Wall clock time and date at job start Tue Mar 31 2020 15:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46968 * 2 1 4 4 H 1.08992 * 109.52543 * 305.08561 * 3 2 1 5 5 C 1.53195 * 109.49583 * 65.16682 * 3 2 1 6 6 N 1.46920 * 108.77790 * 174.58505 * 5 3 2 7 7 C 1.34772 * 120.63222 * 126.36309 * 6 5 3 8 8 O 1.21283 * 120.00341 * 175.42198 * 7 6 5 9 9 C 1.50698 * 119.99982 * 355.42412 * 7 6 5 10 10 C 1.53005 * 112.85135 * 67.77633 * 9 7 6 11 11 C 1.53777 * 113.61534 * 296.57997 * 9 7 6 12 12 C 1.53956 * 87.02169 * 220.04814 * 11 9 7 13 13 F 1.39902 * 113.53515 * 270.81248 * 12 11 9 14 14 F 1.39897 * 113.74571 * 139.94416 * 12 11 9 15 15 C 1.53784 * 87.11254 * 25.36205 * 12 11 9 16 16 C 1.46930 * 118.73717 * 306.39454 * 6 5 3 17 17 C 1.53188 * 108.78097 * 53.60479 * 16 6 5 18 18 C 1.53038 * 109.49550 * 185.00067 * 3 2 1 19 19 H 1.09000 * 109.45454 * 298.69730 * 18 3 2 20 20 N 1.46498 * 109.46009 * 58.66715 * 18 3 2 21 21 C 1.36941 * 120.00067 * 205.06431 * 20 18 3 22 22 H 1.08004 * 119.99617 * 0.02562 * 21 20 18 23 23 C 1.38808 * 119.99979 * 179.97438 * 21 20 18 24 24 N 1.31622 * 119.99802 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00217 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47116 * 89.99729 * 25 23 21 27 27 H 1.48495 * 109.47094 * 330.00184 * 25 23 21 28 28 H 1.48494 * 109.47317 * 209.99812 * 25 23 21 29 29 H 1.09000 * 109.46783 * 299.99318 * 1 2 3 30 30 H 1.08994 * 109.47301 * 59.99537 * 1 2 3 31 31 H 1.09005 * 109.46637 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47155 * 240.00551 * 2 1 3 33 33 H 1.09000 * 109.47436 * 120.00009 * 2 1 3 34 34 H 1.09004 * 109.58738 * 54.79307 * 5 3 2 35 35 H 1.09001 * 109.69952 * 294.44337 * 5 3 2 36 36 H 1.08999 * 109.46716 * 66.36326 * 10 9 7 37 37 H 1.09003 * 109.47207 * 186.36681 * 10 9 7 38 38 H 1.08994 * 109.46764 * 306.36699 * 10 9 7 39 39 H 1.09003 * 113.61108 * 334.56579 * 11 9 7 40 40 H 1.09002 * 113.61886 * 105.47223 * 11 9 7 41 41 H 1.08997 * 113.61548 * 220.09461 * 15 12 11 42 42 H 1.08996 * 113.69142 * 89.19604 * 15 12 11 43 43 H 1.09004 * 109.58376 * 293.81492 * 16 6 5 44 44 H 1.09002 * 109.58283 * 173.39343 * 16 6 5 45 45 H 1.08995 * 109.50294 * 185.41678 * 17 16 6 46 46 H 1.09002 * 109.49412 * 65.31296 * 17 16 6 47 47 H 0.97000 * 120.00481 * 25.06680 * 20 18 3 48 48 H 0.97004 * 119.99690 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9828 -0.8406 5 6 1.6386 2.1267 1.3106 6 7 2.2451 3.4643 1.3509 7 6 1.4856 4.5564 1.5675 8 8 2.0076 5.6452 1.6812 9 6 -0.0122 4.4247 1.6683 10 6 -0.4589 3.6630 2.9178 11 6 -0.6754 3.9266 0.3733 12 6 -1.7986 4.9417 0.6531 13 9 -2.8350 4.4257 1.4384 14 9 -2.2604 5.6005 -0.4913 15 6 -0.7630 5.7495 1.4532 16 6 3.6952 3.5888 1.1499 17 6 4.0737 2.8883 -0.1588 18 6 3.5652 1.4451 -0.1258 19 1 4.0007 0.9262 0.7282 20 7 3.9541 0.7622 -1.3621 21 6 5.1917 0.1853 -1.4655 22 1 5.8810 0.2334 -0.6353 23 6 5.5600 -0.4622 -2.6367 24 7 6.7494 -1.0172 -2.7359 25 14 4.3677 -0.5461 -4.0722 26 1 4.5700 0.6321 -4.9532 27 1 2.9743 -0.5467 -3.5589 28 1 4.6109 -1.7901 -4.8457 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 1.9965 1.5376 2.1549 35 1 0.5534 2.2159 1.3612 36 1 -0.2101 4.2441 3.8058 37 1 -1.5362 3.5015 2.8792 38 1 0.0515 2.7008 2.9585 39 1 -0.0999 4.1489 -0.5253 40 1 -1.0024 2.8880 0.4217 41 1 -1.1606 6.1802 2.3722 42 1 -0.2110 6.4715 0.8516 43 1 4.2209 3.1189 1.9812 44 1 3.9669 4.6428 1.0920 45 1 5.1577 2.8895 -0.2719 46 1 3.6191 3.4149 -0.9979 47 1 3.3350 0.7186 -2.1076 48 1 7.0069 -1.4693 -3.5545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037953042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:09 Heat of formation + Delta-G solvation = -122.218699 kcal Electronic energy + Delta-G solvation = -30801.799355 eV Core-core repulsion = 26527.531348 eV Total energy + Delta-G solvation = -4274.268007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.89793 -48.22402 -41.96816 -39.67999 -38.32239 -36.31169 -35.11669 -33.77262 -31.95991 -30.28163 -29.88671 -27.45123 -27.03198 -25.52382 -25.01554 -23.81324 -22.34942 -21.54214 -21.15899 -20.01033 -19.38549 -18.86449 -17.87073 -17.79268 -17.08706 -16.73054 -16.62533 -16.30928 -16.00561 -15.33563 -15.24761 -15.18362 -15.11929 -14.84507 -14.64634 -14.60658 -14.51632 -14.26231 -13.99946 -13.85040 -13.39417 -13.28279 -13.24252 -13.03912 -12.92635 -12.88240 -12.69501 -12.50904 -12.25835 -12.19283 -12.01421 -11.97332 -11.84049 -11.57894 -11.51006 -11.43600 -11.18952 -10.90275 -10.67568 -9.71703 -9.26485 -7.99882 -5.31891 1.37341 1.40370 1.47117 1.48034 1.86394 2.38923 2.49602 2.68582 3.07483 3.11489 3.25229 3.32215 3.52152 3.60949 3.75061 3.95020 4.01449 4.04648 4.26374 4.27432 4.31032 4.39257 4.40351 4.49328 4.54416 4.61062 4.63169 4.65037 4.77322 4.81010 4.85018 4.88040 4.92955 4.94997 4.96916 5.11910 5.15597 5.24765 5.35108 5.38849 5.49990 5.50951 5.66093 5.80836 6.24369 6.36240 7.05322 7.11182 7.87880 8.05979 9.21917 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.003653 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.244411 B = 7662.386984 C = 8204.685001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.100 4.100 4 H 0.072 0.928 5 C 0.109 3.891 6 N -0.599 5.599 7 C 0.534 3.466 8 O -0.577 6.577 9 C -0.096 4.096 10 C -0.143 4.143 11 C -0.150 4.150 12 C 0.258 3.742 13 F -0.175 7.175 14 F -0.199 7.199 15 C -0.138 4.138 16 C 0.120 3.880 17 C -0.141 4.141 18 C 0.182 3.818 19 H 0.047 0.953 20 N -0.745 5.745 21 C -0.220 4.220 22 H 0.057 0.943 23 C -0.063 4.063 24 N -0.986 5.986 25 Si 0.948 3.052 26 H -0.286 1.286 27 H -0.247 1.247 28 H -0.300 1.300 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.364 0.636 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.760 9.092 12.036 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.120 4.120 4 H 0.091 0.909 5 C -0.013 4.013 6 N -0.330 5.330 7 C 0.322 3.678 8 O -0.457 6.457 9 C -0.099 4.099 10 C -0.200 4.200 11 C -0.188 4.188 12 C 0.221 3.779 13 F -0.156 7.156 14 F -0.180 7.180 15 C -0.176 4.176 16 C -0.003 4.003 17 C -0.182 4.182 18 C 0.074 3.926 19 H 0.065 0.935 20 N -0.387 5.387 21 C -0.351 4.351 22 H 0.075 0.925 23 C -0.254 4.254 24 N -0.637 5.637 25 Si 0.776 3.224 26 H -0.213 1.213 27 H -0.171 1.171 28 H -0.227 1.227 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.146 0.854 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.197 0.803 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.318 9.578 12.163 26.347 hybrid contribution 0.298 -0.177 -1.537 1.576 sum -21.020 9.400 10.626 25.360 Atomic orbital electron populations 1.21860 0.93908 1.02427 1.02611 1.21442 0.96856 0.94708 1.02218 1.21749 0.94556 0.97219 0.98460 0.90914 1.22291 1.00213 0.81338 0.97438 1.48126 1.07891 1.07308 1.69637 1.20442 0.88952 0.83207 0.75154 1.90684 1.75054 1.27847 1.52144 1.21828 0.90483 0.98801 0.98809 1.21980 1.03927 1.00500 0.93557 1.24356 0.94073 1.01875 0.98529 1.22010 0.82711 0.93617 0.79543 1.92997 1.61511 1.87268 1.73797 1.93005 1.91084 1.82112 1.51820 1.24031 0.94062 0.96985 1.02572 1.21523 0.80062 1.01422 0.97258 1.22447 1.00936 0.98009 0.96764 1.20405 0.93566 0.90349 0.88286 0.93468 1.42747 1.14798 1.66349 1.14849 1.18997 0.91511 1.25581 0.98980 0.92452 1.25405 0.98198 1.01022 1.00775 1.69880 1.21855 1.43730 1.28243 0.85517 0.80355 0.76589 0.79958 1.21264 1.17113 1.22700 0.90473 0.92576 0.92398 0.93588 0.91641 0.89399 0.86305 0.90709 0.88842 0.89451 0.86923 0.85414 0.86836 0.87250 0.90422 0.90341 0.92682 0.93018 0.80297 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.68 71.98 0.70 -1.63 16 2 C -0.11 -2.61 5.31 30.60 0.16 -2.44 16 3 C -0.10 -2.34 1.92 -10.71 -0.02 -2.36 16 4 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 5 C 0.11 1.88 3.85 86.36 0.33 2.22 16 6 N -0.60 -13.08 2.97 -818.90 -2.43 -15.52 16 7 C 0.53 12.12 6.68 87.66 0.59 12.71 16 8 O -0.58 -17.63 15.63 -3.04 -0.05 -17.67 16 9 C -0.10 -1.47 0.70 -52.40 -0.04 -1.51 16 10 C -0.14 -1.49 8.59 71.98 0.62 -0.87 16 11 C -0.15 -2.06 5.78 31.18 0.18 -1.88 16 12 C 0.26 4.08 3.27 31.18 0.10 4.18 16 13 F -0.17 -2.74 15.49 44.97 0.70 -2.04 16 14 F -0.20 -4.03 17.41 44.97 0.78 -3.25 16 15 C -0.14 -2.19 6.68 31.12 0.21 -1.98 16 16 C 0.12 3.16 6.42 86.36 0.55 3.71 16 17 C -0.14 -4.48 5.66 30.67 0.17 -4.31 16 18 C 0.18 6.00 2.19 45.02 0.10 6.10 16 19 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 20 N -0.75 -31.83 4.13 -322.80 -1.33 -33.16 16 21 C -0.22 -11.87 10.41 84.03 0.87 -10.99 16 22 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 23 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 24 N -0.99 -62.26 13.97 21.65 0.30 -61.96 16 25 Si 0.95 44.37 27.74 68.60 1.90 46.28 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 H -0.25 -10.17 6.52 99.48 0.65 -9.53 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 29 H 0.08 0.77 6.70 -2.39 -0.02 0.75 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.05 1.37 7.22 -2.38 -0.02 1.36 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.12 1.39 2.02 -2.39 0.00 1.39 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 0.80 6.17 -2.39 -0.01 0.79 16 38 H 0.09 0.73 5.69 -2.39 -0.01 0.72 16 39 H 0.11 1.74 8.09 -2.39 -0.02 1.72 16 40 H 0.13 1.18 7.22 -2.39 -0.02 1.16 16 41 H 0.11 1.47 8.10 -2.39 -0.02 1.45 16 42 H 0.11 2.04 7.75 -2.39 -0.02 2.02 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.08 2.23 7.03 -2.39 -0.02 2.22 16 45 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.36 15.13 5.38 -92.71 -0.50 14.64 16 48 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -70.22 369.82 5.28 -64.93 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.42 Total: 24.59 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 5.00 Total: -2.20 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.47 Total: -110.64 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 1.48 Total: -5.29 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.90 Total: 46.28 kcal Total: -70.22 5.28 -64.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037953042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.287 kcal (2) G-P(sol) polarization free energy of solvation -70.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds