Wall clock time and date at job start Tue Mar 31 2020 15:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 H 1.08998 * 109.49789 * 55.00017 * 3 2 1 5 5 C 1.53199 * 109.49728 * 294.93807 * 3 2 1 6 6 N 1.46923 * 108.77455 * 185.41396 * 5 3 2 7 7 C 1.34780 * 120.63329 * 233.63396 * 6 5 3 8 8 O 1.21277 * 119.99428 * 354.28028 * 7 6 5 9 9 C 1.50693 * 120.00171 * 174.28713 * 7 6 5 10 10 C 1.52999 * 112.85238 * 291.29040 * 9 7 6 11 11 C 1.53783 * 113.61605 * 159.98164 * 9 7 6 12 12 C 1.53776 * 87.08258 * 220.01874 * 11 9 7 13 13 F 1.39897 * 113.61476 * 270.87944 * 12 11 9 14 14 F 1.39901 * 113.68808 * 139.99430 * 12 11 9 15 15 C 1.53772 * 87.08191 * 25.43338 * 12 11 9 16 16 C 1.46929 * 118.73972 * 53.61007 * 6 5 3 17 17 C 1.53193 * 108.77543 * 306.38983 * 16 6 5 18 18 C 1.53036 * 109.33817 * 54.61806 * 17 16 6 19 19 H 1.08999 * 109.48862 * 178.64657 * 18 17 16 20 20 N 1.46501 * 109.43359 * 58.68976 * 18 17 16 21 21 C 1.36935 * 120.00210 * 84.94338 * 20 18 17 22 22 H 1.08005 * 119.99877 * 0.02562 * 21 20 18 23 23 C 1.38815 * 120.00201 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99449 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00043 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47421 * 89.99951 * 25 23 21 27 27 H 1.48502 * 109.47442 * 209.99788 * 25 23 21 28 28 H 1.48496 * 109.47528 * 330.00071 * 25 23 21 29 29 H 1.09000 * 109.47306 * 299.99582 * 1 2 3 30 30 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47431 * 59.99776 * 1 2 3 32 32 H 1.08992 * 109.47191 * 120.00208 * 2 1 3 33 33 H 1.09000 * 109.46569 * 240.00320 * 2 1 3 34 34 H 1.08995 * 109.58668 * 305.20064 * 5 3 2 35 35 H 1.08997 * 109.58702 * 65.48571 * 5 3 2 36 36 H 1.09002 * 109.47087 * 65.57123 * 10 9 7 37 37 H 1.08994 * 109.47579 * 185.57435 * 10 9 7 38 38 H 1.09004 * 109.47075 * 305.57342 * 10 9 7 39 39 H 1.09001 * 113.61545 * 334.57273 * 11 9 7 40 40 H 1.09004 * 113.61604 * 105.46650 * 11 9 7 41 41 H 1.09005 * 113.61538 * 220.01708 * 15 12 11 42 42 H 1.08999 * 113.61654 * 89.11410 * 15 12 11 43 43 H 1.08997 * 109.58957 * 66.17785 * 16 6 5 44 44 H 1.08996 * 109.58873 * 186.46462 * 16 6 5 45 45 H 1.09000 * 109.50128 * 174.58231 * 17 16 6 46 46 H 1.09002 * 109.49998 * 294.65205 * 17 16 6 47 47 H 0.97003 * 119.99536 * 264.94469 * 20 18 17 48 48 H 0.97005 * 119.99433 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6056 1.9819 0.8417 5 6 1.6363 2.1275 -1.3095 6 7 2.2427 3.4652 -1.3499 7 6 1.4829 4.5575 -1.5645 8 8 0.3058 4.4348 -1.8293 9 6 2.0961 5.9312 -1.4756 10 6 2.4986 6.3110 -0.0492 11 6 1.2814 7.0174 -2.1976 12 6 2.6238 7.5968 -2.6739 13 9 3.1763 8.5303 -1.7905 14 9 2.6031 8.0481 -3.9980 15 6 3.2018 6.1808 -2.5148 16 6 3.6932 3.5895 -1.1514 17 6 4.0738 2.8881 0.1563 18 6 3.5653 1.4451 0.1240 19 1 3.8557 0.9365 1.0433 20 7 4.1495 0.7480 -1.0245 21 6 5.3875 0.1723 -0.9188 22 1 5.9330 0.2318 0.0115 23 6 5.9413 -0.4878 -2.0072 24 7 5.2761 -0.5607 -3.1406 25 14 7.6296 -1.2737 -1.8627 26 1 7.4844 -2.6776 -1.4009 27 1 8.2993 -1.2554 -3.1880 28 1 8.4477 -0.5130 -0.8843 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.9928 1.5390 -2.1548 35 1 0.5508 2.2146 -1.3568 36 1 3.3017 5.6558 0.2884 37 1 2.8419 7.3453 -0.0317 38 1 1.6389 6.2023 0.6121 39 1 0.6604 6.6322 -3.0064 40 1 0.7366 7.6764 -1.5216 41 1 4.2075 6.1643 -2.0947 42 1 3.1060 5.5668 -3.4103 43 1 4.2176 3.1202 -1.9838 44 1 3.9654 4.6435 -1.0957 45 1 5.1581 2.8893 0.2676 46 1 3.6213 3.4146 0.9966 47 1 3.6594 0.6943 -1.8598 48 1 5.6630 -1.0222 -3.9010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037953034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:04 Heat of formation + Delta-G solvation = -106.544056 kcal Electronic energy + Delta-G solvation = -30771.737247 eV Core-core repulsion = 26498.148943 eV Total energy + Delta-G solvation = -4273.588304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.02783 -47.33603 -40.80396 -38.56204 -37.06085 -34.49582 -33.78487 -31.73990 -29.93350 -29.33294 -28.48505 -26.57782 -25.73291 -23.97690 -23.64520 -23.42595 -21.09320 -20.68817 -19.08346 -18.36016 -17.81247 -17.37823 -16.86219 -16.73736 -15.99817 -15.57445 -15.25472 -14.74249 -14.46618 -14.39933 -14.10136 -14.06596 -13.84891 -13.70813 -13.59760 -13.33183 -13.19959 -12.95820 -12.66416 -12.49556 -12.40860 -12.31006 -11.97274 -11.78048 -11.44667 -11.36750 -11.22304 -11.12310 -10.99364 -10.86342 -10.77783 -10.56758 -10.33155 -10.28113 -10.20538 -9.83373 -9.60056 -9.52932 -8.96709 -8.29255 -7.02367 -5.83558 -3.12086 2.64880 3.06955 3.28468 3.38351 3.44225 3.45805 3.54659 3.96863 3.98966 4.19887 4.53452 4.63009 4.85327 5.05743 5.10342 5.21433 5.24910 5.28715 5.33295 5.37406 5.43793 5.50057 5.54323 5.60386 5.61137 5.65453 5.75516 5.77301 5.78474 5.86943 5.93802 6.05588 6.10845 6.15441 6.30863 6.33776 6.36948 6.52412 6.57866 6.66480 6.71908 6.89232 6.95977 7.63277 7.64417 8.27222 8.34923 9.46783 10.03055 10.38051 11.38773 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.003993 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.585046 B = 7010.494873 C = 8348.248230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.594 5.594 7 C 0.533 3.467 8 O -0.548 6.548 9 C -0.099 4.099 10 C -0.139 4.139 11 C -0.136 4.136 12 C 0.255 3.745 13 F -0.177 7.177 14 F -0.189 7.189 15 C -0.154 4.154 16 C 0.105 3.895 17 C -0.150 4.150 18 C 0.178 3.822 19 H 0.051 0.949 20 N -0.718 5.718 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.903 3.097 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.049 0.951 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.990 13.351 5.382 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.324 5.324 7 C 0.319 3.681 8 O -0.426 6.426 9 C -0.102 4.102 10 C -0.196 4.196 11 C -0.174 4.174 12 C 0.219 3.781 13 F -0.158 7.158 14 F -0.169 7.169 15 C -0.192 4.192 16 C -0.017 4.017 17 C -0.192 4.192 18 C 0.068 3.932 19 H 0.069 0.931 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.209 1.209 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.414 13.229 5.263 16.052 hybrid contribution 1.092 -0.344 -0.304 1.185 sum -6.322 12.885 4.959 15.185 Atomic orbital electron populations 1.21854 0.96819 1.01072 1.01314 1.21417 0.94267 0.95725 1.03404 1.21747 0.97411 0.96145 0.96940 0.91613 1.21712 0.98703 0.81562 0.98408 1.48055 1.08710 1.06358 1.69318 1.19861 0.86224 0.85183 0.76792 1.90670 1.16203 1.86615 1.49129 1.21782 0.97024 0.93963 0.97449 1.21825 1.02723 1.03166 0.91892 1.24003 0.95064 0.96359 1.01982 1.22007 0.97476 0.85598 0.73050 1.92986 1.86903 1.68293 1.67608 1.93018 1.97092 1.91209 1.35627 1.24343 1.00562 0.93169 1.01166 1.21987 0.79063 1.00521 1.00166 1.22542 1.01854 0.99348 0.95421 1.20216 0.89702 0.90629 0.92655 0.93123 1.42473 1.19047 1.63989 1.10556 1.19206 0.93574 1.27112 0.97042 0.91279 1.24692 0.98520 1.01419 0.96008 1.69648 1.38126 1.47975 1.02267 0.86252 0.84224 0.79388 0.76656 1.21821 1.21899 1.20853 0.93407 0.93142 0.92796 0.92009 0.90472 0.90673 0.89632 0.90438 0.90364 0.91213 0.86115 0.88293 0.87579 0.86298 0.89618 0.90550 0.90711 0.93256 0.78102 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.11 -1.69 5.19 -26.73 -0.14 -1.82 16 3 C -0.10 -1.57 2.14 -90.50 -0.19 -1.76 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.12 1.88 5.01 -3.71 -0.02 1.87 16 6 N -0.59 -8.80 2.97 -172.77 -0.51 -9.31 16 7 C 0.53 7.76 6.67 -10.99 -0.07 7.69 16 8 O -0.55 -9.59 15.67 5.56 0.09 -9.50 16 9 C -0.10 -1.11 0.70 -154.85 -0.11 -1.22 16 10 C -0.14 -1.33 8.74 37.16 0.32 -1.01 16 11 C -0.14 -1.43 6.68 -25.92 -0.17 -1.61 16 12 C 0.26 2.77 3.26 -25.93 -0.08 2.68 16 13 F -0.18 -1.96 15.49 2.25 0.03 -1.93 16 14 F -0.19 -2.33 17.41 2.25 0.04 -2.29 16 15 C -0.15 -1.63 5.41 -25.92 -0.14 -1.77 16 16 C 0.10 1.51 5.02 -3.71 -0.02 1.49 16 17 C -0.15 -2.27 5.74 -26.61 -0.15 -2.42 16 18 C 0.18 3.11 2.53 -67.89 -0.17 2.94 16 19 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 20 N -0.72 -15.71 3.72 -53.38 -0.20 -15.91 16 21 C -0.24 -5.99 9.93 -15.06 -0.15 -6.14 16 22 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 24 N -0.93 -26.42 13.06 55.49 0.72 -25.70 16 25 Si 0.90 21.31 29.55 -169.99 -5.02 16.29 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.39 7.70 -51.93 -0.40 0.99 16 34 H 0.08 1.35 6.64 -51.93 -0.34 1.01 16 35 H 0.09 1.38 5.76 -51.93 -0.30 1.08 16 36 H 0.08 0.73 6.12 -51.93 -0.32 0.41 16 37 H 0.08 0.68 6.16 -51.93 -0.32 0.36 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.12 1.36 7.78 -51.93 -0.40 0.95 16 40 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.11 0.99 7.05 -51.93 -0.37 0.63 16 42 H 0.12 1.30 8.09 -51.93 -0.42 0.88 16 43 H 0.09 1.49 7.74 -51.93 -0.40 1.09 16 44 H 0.08 0.90 3.05 -51.93 -0.16 0.74 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.05 0.65 8.04 -51.93 -0.42 0.23 16 47 H 0.38 9.07 5.94 -40.82 -0.24 8.83 16 48 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -28.61 369.33 -7.48 -36.09 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.36 Total: 9.78 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.84 Total: -3.10 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.01 Total: -50.92 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.07 Total: -4.21 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.61 -7.48 -36.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037953034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.453 kcal (2) G-P(sol) polarization free energy of solvation -28.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds