Wall clock time and date at job start Tue Mar 31 2020 15:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47004 * 2 1 4 4 H 1.09000 * 109.50126 * 54.92876 * 3 2 1 5 5 C 1.53189 * 109.49701 * 294.83515 * 3 2 1 6 6 N 1.46961 * 108.89173 * 185.49287 * 5 3 2 7 7 C 1.34765 * 120.65667 * 233.53549 * 6 5 3 8 8 O 1.21287 * 120.00048 * 355.35112 * 7 6 5 9 9 C 1.50704 * 120.00594 * 175.34470 * 7 6 5 10 10 C 1.53006 * 112.84378 * 67.95669 * 9 7 6 11 11 F 1.39900 * 109.46887 * 64.01331 * 10 9 7 12 12 F 1.39904 * 109.46699 * 184.00522 * 10 9 7 13 13 C 1.53779 * 113.61305 * 296.77050 * 9 7 6 14 14 C 1.53957 * 87.01699 * 220.04089 * 13 9 7 15 15 C 1.53775 * 113.61873 * 199.15836 * 9 7 6 16 16 C 1.46935 * 118.71257 * 53.35396 * 6 5 3 17 17 C 1.53194 * 108.89307 * 306.64531 * 16 6 5 18 18 C 1.53037 * 109.31186 * 54.56202 * 17 16 6 19 19 H 1.08998 * 109.46312 * 58.66030 * 18 17 16 20 20 N 1.46504 * 109.45772 * 178.62674 * 18 17 16 21 21 C 1.36934 * 120.00344 * 275.00424 * 20 18 17 22 22 H 1.07999 * 119.99825 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00052 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00085 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99729 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47314 * 59.99550 * 25 23 21 27 27 H 1.48505 * 109.46998 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.46873 * 299.99146 * 25 23 21 29 29 H 1.08995 * 109.46980 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47339 * 300.00641 * 1 2 3 31 31 H 1.08999 * 109.46619 * 60.00378 * 1 2 3 32 32 H 1.08991 * 109.47470 * 239.99852 * 2 1 3 33 33 H 1.09007 * 109.46919 * 119.99481 * 2 1 3 34 34 H 1.09001 * 109.58625 * 305.19965 * 5 3 2 35 35 H 1.09002 * 109.58863 * 65.48254 * 5 3 2 36 36 H 1.08992 * 109.47765 * 304.00881 * 10 9 7 37 37 H 1.08996 * 113.61713 * 334.56094 * 13 9 7 38 38 H 1.09003 * 113.61550 * 105.46275 * 13 9 7 39 39 H 1.09000 * 113.53625 * 270.80764 * 14 13 9 40 40 H 1.08999 * 113.74265 * 139.94325 * 14 13 9 41 41 H 1.08999 * 113.61535 * 254.52462 * 15 9 7 42 42 H 1.08994 * 113.61470 * 25.35124 * 15 9 7 43 43 H 1.09001 * 109.58273 * 186.78590 * 16 6 5 44 44 H 1.08996 * 109.58301 * 66.50110 * 16 6 5 45 45 H 1.08994 * 109.49562 * 174.52105 * 17 16 6 46 46 H 1.09005 * 109.49183 * 294.58010 * 17 16 6 47 47 H 0.97004 * 119.99731 * 94.99844 * 20 18 17 48 48 H 0.97002 * 120.00016 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9824 0.8409 5 6 1.6386 2.1267 -1.3105 6 7 2.2456 3.4644 -1.3542 7 6 1.4870 4.5564 -1.5738 8 8 0.3059 4.4345 -1.8214 9 6 2.1060 5.9290 -1.5117 10 6 3.0939 6.1873 -2.6512 11 9 2.4129 6.1636 -3.8731 12 9 3.6920 7.4396 -2.4749 13 6 2.6580 6.2936 -0.1235 14 6 2.0951 7.7070 -0.3596 15 6 1.0811 7.0588 -1.3170 16 6 3.6953 3.5888 -1.1499 17 6 4.0737 2.8882 0.1589 18 6 3.5652 1.4451 0.1258 19 1 4.0009 0.9260 -0.7279 20 7 3.9539 0.7623 1.3623 21 6 5.1914 0.1854 1.4660 22 1 5.8809 0.2334 0.6361 23 6 5.5594 -0.4621 2.6374 24 7 4.7190 -0.5211 3.6487 25 14 7.2480 -1.2484 2.7791 26 1 8.2943 -0.2101 2.5991 27 1 7.3936 -1.8701 4.1199 28 1 7.3984 -2.2898 1.7313 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.9966 1.5377 -2.1548 35 1 0.5532 2.2138 -1.3598 36 1 3.8621 5.4141 -2.6484 37 1 2.1716 5.7608 0.6935 38 1 3.7458 6.2602 -0.0636 39 1 2.7968 8.3777 -0.8554 40 1 1.6383 8.1509 0.5249 41 1 0.8979 7.6424 -2.2191 42 1 0.1622 6.7353 -0.8282 43 1 3.9670 4.6428 -1.0919 44 1 4.2229 3.1205 -1.9808 45 1 5.1578 2.8895 0.2720 46 1 3.6197 3.4153 0.9981 47 1 3.3345 0.7189 2.1076 48 1 4.9763 -0.9732 4.4674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037913556.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:01 Heat of formation + Delta-G solvation = -108.308521 kcal Electronic energy + Delta-G solvation = -30718.563690 eV Core-core repulsion = 26444.898874 eV Total energy + Delta-G solvation = -4273.664817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.33390 -47.26943 -40.89022 -38.63697 -37.31377 -34.88670 -33.84176 -31.80461 -29.90480 -29.54392 -28.20824 -26.06599 -25.56313 -24.12133 -23.91656 -22.73311 -20.92879 -20.57770 -19.79084 -19.21629 -17.89215 -17.52851 -17.23008 -17.14905 -16.22108 -16.02787 -15.12804 -14.96143 -14.81240 -14.36810 -14.09291 -13.98807 -13.80355 -13.60724 -13.42290 -13.35278 -13.15348 -12.97470 -12.86152 -12.70956 -12.27737 -12.24339 -12.10449 -11.85099 -11.65903 -11.42378 -11.35506 -10.98244 -10.92141 -10.76970 -10.73424 -10.50743 -10.39165 -10.28536 -10.21429 -9.83191 -9.70072 -9.66405 -8.95858 -8.60175 -7.03142 -5.83167 -3.12311 2.37173 2.85821 3.38035 3.38711 3.43740 3.44733 3.75551 3.88707 3.98045 4.32036 4.46500 4.52273 4.64857 4.77742 4.84471 5.04755 5.13528 5.18504 5.22504 5.35592 5.41926 5.44281 5.48271 5.54274 5.60473 5.61348 5.64048 5.71050 5.74957 5.82704 5.92698 6.04583 6.08134 6.08985 6.22719 6.28122 6.32495 6.39282 6.47141 6.59408 6.74566 6.89087 6.97183 7.34771 7.62511 8.05237 8.34793 9.46489 10.03046 10.37885 11.39034 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.003614 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.562060 B = 7745.528223 C = 8741.792295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.601 5.601 7 C 0.535 3.465 8 O -0.532 6.532 9 C -0.170 4.170 10 C 0.287 3.713 11 F -0.195 7.195 12 F -0.194 7.194 13 C -0.112 4.112 14 C -0.148 4.148 15 C -0.103 4.103 16 C 0.095 3.905 17 C -0.150 4.150 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.719 5.719 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 13.349 -10.752 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.333 5.333 7 C 0.322 3.678 8 O -0.408 6.408 9 C -0.174 4.174 10 C 0.234 3.766 11 F -0.177 7.177 12 F -0.175 7.175 13 C -0.150 4.150 14 C -0.185 4.185 15 C -0.140 4.140 16 C -0.028 4.028 17 C -0.191 4.191 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.359 5.359 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.218 0.782 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.374 13.199 -10.913 17.950 hybrid contribution 0.928 -0.438 0.346 1.083 sum -4.446 12.761 -10.568 17.155 Atomic orbital electron populations 1.21845 0.96789 1.01110 1.01279 1.21452 0.94390 0.95600 1.03541 1.21784 0.97691 0.96348 0.96572 0.91184 1.21803 0.99439 0.81091 0.97991 1.48156 1.08439 1.06765 1.69957 1.19724 0.86586 0.84691 0.76837 1.90687 1.15748 1.86160 1.48209 1.23247 1.00127 0.95993 0.98044 1.21595 0.90778 0.83942 0.80333 1.93018 1.81864 1.96703 1.46077 1.92957 1.84283 1.45061 1.95175 1.22983 1.01783 0.97161 0.93056 1.23137 0.98823 0.96400 1.00151 1.22752 0.97014 0.93609 1.00659 1.22135 0.79651 1.01070 0.99976 1.22685 1.02378 0.99358 0.94697 1.20177 0.90755 0.90453 0.91322 0.93375 1.42393 1.16512 1.64417 1.12625 1.19152 0.91827 1.27619 0.98606 0.91301 1.24716 0.98087 1.01404 0.96415 1.69643 1.35291 1.48244 1.04742 0.86315 0.84134 0.79207 0.76780 1.21317 1.21739 1.21288 0.93116 0.93003 0.93229 0.92415 0.89717 0.91476 0.89079 0.86288 0.88256 0.89676 0.88521 0.90506 0.90470 0.88210 0.90605 0.91109 0.90378 0.91944 0.78173 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.68 37.16 0.36 -1.69 16 2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.87 16 3 C -0.10 -1.59 1.93 -90.50 -0.17 -1.77 16 4 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 5 C 0.12 1.64 5.31 -3.69 -0.02 1.62 16 6 N -0.60 -7.84 2.98 -172.73 -0.51 -8.36 16 7 C 0.54 7.40 6.58 -10.99 -0.07 7.33 16 8 O -0.53 -9.06 15.65 5.55 0.09 -8.97 16 9 C -0.17 -1.87 0.47 -154.85 -0.07 -1.94 16 10 C 0.29 2.95 4.33 37.16 0.16 3.11 16 11 F -0.20 -2.43 17.21 2.25 0.04 -2.39 16 12 F -0.19 -1.96 14.55 2.25 0.03 -1.92 16 13 C -0.11 -1.07 5.79 -25.83 -0.15 -1.22 16 14 C -0.15 -1.29 7.56 -25.83 -0.20 -1.48 16 15 C -0.10 -1.08 6.79 -25.92 -0.18 -1.26 16 16 C 0.09 1.10 4.99 -3.70 -0.02 1.08 16 17 C -0.15 -2.24 5.66 -26.61 -0.15 -2.40 16 18 C 0.18 3.21 2.19 -67.89 -0.15 3.06 16 19 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 20 N -0.72 -16.31 4.33 -53.39 -0.23 -16.54 16 21 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 22 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -26.84 13.06 55.49 0.72 -26.11 16 25 Si 0.90 21.42 29.55 -169.99 -5.02 16.40 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.58 7.22 -51.93 -0.37 1.20 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.33 5.76 -51.93 -0.30 1.03 16 36 H 0.12 0.99 5.69 -51.93 -0.30 0.69 16 37 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 38 H 0.08 0.72 7.21 -51.93 -0.37 0.35 16 39 H 0.10 0.82 6.37 -51.93 -0.33 0.49 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.10 1.13 7.76 -51.93 -0.40 0.73 16 43 H 0.08 0.72 3.26 -51.93 -0.17 0.55 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.38 9.50 7.51 -40.82 -0.31 9.19 16 48 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -29.67 371.82 -7.84 -37.51 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.51 Total: 8.91 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.04 Total: -4.13 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.02 Total: -51.02 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.07 Total: -4.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.67 -7.84 -37.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037913556.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.799 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds