Wall clock time and date at job start Tue Mar 31 2020 15:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 H 1.08998 * 109.49970 * 304.93703 * 3 2 1 5 5 C 1.53196 * 109.49950 * 64.99750 * 3 2 1 6 6 N 1.46921 * 108.77789 * 174.61840 * 5 3 2 7 7 C 1.34773 * 120.63099 * 126.37032 * 6 5 3 8 8 O 1.21280 * 119.99923 * 4.69125 * 7 6 5 9 9 C 1.50706 * 120.00195 * 184.68774 * 7 6 5 10 10 C 1.52993 * 112.84842 * 292.78159 * 9 7 6 11 11 C 1.53781 * 113.61148 * 63.97367 * 9 7 6 12 12 C 1.53956 * 87.01968 * 89.22759 * 11 9 7 13 13 F 1.39891 * 113.54082 * 270.81188 * 12 11 9 14 14 F 1.39901 * 113.66398 * 139.92846 * 12 11 9 15 15 C 1.53781 * 113.61282 * 161.58181 * 9 7 6 16 16 C 1.46927 * 118.73693 * 306.64402 * 6 5 3 17 17 C 1.52758 * 109.00999 * 53.31155 * 16 6 5 18 18 C 1.53036 * 109.52580 * 184.85254 * 3 2 1 19 19 H 1.08999 * 109.46300 * 58.65806 * 18 3 2 20 20 N 1.46501 * 109.46115 * 298.69034 * 18 3 2 21 21 C 1.36934 * 120.00301 * 155.00204 * 20 18 3 22 22 H 1.08003 * 119.99797 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00370 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99700 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00323 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46619 * 59.99726 * 25 23 21 27 27 H 1.48494 * 109.47021 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47291 * 300.00252 * 25 23 21 29 29 H 1.08999 * 109.46794 * 60.00231 * 1 2 3 30 30 H 1.08999 * 109.46696 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46896 * 299.99918 * 1 2 3 32 32 H 1.08999 * 109.47378 * 240.00298 * 2 1 3 33 33 H 1.08999 * 109.46794 * 119.99769 * 2 1 3 34 34 H 1.09004 * 109.58245 * 54.83267 * 5 3 2 35 35 H 1.08996 * 109.70545 * 294.48086 * 5 3 2 36 36 H 1.08997 * 109.47694 * 60.34546 * 10 9 7 37 37 H 1.09007 * 109.47196 * 300.34314 * 10 9 7 38 38 H 1.09007 * 109.47250 * 180.34764 * 10 9 7 39 39 H 1.09002 * 113.61452 * 203.74684 * 11 9 7 40 40 H 1.09003 * 113.61520 * 334.65229 * 11 9 7 41 41 H 1.08993 * 113.61755 * 25.35009 * 15 9 7 42 42 H 1.09000 * 113.61267 * 156.25784 * 15 9 7 43 43 H 1.09007 * 109.58602 * 173.14237 * 16 6 5 44 44 H 1.08998 * 109.58683 * 293.56574 * 16 6 5 45 45 H 1.08999 * 109.56806 * 185.54751 * 17 16 6 46 46 H 1.08999 * 109.38538 * 65.51125 * 17 16 6 47 47 H 0.96999 * 119.99857 * 334.99248 * 20 18 3 48 48 H 0.96993 * 120.00154 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6350 2.1281 1.3088 6 7 2.2408 3.4660 1.3490 7 6 1.4803 4.5580 1.5625 8 8 0.2990 4.4356 1.8081 9 6 2.0979 5.9311 1.4961 10 6 3.0964 6.1886 2.6263 11 6 2.6362 6.2977 0.1031 12 6 1.2349 6.8571 -0.2029 13 9 0.3590 5.9073 -0.7392 14 9 1.2538 8.0523 -0.9298 15 6 1.0704 7.0604 1.3126 16 6 3.6906 3.5914 1.1460 17 6 4.0733 2.8890 -0.1554 18 6 3.5655 1.4457 -0.1220 19 1 3.8574 0.9369 -1.0407 20 7 4.1486 0.7497 1.0277 21 6 5.3869 0.1745 0.9240 22 1 5.9336 0.2337 -0.0055 23 6 5.9397 -0.4845 2.0136 24 7 5.2736 -0.5561 3.1465 25 14 7.6286 -1.2697 1.8719 26 1 8.6321 -0.2279 1.5358 27 1 7.9892 -1.9049 3.1648 28 1 7.6075 -2.2998 0.8025 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9912 1.5401 2.1547 35 1 0.5497 2.2167 1.3567 36 1 3.9067 5.4620 2.5679 37 1 2.5906 6.0923 3.5871 38 1 3.5033 7.1952 2.5293 39 1 3.4157 7.0593 0.1227 40 1 2.9038 5.4323 -0.5033 41 1 0.0757 6.8099 1.6812 42 1 1.4210 8.0310 1.6635 43 1 3.9610 4.6455 1.0838 44 1 4.2178 3.1252 1.9783 45 1 5.1577 2.8907 -0.2659 46 1 3.6212 3.4144 -0.9966 47 1 3.6574 0.6964 1.8625 48 1 5.6599 -1.0163 3.9080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037953039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:07 Heat of formation + Delta-G solvation = -104.797473 kcal Electronic energy + Delta-G solvation = -31170.488047 eV Core-core repulsion = 26896.975481 eV Total energy + Delta-G solvation = -4273.512566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.88776 -47.21977 -40.82605 -38.52470 -36.92661 -34.49887 -33.76203 -31.73778 -30.09022 -29.43138 -28.42030 -26.51704 -25.61550 -23.83493 -23.65639 -23.10522 -21.42701 -20.76655 -19.07656 -18.06497 -17.56806 -17.37865 -16.78899 -16.75467 -16.16551 -15.85086 -15.09137 -14.75680 -14.57124 -14.11587 -14.01602 -13.87003 -13.66012 -13.46875 -13.42231 -13.30450 -13.28902 -13.00145 -12.76231 -12.63796 -12.52611 -12.28451 -12.14046 -11.67498 -11.42457 -11.21231 -11.13067 -11.05542 -10.94879 -10.81832 -10.72058 -10.55041 -10.30166 -10.27412 -10.21603 -9.81550 -9.57939 -9.53520 -8.94972 -8.26133 -7.01224 -5.82257 -3.10820 2.68076 3.11134 3.31925 3.39085 3.44691 3.45424 3.58571 3.99913 4.05580 4.18930 4.54363 4.60883 5.02178 5.09218 5.11522 5.15689 5.24360 5.27832 5.35372 5.40041 5.48020 5.51790 5.55754 5.57282 5.64673 5.69511 5.75579 5.76608 5.83807 5.89927 5.97567 6.06695 6.14144 6.17518 6.33464 6.36213 6.39510 6.55203 6.60046 6.68160 6.74454 6.91554 6.98716 7.64834 7.66304 8.31570 8.36150 9.47888 10.04347 10.39597 11.39962 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.003959 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.586178 B = 7070.362663 C = 7891.081374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.593 5.593 7 C 0.535 3.465 8 O -0.541 6.541 9 C -0.101 4.101 10 C -0.138 4.138 11 C -0.157 4.157 12 C 0.253 3.747 13 F -0.171 7.171 14 F -0.192 7.192 15 C -0.144 4.144 16 C 0.105 3.895 17 C -0.152 4.152 18 C 0.179 3.821 19 H 0.051 0.949 20 N -0.718 5.718 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.047 0.953 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.035 14.259 -4.743 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.324 5.324 7 C 0.321 3.679 8 O -0.419 6.419 9 C -0.104 4.104 10 C -0.195 4.195 11 C -0.195 4.195 12 C 0.216 3.784 13 F -0.152 7.152 14 F -0.173 7.173 15 C -0.182 4.182 16 C -0.017 4.017 17 C -0.193 4.193 18 C 0.068 3.932 19 H 0.069 0.931 20 N -0.360 5.360 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.514 14.089 -4.672 16.210 hybrid contribution 0.878 -0.473 -0.005 0.997 sum -5.636 13.616 -4.677 15.461 Atomic orbital electron populations 1.21855 0.96805 1.01035 1.01379 1.21411 0.94290 0.95687 1.03362 1.21748 0.97355 0.96185 0.97023 0.91576 1.21709 0.98767 0.81430 0.98358 1.47990 1.08628 1.06334 1.69476 1.19627 0.86217 0.85063 0.76983 1.90666 1.15715 1.86373 1.49109 1.21670 0.97814 0.93705 0.97258 1.21861 0.98021 1.02967 0.96689 1.24390 0.95574 1.03658 0.95865 1.22087 0.91466 0.75653 0.89144 1.93067 1.70827 1.63567 1.87743 1.92997 1.96950 1.46657 1.80723 1.24069 1.02831 0.99734 0.91588 1.21913 0.79233 1.00402 1.00178 1.22488 1.01873 0.99470 0.95467 1.20209 0.89744 0.90572 0.92649 0.93112 1.42463 1.18971 1.64042 1.10542 1.19165 0.93553 1.27225 0.97033 0.91342 1.24689 0.98490 1.01413 0.96017 1.69634 1.38122 1.48051 1.02212 0.86326 0.84374 0.79215 0.76578 1.21391 1.21815 1.21373 0.93371 0.93154 0.92790 0.92025 0.90482 0.90665 0.89601 0.90286 0.91238 0.91024 0.85974 0.87918 0.87409 0.86404 0.90476 0.89523 0.90606 0.93417 0.78083 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 2 C -0.11 -1.74 5.19 -26.73 -0.14 -1.88 16 3 C -0.10 -1.65 2.14 -90.50 -0.19 -1.85 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 5 C 0.12 1.98 5.02 -3.71 -0.02 1.96 16 6 N -0.59 -9.17 2.98 -173.03 -0.52 -9.68 16 7 C 0.53 8.19 5.77 -10.98 -0.06 8.13 16 8 O -0.54 -9.95 15.28 5.56 0.08 -9.87 16 9 C -0.10 -1.14 0.71 -154.85 -0.11 -1.25 16 10 C -0.14 -1.28 8.71 37.15 0.32 -0.96 16 11 C -0.16 -1.57 5.76 -25.83 -0.15 -1.72 16 12 C 0.25 3.02 3.27 -25.82 -0.08 2.94 16 13 F -0.17 -2.59 16.48 2.25 0.04 -2.55 16 14 F -0.19 -2.32 17.41 2.25 0.04 -2.28 16 15 C -0.14 -1.51 6.90 -25.91 -0.18 -1.69 16 16 C 0.10 1.54 4.29 -3.93 -0.02 1.52 16 17 C -0.15 -2.34 5.69 -26.83 -0.15 -2.50 16 18 C 0.18 3.20 2.53 -67.89 -0.17 3.02 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 N -0.72 -15.86 3.73 -53.38 -0.20 -16.06 16 21 C -0.24 -6.03 9.93 -15.06 -0.15 -6.18 16 22 H 0.07 1.70 7.83 -52.48 -0.41 1.29 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -26.43 13.06 55.49 0.72 -25.71 16 25 Si 0.90 21.31 29.55 -169.99 -5.02 16.29 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 34 H 0.08 1.39 6.64 -51.93 -0.34 1.04 16 35 H 0.09 1.46 5.75 -51.93 -0.30 1.16 16 36 H 0.08 0.78 5.60 -51.93 -0.29 0.49 16 37 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.12 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.10 1.12 6.27 -51.93 -0.33 0.79 16 41 H 0.11 1.29 7.35 -51.93 -0.38 0.91 16 42 H 0.12 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.08 0.91 3.58 -51.92 -0.19 0.72 16 44 H 0.09 1.52 7.74 -51.93 -0.40 1.12 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.05 0.66 7.43 -51.93 -0.39 0.27 16 47 H 0.38 9.16 5.94 -40.82 -0.24 8.92 16 48 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -29.53 368.99 -7.50 -37.03 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -7.37 Total: 9.83 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.84 Total: -2.56 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.01 Total: -51.46 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.08 Total: -4.83 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.53 -7.50 -37.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037953039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.763 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds