Wall clock time and date at job start Tue Mar 31 2020 15:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 H 1.08998 * 109.49970 * 304.93703 * 3 2 1 5 5 C 1.53196 * 109.49950 * 64.99750 * 3 2 1 6 6 N 1.46921 * 108.77789 * 174.61840 * 5 3 2 7 7 C 1.34773 * 120.63099 * 126.37032 * 6 5 3 8 8 O 1.21280 * 119.99923 * 4.69125 * 7 6 5 9 9 C 1.50706 * 120.00195 * 184.68774 * 7 6 5 10 10 C 1.52993 * 112.84842 * 292.78159 * 9 7 6 11 11 C 1.53781 * 113.61148 * 63.97367 * 9 7 6 12 12 C 1.53956 * 87.01968 * 89.22759 * 11 9 7 13 13 F 1.39891 * 113.54082 * 270.81188 * 12 11 9 14 14 F 1.39901 * 113.66398 * 139.92846 * 12 11 9 15 15 C 1.53781 * 113.61282 * 161.58181 * 9 7 6 16 16 C 1.46927 * 118.73693 * 306.64402 * 6 5 3 17 17 C 1.52758 * 109.00999 * 53.31155 * 16 6 5 18 18 C 1.53036 * 109.52580 * 184.85254 * 3 2 1 19 19 H 1.08999 * 109.46300 * 58.65806 * 18 3 2 20 20 N 1.46501 * 109.46115 * 298.69034 * 18 3 2 21 21 C 1.36934 * 120.00301 * 155.00204 * 20 18 3 22 22 H 1.08003 * 119.99797 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00370 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99700 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00323 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46619 * 59.99726 * 25 23 21 27 27 H 1.48494 * 109.47021 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47291 * 300.00252 * 25 23 21 29 29 H 1.08999 * 109.46794 * 60.00231 * 1 2 3 30 30 H 1.08999 * 109.46696 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46896 * 299.99918 * 1 2 3 32 32 H 1.08999 * 109.47378 * 240.00298 * 2 1 3 33 33 H 1.08999 * 109.46794 * 119.99769 * 2 1 3 34 34 H 1.09004 * 109.58245 * 54.83267 * 5 3 2 35 35 H 1.08996 * 109.70545 * 294.48086 * 5 3 2 36 36 H 1.08997 * 109.47694 * 60.34546 * 10 9 7 37 37 H 1.09007 * 109.47196 * 300.34314 * 10 9 7 38 38 H 1.09007 * 109.47250 * 180.34764 * 10 9 7 39 39 H 1.09002 * 113.61452 * 203.74684 * 11 9 7 40 40 H 1.09003 * 113.61520 * 334.65229 * 11 9 7 41 41 H 1.08993 * 113.61755 * 25.35009 * 15 9 7 42 42 H 1.09000 * 113.61267 * 156.25784 * 15 9 7 43 43 H 1.09007 * 109.58602 * 173.14237 * 16 6 5 44 44 H 1.08998 * 109.58683 * 293.56574 * 16 6 5 45 45 H 1.08999 * 109.56806 * 185.54751 * 17 16 6 46 46 H 1.08999 * 109.38538 * 65.51125 * 17 16 6 47 47 H 0.96999 * 119.99857 * 334.99248 * 20 18 3 48 48 H 0.96993 * 120.00154 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6350 2.1281 1.3088 6 7 2.2408 3.4660 1.3490 7 6 1.4803 4.5580 1.5625 8 8 0.2990 4.4356 1.8081 9 6 2.0979 5.9311 1.4961 10 6 3.0964 6.1886 2.6263 11 6 2.6362 6.2977 0.1031 12 6 1.2349 6.8571 -0.2029 13 9 0.3590 5.9073 -0.7392 14 9 1.2538 8.0523 -0.9298 15 6 1.0704 7.0604 1.3126 16 6 3.6906 3.5914 1.1460 17 6 4.0733 2.8890 -0.1554 18 6 3.5655 1.4457 -0.1220 19 1 3.8574 0.9369 -1.0407 20 7 4.1486 0.7497 1.0277 21 6 5.3869 0.1745 0.9240 22 1 5.9336 0.2337 -0.0055 23 6 5.9397 -0.4845 2.0136 24 7 5.2736 -0.5561 3.1465 25 14 7.6286 -1.2697 1.8719 26 1 8.6321 -0.2279 1.5358 27 1 7.9892 -1.9049 3.1648 28 1 7.6075 -2.2998 0.8025 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9912 1.5401 2.1547 35 1 0.5497 2.2167 1.3567 36 1 3.9067 5.4620 2.5679 37 1 2.5906 6.0923 3.5871 38 1 3.5033 7.1952 2.5293 39 1 3.4157 7.0593 0.1227 40 1 2.9038 5.4323 -0.5033 41 1 0.0757 6.8099 1.6812 42 1 1.4210 8.0310 1.6635 43 1 3.9610 4.6455 1.0838 44 1 4.2178 3.1252 1.9783 45 1 5.1577 2.8907 -0.2659 46 1 3.6212 3.4144 -0.9966 47 1 3.6574 0.6964 1.8625 48 1 5.6599 -1.0163 3.9080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037953039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:06 Heat of formation + Delta-G solvation = -121.064367 kcal Electronic energy + Delta-G solvation = -31171.193433 eV Core-core repulsion = 26896.975481 eV Total energy + Delta-G solvation = -4274.217952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.83822 -48.18216 -41.97321 -39.78327 -38.08061 -35.91965 -35.33229 -33.40317 -31.12528 -30.87512 -29.71774 -27.33806 -26.93003 -25.51683 -25.03349 -24.18602 -22.49625 -22.05910 -20.35135 -19.35171 -19.23940 -18.49621 -17.88759 -17.68246 -17.18676 -17.00445 -16.63774 -16.11796 -16.03845 -15.61840 -15.26356 -15.02425 -14.80863 -14.78298 -14.53559 -14.44206 -14.30527 -14.21380 -14.08358 -13.68196 -13.47395 -13.32085 -13.19685 -13.02902 -12.82406 -12.78960 -12.64569 -12.36648 -12.15750 -12.11583 -11.99973 -11.91718 -11.76827 -11.58229 -11.44946 -11.40288 -11.12175 -10.87255 -10.67222 -9.60280 -8.89644 -7.85933 -5.12014 1.51251 1.51840 1.52920 1.58575 1.93268 2.46166 2.62025 2.75193 3.12863 3.17022 3.25270 3.47880 3.61771 3.82253 3.87146 4.01995 4.08460 4.19299 4.25204 4.32722 4.36724 4.42985 4.45105 4.46639 4.54217 4.60766 4.66838 4.70610 4.81356 4.86323 4.88315 4.91661 4.97021 5.00599 5.04624 5.16532 5.20790 5.24873 5.28779 5.32943 5.39489 5.51329 5.62435 5.66449 6.35306 6.44295 7.09681 7.43374 8.19227 8.43261 9.37053 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.003959 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.586178 B = 7070.362663 C = 7891.081374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.080 0.920 5 C 0.125 3.875 6 N -0.595 5.595 7 C 0.528 3.472 8 O -0.578 6.578 9 C -0.103 4.103 10 C -0.135 4.135 11 C -0.144 4.144 12 C 0.237 3.763 13 F -0.196 7.196 14 F -0.193 7.193 15 C -0.135 4.135 16 C 0.113 3.887 17 C -0.145 4.145 18 C 0.172 3.828 19 H 0.046 0.954 20 N -0.723 5.723 21 C -0.226 4.226 22 H 0.075 0.925 23 C -0.070 4.070 24 N -0.968 5.968 25 Si 0.962 3.038 26 H -0.278 1.278 27 H -0.304 1.304 28 H -0.284 1.284 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.162 0.838 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.156 0.844 43 H 0.114 0.886 44 H 0.055 0.945 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.373 0.627 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.056 16.644 -6.167 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.098 0.902 5 C 0.002 3.998 6 N -0.326 5.326 7 C 0.316 3.684 8 O -0.458 6.458 9 C -0.106 4.106 10 C -0.192 4.192 11 C -0.181 4.181 12 C 0.201 3.799 13 F -0.177 7.177 14 F -0.174 7.174 15 C -0.173 4.173 16 C -0.009 4.009 17 C -0.185 4.185 18 C 0.063 3.937 19 H 0.064 0.936 20 N -0.364 5.364 21 C -0.358 4.358 22 H 0.093 0.907 23 C -0.262 4.262 24 N -0.620 5.620 25 Si 0.792 3.208 26 H -0.204 1.204 27 H -0.230 1.230 28 H -0.211 1.211 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.128 0.872 39 H 0.180 0.820 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.174 0.826 43 H 0.131 0.869 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.207 0.793 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.526 16.504 -6.151 18.459 hybrid contribution 0.476 -1.187 0.377 1.334 sum -5.051 15.316 -5.773 17.130 Atomic orbital electron populations 1.21785 0.94951 1.01908 1.01707 1.21338 0.95911 0.95279 1.01799 1.21644 0.96112 0.96342 0.97043 0.90166 1.21491 0.98371 0.82218 0.97674 1.48046 1.09010 1.06005 1.69498 1.20431 0.85836 0.86463 0.75630 1.90646 1.17461 1.87124 1.50538 1.21649 0.98697 0.91109 0.99164 1.21900 0.96990 1.05008 0.95326 1.24483 0.95288 1.04350 0.93996 1.22491 0.92322 0.75409 0.89680 1.93017 1.71894 1.64624 1.88187 1.92994 1.96984 1.46557 1.80838 1.24156 1.01707 1.01066 0.90364 1.21871 0.78323 1.02189 0.98499 1.22364 1.01721 0.97613 0.96828 1.20432 0.90754 0.91742 0.90738 0.93566 1.42559 1.18162 1.64375 1.11310 1.19518 0.94212 1.25356 0.96712 0.90698 1.25341 1.01644 1.03162 0.96088 1.69794 1.39556 1.49834 1.02791 0.85385 0.81157 0.78451 0.75772 1.20414 1.23034 1.21107 0.92055 0.92077 0.93353 0.91901 0.93596 0.93322 0.90178 0.90982 0.92031 0.87184 0.82009 0.88497 0.89460 0.82607 0.86857 0.92657 0.90908 0.90789 0.79339 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.67 71.98 0.70 -3.27 16 2 C -0.11 -3.38 5.19 30.60 0.16 -3.22 16 3 C -0.09 -2.92 2.14 -10.72 -0.02 -2.94 16 4 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 5 C 0.13 4.27 5.02 86.36 0.43 4.71 16 6 N -0.60 -18.17 2.98 -819.73 -2.44 -20.61 16 7 C 0.53 15.77 5.77 87.66 0.51 16.27 16 8 O -0.58 -21.46 15.28 -3.03 -0.05 -21.50 16 9 C -0.10 -2.05 0.71 -52.40 -0.04 -2.09 16 10 C -0.14 -2.05 8.71 71.98 0.63 -1.42 16 11 C -0.14 -2.32 5.76 31.18 0.18 -2.14 16 12 C 0.24 5.06 3.27 31.18 0.10 5.16 16 13 F -0.20 -5.74 16.48 44.97 0.74 -5.00 16 14 F -0.19 -4.09 17.41 44.97 0.78 -3.31 16 15 C -0.14 -2.46 6.90 31.12 0.21 -2.24 16 16 C 0.11 3.16 4.29 86.22 0.37 3.53 16 17 C -0.14 -4.20 5.69 30.53 0.17 -4.02 16 18 C 0.17 6.07 2.53 45.02 0.11 6.18 16 19 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 20 N -0.72 -32.49 3.73 -322.81 -1.20 -33.69 16 21 C -0.23 -11.45 9.93 84.03 0.83 -10.61 16 22 H 0.08 3.65 7.83 -2.91 -0.02 3.62 16 23 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 24 N -0.97 -56.59 13.06 21.65 0.28 -56.31 16 25 Si 0.96 44.19 29.55 68.60 2.03 46.22 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.36 6.70 -2.39 -0.02 1.34 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.76 7.70 -2.39 -0.02 1.74 16 34 H 0.05 1.91 6.64 -2.38 -0.02 1.90 16 35 H 0.08 2.82 5.75 -2.39 -0.01 2.81 16 36 H 0.07 1.21 5.60 -2.39 -0.01 1.19 16 37 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.16 1.37 8.10 -2.39 -0.02 1.35 16 40 H 0.10 1.73 6.27 -2.39 -0.01 1.72 16 41 H 0.09 2.00 7.35 -2.39 -0.02 1.98 16 42 H 0.16 1.61 8.10 -2.39 -0.02 1.59 16 43 H 0.11 2.33 3.58 -2.38 -0.01 2.32 16 44 H 0.06 1.94 7.74 -2.39 -0.02 1.92 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.07 1.80 7.43 -2.39 -0.02 1.78 16 47 H 0.37 18.53 5.94 -92.71 -0.55 17.98 16 48 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -66.51 368.99 5.39 -61.12 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.43 Total: 32.50 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 4.82 Total: 0.58 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -3.36 Total: -110.61 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.50 kcal Atomic # 9 Polarization: -9.83 SS G_CDS: 1.52 Total: -8.31 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -66.51 5.39 -61.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037953039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.946 kcal (2) G-P(sol) polarization free energy of solvation -66.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds