Wall clock time and date at job start Tue Mar 31 2020 15:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 H 1.08998 * 109.49789 * 55.00017 * 3 2 1 5 5 C 1.53199 * 109.49728 * 294.93807 * 3 2 1 6 6 N 1.46923 * 108.77455 * 185.41396 * 5 3 2 7 7 C 1.34780 * 120.63329 * 233.63396 * 6 5 3 8 8 O 1.21277 * 119.99428 * 354.28028 * 7 6 5 9 9 C 1.50693 * 120.00171 * 174.28713 * 7 6 5 10 10 C 1.52999 * 112.85238 * 291.29040 * 9 7 6 11 11 C 1.53783 * 113.61605 * 159.98164 * 9 7 6 12 12 C 1.53776 * 87.08258 * 220.01874 * 11 9 7 13 13 F 1.39897 * 113.61476 * 270.87944 * 12 11 9 14 14 F 1.39901 * 113.68808 * 139.99430 * 12 11 9 15 15 C 1.53772 * 87.08191 * 25.43338 * 12 11 9 16 16 C 1.46929 * 118.73972 * 53.61007 * 6 5 3 17 17 C 1.53193 * 108.77543 * 306.38983 * 16 6 5 18 18 C 1.53036 * 109.33817 * 54.61806 * 17 16 6 19 19 H 1.08999 * 109.48862 * 178.64657 * 18 17 16 20 20 N 1.46501 * 109.43359 * 58.68976 * 18 17 16 21 21 C 1.36935 * 120.00210 * 84.94338 * 20 18 17 22 22 H 1.08005 * 119.99877 * 0.02562 * 21 20 18 23 23 C 1.38815 * 120.00201 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99449 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00043 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47421 * 89.99951 * 25 23 21 27 27 H 1.48502 * 109.47442 * 209.99788 * 25 23 21 28 28 H 1.48496 * 109.47528 * 330.00071 * 25 23 21 29 29 H 1.09000 * 109.47306 * 299.99582 * 1 2 3 30 30 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47431 * 59.99776 * 1 2 3 32 32 H 1.08992 * 109.47191 * 120.00208 * 2 1 3 33 33 H 1.09000 * 109.46569 * 240.00320 * 2 1 3 34 34 H 1.08995 * 109.58668 * 305.20064 * 5 3 2 35 35 H 1.08997 * 109.58702 * 65.48571 * 5 3 2 36 36 H 1.09002 * 109.47087 * 65.57123 * 10 9 7 37 37 H 1.08994 * 109.47579 * 185.57435 * 10 9 7 38 38 H 1.09004 * 109.47075 * 305.57342 * 10 9 7 39 39 H 1.09001 * 113.61545 * 334.57273 * 11 9 7 40 40 H 1.09004 * 113.61604 * 105.46650 * 11 9 7 41 41 H 1.09005 * 113.61538 * 220.01708 * 15 12 11 42 42 H 1.08999 * 113.61654 * 89.11410 * 15 12 11 43 43 H 1.08997 * 109.58957 * 66.17785 * 16 6 5 44 44 H 1.08996 * 109.58873 * 186.46462 * 16 6 5 45 45 H 1.09000 * 109.50128 * 174.58231 * 17 16 6 46 46 H 1.09002 * 109.49998 * 294.65205 * 17 16 6 47 47 H 0.97003 * 119.99536 * 264.94469 * 20 18 17 48 48 H 0.97005 * 119.99433 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6056 1.9819 0.8417 5 6 1.6363 2.1275 -1.3095 6 7 2.2427 3.4652 -1.3499 7 6 1.4829 4.5575 -1.5645 8 8 0.3058 4.4348 -1.8293 9 6 2.0961 5.9312 -1.4756 10 6 2.4986 6.3110 -0.0492 11 6 1.2814 7.0174 -2.1976 12 6 2.6238 7.5968 -2.6739 13 9 3.1763 8.5303 -1.7905 14 9 2.6031 8.0481 -3.9980 15 6 3.2018 6.1808 -2.5148 16 6 3.6932 3.5895 -1.1514 17 6 4.0738 2.8881 0.1563 18 6 3.5653 1.4451 0.1240 19 1 3.8557 0.9365 1.0433 20 7 4.1495 0.7480 -1.0245 21 6 5.3875 0.1723 -0.9188 22 1 5.9330 0.2318 0.0115 23 6 5.9413 -0.4878 -2.0072 24 7 5.2761 -0.5607 -3.1406 25 14 7.6296 -1.2737 -1.8627 26 1 7.4844 -2.6776 -1.4009 27 1 8.2993 -1.2554 -3.1880 28 1 8.4477 -0.5130 -0.8843 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.9928 1.5390 -2.1548 35 1 0.5508 2.2146 -1.3568 36 1 3.3017 5.6558 0.2884 37 1 2.8419 7.3453 -0.0317 38 1 1.6389 6.2023 0.6121 39 1 0.6604 6.6322 -3.0064 40 1 0.7366 7.6764 -1.5216 41 1 4.2075 6.1643 -2.0947 42 1 3.1060 5.5668 -3.4103 43 1 4.2176 3.1202 -1.9838 44 1 3.9654 4.6435 -1.0957 45 1 5.1581 2.8893 0.2676 46 1 3.6213 3.4146 0.9966 47 1 3.6594 0.6943 -1.8598 48 1 5.6630 -1.0222 -3.9010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037953034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:03 Heat of formation + Delta-G solvation = -121.439538 kcal Electronic energy + Delta-G solvation = -30772.383164 eV Core-core repulsion = 26498.148943 eV Total energy + Delta-G solvation = -4274.234220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.91528 -48.23627 -41.93392 -39.78107 -38.20499 -35.89169 -35.30952 -33.38374 -31.08559 -30.67391 -29.70167 -27.44953 -26.98749 -25.54255 -25.00522 -24.59461 -22.28095 -21.82705 -20.26043 -19.51018 -19.23900 -18.84893 -17.84271 -17.72728 -17.04013 -16.71651 -16.61788 -16.23556 -15.84800 -15.63580 -15.25318 -15.14424 -15.05658 -14.79765 -14.67815 -14.57598 -14.42447 -14.16108 -14.01781 -13.63734 -13.37837 -13.24373 -13.06867 -12.96778 -12.85586 -12.79837 -12.62858 -12.37921 -12.24206 -12.10430 -12.09211 -12.00408 -11.81196 -11.56401 -11.44036 -11.40341 -11.09887 -10.86108 -10.65520 -9.59361 -8.89199 -7.86836 -5.12299 1.50120 1.50409 1.51714 1.58719 1.92472 2.38685 2.61460 2.67524 3.08384 3.11123 3.26378 3.47700 3.61142 3.85368 3.88566 4.01423 4.04258 4.11350 4.25237 4.28515 4.38724 4.39100 4.45934 4.48668 4.54010 4.61189 4.63244 4.71820 4.78695 4.85740 4.87703 4.92574 4.94397 5.02904 5.07010 5.19316 5.19842 5.25462 5.29024 5.37239 5.42740 5.53708 5.63216 5.68984 6.35202 6.44358 7.08401 7.43100 8.20094 8.42909 9.36523 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.003993 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.585046 B = 7010.494873 C = 8348.248230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.090 4.090 4 H 0.087 0.913 5 C 0.124 3.876 6 N -0.594 5.594 7 C 0.532 3.468 8 O -0.578 6.578 9 C -0.095 4.095 10 C -0.136 4.136 11 C -0.134 4.134 12 C 0.259 3.741 13 F -0.175 7.175 14 F -0.198 7.198 15 C -0.155 4.155 16 C 0.113 3.887 17 C -0.143 4.143 18 C 0.171 3.829 19 H 0.047 0.953 20 N -0.724 5.724 21 C -0.223 4.223 22 H 0.076 0.924 23 C -0.072 4.072 24 N -0.969 5.969 25 Si 0.960 3.040 26 H -0.295 1.295 27 H -0.303 1.303 28 H -0.269 1.269 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.052 0.948 44 H 0.108 0.892 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.373 0.627 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.951 15.145 7.583 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.110 4.110 4 H 0.106 0.894 5 C 0.001 3.999 6 N -0.324 5.324 7 C 0.321 3.679 8 O -0.459 6.459 9 C -0.098 4.098 10 C -0.192 4.192 11 C -0.172 4.172 12 C 0.223 3.777 13 F -0.156 7.156 14 F -0.179 7.179 15 C -0.193 4.193 16 C -0.009 4.009 17 C -0.184 4.184 18 C 0.062 3.938 19 H 0.065 0.935 20 N -0.365 5.365 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.264 4.264 24 N -0.621 5.621 25 Si 0.791 3.209 26 H -0.223 1.223 27 H -0.231 1.231 28 H -0.194 1.194 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.129 0.871 43 H 0.070 0.930 44 H 0.126 0.874 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.206 0.794 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.368 15.055 7.522 18.372 hybrid contribution 1.007 -0.876 -0.945 1.635 sum -6.361 14.179 6.577 16.875 Atomic orbital electron populations 1.21783 0.94809 1.01864 1.01869 1.21344 0.96020 0.95395 1.01684 1.21651 0.95886 0.96289 0.97194 0.89432 1.21523 0.98550 0.82110 0.97697 1.48077 1.08893 1.06083 1.69344 1.20422 0.85811 0.86120 0.75565 1.90657 1.17684 1.87186 1.50331 1.21817 0.97248 0.91799 0.98967 1.21854 1.03065 1.04032 0.90296 1.23999 0.94991 0.96256 1.01933 1.21950 0.97641 0.85505 0.72611 1.92991 1.86890 1.68262 1.67430 1.93002 1.97142 1.91315 1.36460 1.24369 1.01241 0.92899 1.00819 1.21910 0.78408 1.02013 0.98585 1.22419 1.01548 0.97602 0.96790 1.20467 0.90986 0.91664 0.90660 0.93489 1.42591 1.18189 1.64297 1.11447 1.19561 0.94269 1.25019 0.96639 0.90640 1.25332 1.01619 1.03298 0.96136 1.69801 1.39555 1.49877 1.02868 0.85330 0.81082 0.78378 0.76112 1.22268 1.23069 1.19392 0.91701 0.92338 0.93269 0.91943 0.93890 0.93596 0.89706 0.89916 0.89034 0.90790 0.87101 0.86563 0.85969 0.87102 0.92980 0.87391 0.91368 0.90110 0.79370 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.67 71.98 0.70 -2.95 16 2 C -0.11 -3.22 5.19 30.59 0.16 -3.07 16 3 C -0.09 -2.67 2.14 -10.71 -0.02 -2.70 16 4 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 5 C 0.12 3.95 5.01 86.37 0.43 4.38 16 6 N -0.59 -17.00 2.97 -818.92 -2.43 -19.44 16 7 C 0.53 14.76 6.67 87.65 0.58 15.35 16 8 O -0.58 -19.77 15.67 -3.02 -0.05 -19.81 16 9 C -0.10 -1.91 0.70 -52.40 -0.04 -1.95 16 10 C -0.14 -2.10 8.74 71.98 0.63 -1.47 16 11 C -0.13 -2.56 6.68 31.12 0.21 -2.35 16 12 C 0.26 5.08 3.26 31.12 0.10 5.18 16 13 F -0.17 -3.38 15.49 44.97 0.70 -2.68 16 14 F -0.20 -4.63 17.41 44.97 0.78 -3.85 16 15 C -0.16 -2.97 5.41 31.12 0.17 -2.80 16 16 C 0.11 3.08 5.02 86.36 0.43 3.51 16 17 C -0.14 -3.98 5.74 30.67 0.18 -3.81 16 18 C 0.17 5.78 2.53 45.02 0.11 5.89 16 19 H 0.05 1.64 8.08 -2.39 -0.02 1.62 16 20 N -0.72 -32.05 3.72 -322.81 -1.20 -33.25 16 21 C -0.22 -11.22 9.93 84.03 0.83 -10.38 16 22 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 23 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 24 N -0.97 -56.77 13.06 21.65 0.28 -56.49 16 25 Si 0.96 44.32 29.55 68.60 2.03 46.35 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.27 6.70 -2.39 -0.02 1.25 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.04 1.60 7.70 -2.39 -0.02 1.58 16 34 H 0.05 1.74 6.64 -2.39 -0.02 1.72 16 35 H 0.08 2.73 5.76 -2.39 -0.01 2.72 16 36 H 0.08 1.20 6.12 -2.39 -0.01 1.19 16 37 H 0.09 1.22 6.16 -2.39 -0.01 1.21 16 38 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.11 2.39 7.78 -2.39 -0.02 2.37 16 40 H 0.12 1.82 8.10 -2.39 -0.02 1.80 16 41 H 0.12 1.93 7.05 -2.38 -0.02 1.91 16 42 H 0.11 2.34 8.09 -2.39 -0.02 2.32 16 43 H 0.05 1.81 7.74 -2.39 -0.02 1.80 16 44 H 0.11 2.25 3.05 -2.39 -0.01 2.24 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.08 1.79 8.04 -2.39 -0.02 1.78 16 47 H 0.37 18.29 5.94 -92.71 -0.55 17.74 16 48 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -62.50 369.33 5.48 -57.02 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.43 Total: 32.68 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 4.94 Total: -0.54 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -3.35 Total: -109.17 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 1.48 Total: -6.53 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -62.50 5.48 -57.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037953034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.418 kcal (2) G-P(sol) polarization free energy of solvation -62.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds