Wall clock time and date at job start Tue Mar 31 2020 15:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46968 * 2 1 4 4 H 1.08992 * 109.52543 * 305.08561 * 3 2 1 5 5 C 1.53195 * 109.49583 * 65.16682 * 3 2 1 6 6 N 1.46920 * 108.77790 * 174.58505 * 5 3 2 7 7 C 1.34772 * 120.63222 * 126.36309 * 6 5 3 8 8 O 1.21283 * 120.00341 * 175.42198 * 7 6 5 9 9 C 1.50698 * 119.99982 * 355.42412 * 7 6 5 10 10 C 1.53005 * 112.85135 * 67.77633 * 9 7 6 11 11 C 1.53777 * 113.61534 * 296.57997 * 9 7 6 12 12 C 1.53956 * 87.02169 * 220.04814 * 11 9 7 13 13 F 1.39902 * 113.53515 * 270.81248 * 12 11 9 14 14 F 1.39897 * 113.74571 * 139.94416 * 12 11 9 15 15 C 1.53784 * 87.11254 * 25.36205 * 12 11 9 16 16 C 1.46930 * 118.73717 * 306.39454 * 6 5 3 17 17 C 1.53188 * 108.78097 * 53.60479 * 16 6 5 18 18 C 1.53038 * 109.49550 * 185.00067 * 3 2 1 19 19 H 1.09000 * 109.45454 * 298.69730 * 18 3 2 20 20 N 1.46498 * 109.46009 * 58.66715 * 18 3 2 21 21 C 1.36941 * 120.00067 * 205.06431 * 20 18 3 22 22 H 1.08004 * 119.99617 * 0.02562 * 21 20 18 23 23 C 1.38808 * 119.99979 * 179.97438 * 21 20 18 24 24 N 1.31622 * 119.99802 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00217 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47116 * 89.99729 * 25 23 21 27 27 H 1.48495 * 109.47094 * 330.00184 * 25 23 21 28 28 H 1.48494 * 109.47317 * 209.99812 * 25 23 21 29 29 H 1.09000 * 109.46783 * 299.99318 * 1 2 3 30 30 H 1.08994 * 109.47301 * 59.99537 * 1 2 3 31 31 H 1.09005 * 109.46637 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47155 * 240.00551 * 2 1 3 33 33 H 1.09000 * 109.47436 * 120.00009 * 2 1 3 34 34 H 1.09004 * 109.58738 * 54.79307 * 5 3 2 35 35 H 1.09001 * 109.69952 * 294.44337 * 5 3 2 36 36 H 1.08999 * 109.46716 * 66.36326 * 10 9 7 37 37 H 1.09003 * 109.47207 * 186.36681 * 10 9 7 38 38 H 1.08994 * 109.46764 * 306.36699 * 10 9 7 39 39 H 1.09003 * 113.61108 * 334.56579 * 11 9 7 40 40 H 1.09002 * 113.61886 * 105.47223 * 11 9 7 41 41 H 1.08997 * 113.61548 * 220.09461 * 15 12 11 42 42 H 1.08996 * 113.69142 * 89.19604 * 15 12 11 43 43 H 1.09004 * 109.58376 * 293.81492 * 16 6 5 44 44 H 1.09002 * 109.58283 * 173.39343 * 16 6 5 45 45 H 1.08995 * 109.50294 * 185.41678 * 17 16 6 46 46 H 1.09002 * 109.49412 * 65.31296 * 17 16 6 47 47 H 0.97000 * 120.00481 * 25.06680 * 20 18 3 48 48 H 0.97004 * 119.99690 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9828 -0.8406 5 6 1.6386 2.1267 1.3106 6 7 2.2451 3.4643 1.3509 7 6 1.4856 4.5564 1.5675 8 8 2.0076 5.6452 1.6812 9 6 -0.0122 4.4247 1.6683 10 6 -0.4589 3.6630 2.9178 11 6 -0.6754 3.9266 0.3733 12 6 -1.7986 4.9417 0.6531 13 9 -2.8350 4.4257 1.4384 14 9 -2.2604 5.6005 -0.4913 15 6 -0.7630 5.7495 1.4532 16 6 3.6952 3.5888 1.1499 17 6 4.0737 2.8883 -0.1588 18 6 3.5652 1.4451 -0.1258 19 1 4.0007 0.9262 0.7282 20 7 3.9541 0.7622 -1.3621 21 6 5.1917 0.1853 -1.4655 22 1 5.8810 0.2334 -0.6353 23 6 5.5600 -0.4622 -2.6367 24 7 6.7494 -1.0172 -2.7359 25 14 4.3677 -0.5461 -4.0722 26 1 4.5700 0.6321 -4.9532 27 1 2.9743 -0.5467 -3.5589 28 1 4.6109 -1.7901 -4.8457 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 1.9965 1.5376 2.1549 35 1 0.5534 2.2159 1.3612 36 1 -0.2101 4.2441 3.8058 37 1 -1.5362 3.5015 2.8792 38 1 0.0515 2.7008 2.9585 39 1 -0.0999 4.1489 -0.5253 40 1 -1.0024 2.8880 0.4217 41 1 -1.1606 6.1802 2.3722 42 1 -0.2110 6.4715 0.8516 43 1 4.2209 3.1189 1.9812 44 1 3.9669 4.6428 1.0920 45 1 5.1577 2.8895 -0.2719 46 1 3.6191 3.4149 -0.9979 47 1 3.3350 0.7186 -2.1076 48 1 7.0069 -1.4693 -3.5545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037953042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:10 Heat of formation + Delta-G solvation = -103.965402 kcal Electronic energy + Delta-G solvation = -30801.007832 eV Core-core repulsion = 26527.531348 eV Total energy + Delta-G solvation = -4273.476485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.15680 -47.46614 -41.02778 -38.58687 -37.37065 -34.84557 -33.92386 -32.06091 -30.49815 -29.36725 -28.92412 -26.75607 -25.80480 -24.48232 -23.83097 -22.45280 -21.18454 -20.55048 -19.95716 -18.93655 -18.17960 -17.51225 -17.07127 -16.96020 -16.20341 -15.73511 -15.37274 -15.00650 -14.48417 -14.40480 -14.34995 -14.27919 -14.00726 -13.87829 -13.77761 -13.53941 -13.33277 -13.02712 -12.83525 -12.55920 -12.53444 -12.46463 -12.21471 -12.07870 -11.80961 -11.59099 -11.56185 -11.36387 -11.07764 -11.03432 -10.85706 -10.77400 -10.53168 -10.41643 -10.29941 -9.95088 -9.68469 -9.61064 -8.98082 -8.63717 -7.33070 -5.82790 -3.18694 2.43274 2.82095 3.11383 3.31281 3.34819 3.39495 3.41094 3.79103 3.83003 4.01720 4.38917 4.53196 4.66999 4.76301 4.86057 4.92852 5.03278 5.06773 5.13362 5.21457 5.23001 5.31138 5.37305 5.38453 5.42483 5.45513 5.47996 5.52337 5.62361 5.65720 5.76857 5.83544 5.85589 5.91899 6.02613 6.11073 6.16345 6.27041 6.34922 6.46766 6.59844 6.75119 6.87913 7.33873 7.92591 8.03878 8.36133 9.14130 9.86694 10.06002 11.35485 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.003653 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.244411 B = 7662.386984 C = 8204.685001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.110 4.110 4 H 0.070 0.930 5 C 0.105 3.895 6 N -0.600 5.600 7 C 0.535 3.465 8 O -0.541 6.541 9 C -0.101 4.101 10 C -0.144 4.144 11 C -0.153 4.153 12 C 0.256 3.744 13 F -0.176 7.176 14 F -0.187 7.187 15 C -0.136 4.136 16 C 0.112 3.888 17 C -0.151 4.151 18 C 0.189 3.811 19 H 0.057 0.943 20 N -0.745 5.745 21 C -0.244 4.244 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.933 5.933 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.277 1.277 28 H -0.291 1.291 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.057 0.943 47 H 0.361 0.639 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.177 8.952 10.976 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.130 4.130 4 H 0.089 0.911 5 C -0.018 4.018 6 N -0.331 5.331 7 C 0.322 3.678 8 O -0.418 6.418 9 C -0.105 4.105 10 C -0.201 4.201 11 C -0.191 4.191 12 C 0.220 3.780 13 F -0.157 7.157 14 F -0.168 7.168 15 C -0.174 4.174 16 C -0.011 4.011 17 C -0.192 4.192 18 C 0.079 3.921 19 H 0.075 0.925 20 N -0.386 5.386 21 C -0.373 4.373 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.580 5.580 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.203 1.203 28 H -0.218 1.218 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.140 0.860 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.194 0.806 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.671 9.417 11.063 22.876 hybrid contribution -0.877 -0.204 -1.309 1.589 sum -18.547 9.212 9.754 22.892 Atomic orbital electron populations 1.21884 0.96739 1.01551 1.01060 1.21495 0.94387 0.95711 1.03769 1.21856 0.98124 0.96284 0.96723 0.91146 1.22165 0.98605 0.82472 0.98587 1.48105 1.08666 1.06470 1.69908 1.19887 0.87661 0.83994 0.76299 1.90694 1.74067 1.26443 1.50587 1.21808 0.93159 0.98141 0.97368 1.21927 1.03073 1.00380 0.94753 1.24322 0.94785 1.00802 0.99219 1.22002 0.82731 0.93389 0.79905 1.92993 1.61494 1.87335 1.73899 1.93026 1.90934 1.81767 1.51089 1.24019 0.94233 0.97067 1.02127 1.21752 0.78552 1.02277 0.98487 1.22646 1.02729 0.98384 0.95404 1.20158 0.90396 0.90850 0.90717 0.92489 1.42758 1.16540 1.66316 1.13025 1.19043 0.90466 1.27331 1.00490 0.89202 1.24651 0.96394 1.00210 0.97642 1.69697 1.19337 1.41478 1.27519 0.86599 0.81052 0.77359 0.83747 1.21173 1.20330 1.21785 0.93226 0.92973 0.92782 0.90212 0.91783 0.90915 0.89225 0.90924 0.90115 0.90539 0.86383 0.87648 0.88154 0.86018 0.91451 0.89509 0.90022 0.92375 0.80644 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.68 37.16 0.36 -1.18 16 2 C -0.12 -1.48 5.31 -26.73 -0.14 -1.62 16 3 C -0.11 -1.43 1.92 -90.50 -0.17 -1.60 16 4 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 5 C 0.10 1.09 3.85 -3.71 -0.01 1.08 16 6 N -0.60 -7.25 2.97 -172.77 -0.51 -7.77 16 7 C 0.53 6.66 6.68 -10.99 -0.07 6.58 16 8 O -0.54 -8.52 15.63 5.56 0.09 -8.44 16 9 C -0.10 -0.94 0.70 -154.84 -0.11 -1.05 16 10 C -0.14 -1.07 8.59 37.16 0.32 -0.75 16 11 C -0.15 -1.33 5.78 -25.83 -0.15 -1.48 16 12 C 0.26 2.40 3.27 -25.83 -0.08 2.31 16 13 F -0.18 -1.70 15.49 2.25 0.03 -1.66 16 14 F -0.19 -2.08 17.41 2.25 0.04 -2.04 16 15 C -0.14 -1.23 6.68 -25.91 -0.17 -1.41 16 16 C 0.11 1.51 6.42 -3.71 -0.02 1.49 16 17 C -0.15 -2.40 5.66 -26.61 -0.15 -2.55 16 18 C 0.19 3.17 2.19 -67.89 -0.15 3.02 16 19 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 20 N -0.74 -15.97 4.13 -53.38 -0.22 -16.19 16 21 C -0.24 -6.42 10.41 -15.06 -0.16 -6.58 16 22 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -28.42 13.97 55.49 0.78 -27.65 16 25 Si 0.88 21.31 27.74 -169.99 -4.71 16.60 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H 0.05 0.39 6.70 -51.93 -0.35 0.05 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.27 7.22 -51.93 -0.37 0.90 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.75 2.02 -51.93 -0.10 0.65 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.54 6.17 -51.93 -0.32 0.22 16 38 H 0.08 0.52 5.69 -51.93 -0.30 0.23 16 39 H 0.12 1.09 8.09 -51.93 -0.42 0.67 16 40 H 0.11 0.77 7.22 -51.93 -0.37 0.39 16 41 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 42 H 0.12 1.20 7.75 -51.93 -0.40 0.80 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.24 7.03 -51.93 -0.37 0.88 16 45 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.36 7.74 5.38 -40.82 -0.22 7.52 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -31.08 369.82 -7.22 -38.30 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.46 Total: 6.90 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -0.82 Total: -3.62 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.04 Total: -51.60 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.07 Total: -3.71 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.08 -7.22 -38.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037953042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.670 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds