Wall clock time and date at job start Tue Mar 31 2020 15:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47004 * 2 1 4 4 H 1.09000 * 109.50126 * 54.92876 * 3 2 1 5 5 C 1.53189 * 109.49701 * 294.83515 * 3 2 1 6 6 N 1.46961 * 108.89173 * 185.49287 * 5 3 2 7 7 C 1.34765 * 120.65667 * 233.53549 * 6 5 3 8 8 O 1.21287 * 120.00048 * 355.35112 * 7 6 5 9 9 C 1.50704 * 120.00594 * 175.34470 * 7 6 5 10 10 C 1.53006 * 112.84378 * 67.95669 * 9 7 6 11 11 F 1.39900 * 109.46887 * 64.01331 * 10 9 7 12 12 F 1.39904 * 109.46699 * 184.00522 * 10 9 7 13 13 C 1.53779 * 113.61305 * 296.77050 * 9 7 6 14 14 C 1.53957 * 87.01699 * 220.04089 * 13 9 7 15 15 C 1.53775 * 113.61873 * 199.15836 * 9 7 6 16 16 C 1.46935 * 118.71257 * 53.35396 * 6 5 3 17 17 C 1.53194 * 108.89307 * 306.64531 * 16 6 5 18 18 C 1.53037 * 109.31186 * 54.56202 * 17 16 6 19 19 H 1.08998 * 109.46312 * 58.66030 * 18 17 16 20 20 N 1.46504 * 109.45772 * 178.62674 * 18 17 16 21 21 C 1.36934 * 120.00344 * 275.00424 * 20 18 17 22 22 H 1.07999 * 119.99825 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00052 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00085 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99729 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47314 * 59.99550 * 25 23 21 27 27 H 1.48505 * 109.46998 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.46873 * 299.99146 * 25 23 21 29 29 H 1.08995 * 109.46980 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47339 * 300.00641 * 1 2 3 31 31 H 1.08999 * 109.46619 * 60.00378 * 1 2 3 32 32 H 1.08991 * 109.47470 * 239.99852 * 2 1 3 33 33 H 1.09007 * 109.46919 * 119.99481 * 2 1 3 34 34 H 1.09001 * 109.58625 * 305.19965 * 5 3 2 35 35 H 1.09002 * 109.58863 * 65.48254 * 5 3 2 36 36 H 1.08992 * 109.47765 * 304.00881 * 10 9 7 37 37 H 1.08996 * 113.61713 * 334.56094 * 13 9 7 38 38 H 1.09003 * 113.61550 * 105.46275 * 13 9 7 39 39 H 1.09000 * 113.53625 * 270.80764 * 14 13 9 40 40 H 1.08999 * 113.74265 * 139.94325 * 14 13 9 41 41 H 1.08999 * 113.61535 * 254.52462 * 15 9 7 42 42 H 1.08994 * 113.61470 * 25.35124 * 15 9 7 43 43 H 1.09001 * 109.58273 * 186.78590 * 16 6 5 44 44 H 1.08996 * 109.58301 * 66.50110 * 16 6 5 45 45 H 1.08994 * 109.49562 * 174.52105 * 17 16 6 46 46 H 1.09005 * 109.49183 * 294.58010 * 17 16 6 47 47 H 0.97004 * 119.99731 * 94.99844 * 20 18 17 48 48 H 0.97002 * 120.00016 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9824 0.8409 5 6 1.6386 2.1267 -1.3105 6 7 2.2456 3.4644 -1.3542 7 6 1.4870 4.5564 -1.5738 8 8 0.3059 4.4345 -1.8214 9 6 2.1060 5.9290 -1.5117 10 6 3.0939 6.1873 -2.6512 11 9 2.4129 6.1636 -3.8731 12 9 3.6920 7.4396 -2.4749 13 6 2.6580 6.2936 -0.1235 14 6 2.0951 7.7070 -0.3596 15 6 1.0811 7.0588 -1.3170 16 6 3.6953 3.5888 -1.1499 17 6 4.0737 2.8882 0.1589 18 6 3.5652 1.4451 0.1258 19 1 4.0009 0.9260 -0.7279 20 7 3.9539 0.7623 1.3623 21 6 5.1914 0.1854 1.4660 22 1 5.8809 0.2334 0.6361 23 6 5.5594 -0.4621 2.6374 24 7 4.7190 -0.5211 3.6487 25 14 7.2480 -1.2484 2.7791 26 1 8.2943 -0.2101 2.5991 27 1 7.3936 -1.8701 4.1199 28 1 7.3984 -2.2898 1.7313 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.9966 1.5377 -2.1548 35 1 0.5532 2.2138 -1.3598 36 1 3.8621 5.4141 -2.6484 37 1 2.1716 5.7608 0.6935 38 1 3.7458 6.2602 -0.0636 39 1 2.7968 8.3777 -0.8554 40 1 1.6383 8.1509 0.5249 41 1 0.8979 7.6424 -2.2191 42 1 0.1622 6.7353 -0.8282 43 1 3.9670 4.6428 -1.0919 44 1 4.2229 3.1205 -1.9808 45 1 5.1578 2.8895 0.2720 46 1 3.6197 3.4153 0.9981 47 1 3.3345 0.7189 2.1076 48 1 4.9763 -0.9732 4.4674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037913556.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:00 Heat of formation + Delta-G solvation = -124.517391 kcal Electronic energy + Delta-G solvation = -30719.266560 eV Core-core repulsion = 26444.898874 eV Total energy + Delta-G solvation = -4274.367686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.15832 -48.10791 -41.92461 -39.76138 -38.41559 -36.26798 -35.32514 -33.45195 -31.09925 -30.88927 -29.31273 -26.90836 -26.86305 -25.43665 -25.06400 -24.07769 -22.22922 -21.59799 -20.94086 -20.23208 -19.06421 -18.82115 -18.37740 -18.09266 -17.33588 -16.93832 -16.74215 -16.11777 -15.78618 -15.59047 -15.56166 -15.24347 -14.85123 -14.72448 -14.59378 -14.53323 -14.37439 -14.01234 -13.95231 -13.63526 -13.57185 -13.19887 -13.16423 -12.98012 -12.84917 -12.78812 -12.62313 -12.53518 -12.28667 -12.18066 -12.04325 -11.82899 -11.60079 -11.54129 -11.48399 -11.25531 -11.08661 -10.90067 -10.72003 -9.74898 -8.93234 -7.88287 -5.15371 1.32357 1.51136 1.52350 1.58175 1.80888 2.54253 2.60428 2.96939 3.02360 3.12422 3.44812 3.45613 3.70505 3.77139 3.79320 3.84785 3.92566 4.02873 4.04973 4.16916 4.30218 4.32900 4.42780 4.45512 4.63447 4.65152 4.66432 4.71806 4.80144 4.80242 4.84525 4.89510 4.96320 5.01038 5.03650 5.05437 5.16841 5.27916 5.33685 5.37237 5.46325 5.53593 5.59683 5.65674 6.27393 6.33076 6.97076 7.40115 8.16405 8.39113 9.34965 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.003614 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.562060 B = 7745.528223 C = 8741.792295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.091 4.091 4 H 0.054 0.946 5 C 0.125 3.875 6 N -0.600 5.600 7 C 0.534 3.466 8 O -0.568 6.568 9 C -0.172 4.172 10 C 0.288 3.712 11 F -0.209 7.209 12 F -0.190 7.190 13 C -0.110 4.110 14 C -0.135 4.135 15 C -0.109 4.109 16 C 0.100 3.900 17 C -0.140 4.140 18 C 0.178 3.822 19 H 0.048 0.952 20 N -0.730 5.730 21 C -0.229 4.229 22 H 0.078 0.922 23 C -0.074 4.074 24 N -0.970 5.970 25 Si 0.964 3.036 26 H -0.278 1.278 27 H -0.303 1.303 28 H -0.281 1.281 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.370 0.630 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 14.630 -12.461 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.111 4.111 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.331 5.331 7 C 0.321 3.679 8 O -0.447 6.447 9 C -0.176 4.176 10 C 0.234 3.766 11 F -0.190 7.190 12 F -0.171 7.171 13 C -0.147 4.147 14 C -0.172 4.172 15 C -0.147 4.147 16 C -0.022 4.022 17 C -0.181 4.181 18 C 0.069 3.931 19 H 0.066 0.934 20 N -0.369 5.369 21 C -0.361 4.361 22 H 0.096 0.904 23 C -0.266 4.266 24 N -0.621 5.621 25 Si 0.794 3.206 26 H -0.204 1.204 27 H -0.229 1.229 28 H -0.207 1.207 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.162 0.838 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.071 0.929 47 H 0.202 0.798 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.191 14.511 -12.678 19.719 hybrid contribution 0.497 -0.812 0.819 1.256 sum -3.693 13.699 -11.858 18.491 Atomic orbital electron populations 1.21779 0.95054 1.01866 1.01637 1.21358 0.95914 0.95313 1.01978 1.21618 0.96060 0.96338 0.97120 0.92787 1.21681 0.99275 0.81647 0.97169 1.48208 1.09031 1.06376 1.69495 1.20182 0.86165 0.85635 0.75868 1.90671 1.17399 1.86767 1.49874 1.23316 1.00695 0.94164 0.99388 1.21775 0.90886 0.84681 0.79242 1.92997 1.82297 1.96790 1.46946 1.92966 1.84062 1.45021 1.95080 1.23003 1.02712 0.97407 0.91627 1.23090 0.98073 0.96014 1.00018 1.22768 0.96979 0.93830 1.01081 1.22209 0.78772 1.02576 0.98645 1.22452 1.01685 0.97472 0.96460 1.20422 0.92153 0.91484 0.88994 0.93378 1.42564 1.15464 1.64983 1.13864 1.19544 0.92613 1.25695 0.98241 0.90390 1.25424 1.01300 1.03212 0.96631 1.69805 1.37053 1.50146 1.05140 0.85347 0.80716 0.78483 0.76028 1.20372 1.22946 1.20704 0.92206 0.93587 0.91868 0.91733 0.93377 0.89938 0.89661 0.83782 0.89223 0.87958 0.87693 0.89431 0.90646 0.89532 0.87915 0.88846 0.90967 0.92947 0.79780 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.68 71.98 0.70 -3.14 16 2 C -0.11 -3.32 5.31 30.60 0.16 -3.16 16 3 C -0.09 -2.77 1.93 -10.72 -0.02 -2.79 16 4 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 5 C 0.12 3.24 5.31 86.35 0.46 3.70 16 6 N -0.60 -14.40 2.98 -818.80 -2.44 -16.84 16 7 C 0.53 13.91 6.58 87.66 0.58 14.48 16 8 O -0.57 -18.99 15.65 -3.05 -0.05 -19.04 16 9 C -0.17 -3.41 0.47 -52.40 -0.02 -3.43 16 10 C 0.29 5.03 4.33 71.98 0.31 5.34 16 11 F -0.21 -4.74 17.21 44.97 0.77 -3.97 16 12 F -0.19 -3.22 14.55 44.97 0.65 -2.56 16 13 C -0.11 -1.82 5.79 31.18 0.18 -1.64 16 14 C -0.13 -2.02 7.56 31.18 0.24 -1.79 16 15 C -0.11 -2.14 6.79 31.12 0.21 -1.93 16 16 C 0.10 2.00 4.99 86.36 0.43 2.43 16 17 C -0.14 -3.94 5.66 30.67 0.17 -3.76 16 18 C 0.18 6.08 2.19 45.02 0.10 6.18 16 19 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 20 N -0.73 -33.40 4.33 -322.82 -1.40 -34.79 16 21 C -0.23 -11.70 9.93 84.03 0.83 -10.86 16 22 H 0.08 3.78 7.83 -2.91 -0.02 3.75 16 23 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 24 N -0.97 -57.36 13.06 21.65 0.28 -57.08 16 25 Si 0.96 44.22 29.55 68.60 2.03 46.25 16 26 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 27 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 28 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.49 6.70 -2.39 -0.02 1.47 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.85 7.22 -2.38 -0.02 1.83 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 2.38 5.76 -2.39 -0.01 2.37 16 36 H 0.15 1.79 5.69 -2.39 -0.01 1.77 16 37 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 38 H 0.10 1.35 7.21 -2.39 -0.02 1.33 16 39 H 0.10 1.45 6.37 -2.39 -0.02 1.43 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 42 H 0.09 1.93 7.76 -2.39 -0.02 1.92 16 43 H 0.10 1.54 3.26 -2.39 -0.01 1.53 16 44 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 47 H 0.37 18.90 7.51 -92.71 -0.70 18.20 16 48 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -65.04 371.82 4.92 -60.12 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.28 Total: 31.82 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 4.79 Total: -3.90 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -3.55 Total: -108.71 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 1.43 Total: -6.53 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.04 4.92 -60.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037913556.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.400 kcal (2) G-P(sol) polarization free energy of solvation -65.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds