Wall clock time and date at job start Tue Mar 31 2020 15:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47220 * 2 1 4 4 H 1.09006 * 109.52350 * 54.91648 * 3 2 1 5 5 C 1.53196 * 109.49864 * 294.83863 * 3 2 1 6 6 N 1.46924 * 108.77570 * 185.41466 * 5 3 2 7 7 C 1.34783 * 120.62713 * 233.58502 * 6 5 3 8 8 O 1.21277 * 120.00134 * 354.32903 * 7 6 5 9 9 C 1.50700 * 119.99551 * 174.32428 * 7 6 5 10 10 C 1.52996 * 112.85272 * 291.24581 * 9 7 6 11 11 C 1.53778 * 113.60880 * 159.94074 * 9 7 6 12 12 C 1.53786 * 87.08021 * 220.01730 * 11 9 7 13 13 F 1.39893 * 113.61694 * 270.88565 * 12 11 9 14 14 F 1.39906 * 113.60997 * 139.98047 * 12 11 9 15 15 C 1.53784 * 113.61203 * 62.44521 * 9 7 6 16 16 C 1.46918 * 118.74127 * 53.60676 * 6 5 3 17 17 C 1.53197 * 108.77468 * 306.39125 * 16 6 5 18 18 C 1.53035 * 109.49842 * 174.99654 * 3 2 1 19 19 H 1.09003 * 109.44634 * 61.30889 * 18 3 2 20 20 N 1.46492 * 109.46411 * 301.33914 * 18 3 2 21 21 C 1.36936 * 120.00603 * 154.92790 * 20 18 3 22 22 H 1.08000 * 119.99561 * 0.02562 * 21 20 18 23 23 C 1.38808 * 120.00754 * 180.02562 * 21 20 18 24 24 N 1.31628 * 119.99482 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00551 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47283 * 180.02562 * 25 23 21 27 27 H 1.48504 * 109.46462 * 299.99801 * 25 23 21 28 28 H 1.48501 * 109.47026 * 59.99754 * 25 23 21 29 29 H 1.09000 * 109.47306 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47139 * 300.00121 * 1 2 3 31 31 H 1.09001 * 109.46985 * 59.99841 * 1 2 3 32 32 H 1.09001 * 109.47139 * 239.99879 * 2 1 3 33 33 H 1.09002 * 109.47229 * 119.99666 * 2 1 3 34 34 H 1.08997 * 109.58472 * 65.62376 * 5 3 2 35 35 H 1.08995 * 109.58351 * 305.20133 * 5 3 2 36 36 H 1.09003 * 109.46760 * 65.56140 * 10 9 7 37 37 H 1.08995 * 109.47124 * 185.56449 * 10 9 7 38 38 H 1.09003 * 109.47388 * 305.56297 * 10 9 7 39 39 H 1.09004 * 113.61813 * 334.56375 * 11 9 7 40 40 H 1.09003 * 113.61721 * 105.47348 * 11 9 7 41 41 H 1.08999 * 113.61411 * 254.52208 * 15 9 7 42 42 H 1.08998 * 113.61540 * 25.43231 * 15 9 7 43 43 H 1.08995 * 109.58886 * 186.60622 * 16 6 5 44 44 H 1.08996 * 109.70652 * 66.24557 * 16 6 5 45 45 H 1.08998 * 109.50056 * 294.68172 * 17 16 6 46 46 H 1.09009 * 109.49294 * 174.58470 * 17 16 6 47 47 H 0.97004 * 120.00057 * 334.92959 * 20 18 3 48 48 H 0.96999 * 119.99625 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6386 2.1268 -1.3105 6 7 2.2452 3.4644 -1.3507 7 6 1.4858 4.5565 -1.5682 8 8 0.3091 4.4336 -1.8348 9 6 2.0990 5.9302 -1.4798 10 6 2.4979 6.3123 -0.0531 11 6 1.2863 7.0153 -2.2057 12 6 2.6301 7.5938 -2.6795 13 9 3.1805 8.5286 -1.7962 14 9 2.6110 8.0422 -4.0047 15 6 3.2075 6.1779 -2.5167 16 6 3.6953 3.5888 -1.1498 17 6 4.0737 2.8881 0.1589 18 6 3.5652 1.4450 0.1258 19 1 4.0007 0.9262 -0.7282 20 7 3.9542 0.7621 1.3621 21 6 5.1917 0.1851 1.4654 22 1 5.8812 0.2339 0.6356 23 6 5.5601 -0.4625 2.6366 24 7 4.7199 -0.5216 3.6481 25 14 7.2486 -1.2490 2.7778 26 1 7.3941 -1.8718 4.1179 27 1 7.3987 -2.2903 1.7296 28 1 8.2949 -0.2107 2.5976 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5534 2.2161 -1.3585 35 1 1.9965 1.5377 -2.1548 36 1 3.2999 5.6573 0.2876 37 1 2.8415 7.3465 -0.0364 38 1 1.6365 6.2050 0.6062 39 1 0.6674 6.6289 -3.0156 40 1 0.7399 7.6755 -1.5321 41 1 4.2121 6.1620 -2.0940 42 1 3.1138 5.5625 -3.4114 43 1 3.9671 4.6427 -1.0918 44 1 4.2229 3.1206 -1.9807 45 1 3.6193 3.4148 0.9981 46 1 5.1579 2.8894 0.2719 47 1 3.3351 0.7185 2.1075 48 1 4.9772 -0.9744 4.4664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037953053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:13 Heat of formation + Delta-G solvation = -108.349798 kcal Electronic energy + Delta-G solvation = -30301.990739 eV Core-core repulsion = 26028.324132 eV Total energy + Delta-G solvation = -4273.666607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.13156 -47.44708 -40.93045 -38.53168 -37.18184 -34.81656 -33.81473 -31.77488 -29.98177 -29.51743 -28.62601 -26.70252 -25.70571 -24.14027 -23.74074 -22.80223 -21.04492 -20.74669 -19.64453 -18.78833 -18.02810 -17.16337 -16.97623 -16.90562 -16.12995 -15.71967 -15.34137 -14.96664 -14.52996 -14.29364 -14.20556 -14.13267 -13.83116 -13.77437 -13.64030 -13.39185 -13.24103 -13.00454 -12.80076 -12.54787 -12.51730 -12.28881 -12.02984 -11.86569 -11.66312 -11.47109 -11.34478 -11.25825 -10.96426 -10.91486 -10.75324 -10.68405 -10.39192 -10.27440 -10.20300 -9.81527 -9.67076 -9.64578 -8.94144 -8.55489 -7.01522 -5.82051 -3.11055 2.48015 2.90081 3.14813 3.39308 3.42594 3.44369 3.45394 3.83752 3.87462 4.05690 4.49534 4.53336 4.76436 4.93737 4.99880 5.07648 5.14548 5.19482 5.20735 5.29054 5.32346 5.39122 5.48786 5.54217 5.55270 5.56778 5.63703 5.64225 5.67565 5.83590 5.89291 6.00020 6.07011 6.11461 6.26109 6.30662 6.34573 6.40921 6.50111 6.61902 6.77274 6.90680 6.99847 7.41213 7.63608 8.09724 8.36098 9.47623 10.04573 10.39316 11.40202 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.003299 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.521434 B = 8485.626001 C = 9708.710014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.599 5.599 7 C 0.535 3.465 8 O -0.543 6.543 9 C -0.099 4.099 10 C -0.141 4.141 11 C -0.137 4.137 12 C 0.256 3.744 13 F -0.175 7.175 14 F -0.189 7.189 15 C -0.155 4.155 16 C 0.097 3.903 17 C -0.152 4.152 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.292 1.292 27 H -0.286 1.286 28 H -0.286 1.286 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 13.358 -12.163 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.330 5.330 7 C 0.322 3.678 8 O -0.421 6.421 9 C -0.102 4.102 10 C -0.198 4.198 11 C -0.175 4.175 12 C 0.219 3.781 13 F -0.156 7.156 14 F -0.170 7.170 15 C -0.193 4.193 16 C -0.026 4.026 17 C -0.194 4.194 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.360 5.360 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.213 1.213 28 H -0.213 1.213 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.135 0.865 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.218 0.782 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.059 13.219 -12.310 19.052 hybrid contribution 1.014 -0.278 0.430 1.136 sum -5.045 12.941 -11.880 18.277 Atomic orbital electron populations 1.21845 0.96804 1.01082 1.01270 1.21453 0.94373 0.95663 1.03508 1.21784 0.97698 0.96291 0.96628 0.91209 1.21785 0.99349 0.81315 0.97905 1.48088 1.08572 1.06599 1.69779 1.19898 0.86220 0.85185 0.76504 1.90683 1.16098 1.86567 1.48709 1.21803 0.96954 0.93841 0.97619 1.21850 1.03039 1.03281 0.91669 1.24019 0.95092 0.96427 1.01967 1.21975 0.97485 0.85556 0.73044 1.93000 1.86935 1.68139 1.67534 1.93019 1.97102 1.91315 1.35544 1.24340 1.00615 0.93381 1.00978 1.22132 0.79392 1.01679 0.99429 1.22711 1.02277 0.99365 0.95010 1.20173 0.90744 0.90510 0.91245 0.93449 1.42395 1.16501 1.64441 1.12657 1.19157 0.91832 1.27556 0.98608 0.91311 1.24719 0.98094 1.01447 0.96417 1.69649 1.35305 1.48247 1.04753 0.86311 0.84144 0.79200 0.76766 1.21748 1.21301 1.21316 0.93142 0.93004 0.93238 0.92449 0.89748 0.89174 0.91601 0.90274 0.90251 0.90998 0.86125 0.88144 0.87546 0.86487 0.89860 0.91357 0.92064 0.90520 0.78192 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.68 37.16 0.36 -1.68 16 2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.88 16 3 C -0.10 -1.60 1.92 -90.50 -0.17 -1.78 16 4 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 5 C 0.12 1.61 5.31 -3.71 -0.02 1.59 16 6 N -0.60 -7.60 2.97 -172.78 -0.51 -8.11 16 7 C 0.53 6.93 6.67 -10.98 -0.07 6.86 16 8 O -0.54 -8.69 15.67 5.56 0.09 -8.60 16 9 C -0.10 -0.98 0.70 -154.85 -0.11 -1.09 16 10 C -0.14 -1.33 8.74 37.16 0.32 -1.00 16 11 C -0.14 -1.28 6.68 -25.92 -0.17 -1.45 16 12 C 0.26 2.40 3.27 -25.91 -0.08 2.32 16 13 F -0.18 -1.78 15.49 2.25 0.03 -1.74 16 14 F -0.19 -2.02 17.41 2.25 0.04 -1.98 16 15 C -0.16 -1.30 5.41 -25.92 -0.14 -1.44 16 16 C 0.10 1.12 5.28 -3.71 -0.02 1.10 16 17 C -0.15 -2.32 5.62 -26.61 -0.15 -2.46 16 18 C 0.18 3.24 2.19 -67.90 -0.15 3.09 16 19 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 20 N -0.72 -16.46 4.33 -53.39 -0.23 -16.69 16 21 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 25 Si 0.90 21.53 29.55 -169.99 -5.02 16.50 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.58 7.22 -51.93 -0.37 1.21 16 34 H 0.09 1.29 5.76 -51.93 -0.30 0.99 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.76 6.13 -51.93 -0.32 0.44 16 37 H 0.08 0.67 6.16 -51.93 -0.32 0.35 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.12 1.17 7.78 -51.93 -0.40 0.77 16 40 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 41 H 0.11 0.75 7.05 -51.93 -0.37 0.39 16 42 H 0.12 0.92 8.09 -51.93 -0.42 0.50 16 43 H 0.08 0.79 3.05 -51.93 -0.16 0.63 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 46 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 47 H 0.38 9.57 7.51 -40.82 -0.31 9.26 16 48 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -29.59 372.97 -7.56 -37.15 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.50 Total: 8.68 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -0.80 Total: -4.56 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.02 Total: -51.06 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.07 Total: -3.73 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.59 -7.56 -37.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037953053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.196 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds