10 6.89 16 19 H 0.04 1.61 8.08 -2.38 -0.02 1.59 16 20 N -0.73 -35.20 4.33 -322.80 -1.40 -36.60 16 21 C -0.23 -12.62 9.93 84.04 0.83 -11.78 16 22 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 23 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 24 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16 25 Si 0.96 45.98 29.55 68.60 2.03 48.01 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.08 6.36 -2.39 -0.02 1.06 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 1.66 7.22 -2.39 -0.02 1.64 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.12 2.29 1.42 -2.39 0.00 2.29 16 35 H 0.07 1.80 7.86 -2.39 -0.02 1.78 16 36 H 0.18 0.81 7.32 -2.38 -0.02 0.79 16 37 H 0.08 1.47 8.09 -2.38 -0.02 1.46 16 38 H 0.11 0.99 6.60 -2.39 -0.02 0.97 16 39 H 0.12 0.24 7.61 -2.39 -0.02 0.23 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 1.22 8.07 -2.39 -0.02 1.20 16 42 H 0.08 1.58 7.92 -2.39 -0.02 1.56 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.08 2.56 7.05 -2.38 -0.02 2.54 16 45 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.37 19.50 7.51 -92.70 -0.70 18.80 16 48 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -71.87 370.87 4.77 -67.10 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.28 Total: 27.78 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 4.71 Total: -0.41 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -3.56 Total: -114.06 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 1.37 Total: -6.98 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.87 4.77 -67.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037913552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.808 kcal (2) G-P(sol) polarization free energy of solvation -71.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds