Wall clock time and date at job start Tue Mar 31 2020 15:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47220 * 2 1 4 4 H 1.09006 * 109.52350 * 54.91648 * 3 2 1 5 5 C 1.53196 * 109.49864 * 294.83863 * 3 2 1 6 6 N 1.46924 * 108.77570 * 185.41466 * 5 3 2 7 7 C 1.34783 * 120.62713 * 233.58502 * 6 5 3 8 8 O 1.21277 * 120.00134 * 354.32903 * 7 6 5 9 9 C 1.50700 * 119.99551 * 174.32428 * 7 6 5 10 10 C 1.52996 * 112.85272 * 291.24581 * 9 7 6 11 11 C 1.53778 * 113.60880 * 159.94074 * 9 7 6 12 12 C 1.53786 * 87.08021 * 220.01730 * 11 9 7 13 13 F 1.39893 * 113.61694 * 270.88565 * 12 11 9 14 14 F 1.39906 * 113.60997 * 139.98047 * 12 11 9 15 15 C 1.53784 * 113.61203 * 62.44521 * 9 7 6 16 16 C 1.46918 * 118.74127 * 53.60676 * 6 5 3 17 17 C 1.53197 * 108.77468 * 306.39125 * 16 6 5 18 18 C 1.53035 * 109.49842 * 174.99654 * 3 2 1 19 19 H 1.09003 * 109.44634 * 61.30889 * 18 3 2 20 20 N 1.46492 * 109.46411 * 301.33914 * 18 3 2 21 21 C 1.36936 * 120.00603 * 154.92790 * 20 18 3 22 22 H 1.08000 * 119.99561 * 0.02562 * 21 20 18 23 23 C 1.38808 * 120.00754 * 180.02562 * 21 20 18 24 24 N 1.31628 * 119.99482 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00551 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47283 * 180.02562 * 25 23 21 27 27 H 1.48504 * 109.46462 * 299.99801 * 25 23 21 28 28 H 1.48501 * 109.47026 * 59.99754 * 25 23 21 29 29 H 1.09000 * 109.47306 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47139 * 300.00121 * 1 2 3 31 31 H 1.09001 * 109.46985 * 59.99841 * 1 2 3 32 32 H 1.09001 * 109.47139 * 239.99879 * 2 1 3 33 33 H 1.09002 * 109.47229 * 119.99666 * 2 1 3 34 34 H 1.08997 * 109.58472 * 65.62376 * 5 3 2 35 35 H 1.08995 * 109.58351 * 305.20133 * 5 3 2 36 36 H 1.09003 * 109.46760 * 65.56140 * 10 9 7 37 37 H 1.08995 * 109.47124 * 185.56449 * 10 9 7 38 38 H 1.09003 * 109.47388 * 305.56297 * 10 9 7 39 39 H 1.09004 * 113.61813 * 334.56375 * 11 9 7 40 40 H 1.09003 * 113.61721 * 105.47348 * 11 9 7 41 41 H 1.08999 * 113.61411 * 254.52208 * 15 9 7 42 42 H 1.08998 * 113.61540 * 25.43231 * 15 9 7 43 43 H 1.08995 * 109.58886 * 186.60622 * 16 6 5 44 44 H 1.08996 * 109.70652 * 66.24557 * 16 6 5 45 45 H 1.08998 * 109.50056 * 294.68172 * 17 16 6 46 46 H 1.09009 * 109.49294 * 174.58470 * 17 16 6 47 47 H 0.97004 * 120.00057 * 334.92959 * 20 18 3 48 48 H 0.96999 * 119.99625 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6386 2.1268 -1.3105 6 7 2.2452 3.4644 -1.3507 7 6 1.4858 4.5565 -1.5682 8 8 0.3091 4.4336 -1.8348 9 6 2.0990 5.9302 -1.4798 10 6 2.4979 6.3123 -0.0531 11 6 1.2863 7.0153 -2.2057 12 6 2.6301 7.5938 -2.6795 13 9 3.1805 8.5286 -1.7962 14 9 2.6110 8.0422 -4.0047 15 6 3.2075 6.1779 -2.5167 16 6 3.6953 3.5888 -1.1498 17 6 4.0737 2.8881 0.1589 18 6 3.5652 1.4450 0.1258 19 1 4.0007 0.9262 -0.7282 20 7 3.9542 0.7621 1.3621 21 6 5.1917 0.1851 1.4654 22 1 5.8812 0.2339 0.6356 23 6 5.5601 -0.4625 2.6366 24 7 4.7199 -0.5216 3.6481 25 14 7.2486 -1.2490 2.7778 26 1 7.3941 -1.8718 4.1179 27 1 7.3987 -2.2903 1.7296 28 1 8.2949 -0.2107 2.5976 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5534 2.2161 -1.3585 35 1 1.9965 1.5377 -2.1548 36 1 3.2999 5.6573 0.2876 37 1 2.8415 7.3465 -0.0364 38 1 1.6365 6.2050 0.6062 39 1 0.6674 6.6289 -3.0156 40 1 0.7399 7.6755 -1.5321 41 1 4.2121 6.1620 -2.0940 42 1 3.1138 5.5625 -3.4114 43 1 3.9671 4.6427 -1.0918 44 1 4.2229 3.1206 -1.9807 45 1 3.6193 3.4148 0.9981 46 1 5.1579 2.8894 0.2719 47 1 3.3351 0.7185 2.1075 48 1 4.9772 -0.9744 4.4664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037953053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:12 Heat of formation + Delta-G solvation = -124.472430 kcal Electronic energy + Delta-G solvation = -30302.689868 eV Core-core repulsion = 26028.324132 eV Total energy + Delta-G solvation = -4274.365736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.88987 -48.21554 -41.91709 -39.67191 -38.21019 -36.20294 -35.28045 -33.43242 -31.07505 -30.83799 -29.74088 -27.43268 -27.01658 -25.51001 -24.85989 -24.11890 -22.27867 -21.80287 -20.89238 -19.73011 -19.05614 -18.84243 -17.86648 -17.72974 -17.04043 -16.81421 -16.59199 -16.33158 -15.63834 -15.58001 -15.22836 -15.20186 -15.01460 -14.83126 -14.64622 -14.56297 -14.45718 -14.23758 -13.86139 -13.64285 -13.36893 -13.26348 -13.12486 -13.01338 -12.85798 -12.78688 -12.66813 -12.52009 -12.25621 -12.19382 -12.03957 -12.01837 -11.81981 -11.57195 -11.50772 -11.40101 -11.07218 -10.87653 -10.66813 -9.67055 -8.93055 -7.88686 -5.15763 1.47381 1.50543 1.51928 1.57794 1.91474 2.40765 2.60032 2.69972 3.07833 3.12227 3.26697 3.44956 3.61543 3.80951 3.83446 4.00038 4.02035 4.08673 4.24214 4.29118 4.36318 4.40836 4.43766 4.47685 4.56312 4.60518 4.65362 4.72518 4.79743 4.81798 4.82686 4.86518 4.92371 4.95890 5.02559 5.07440 5.17076 5.22338 5.31359 5.39475 5.48700 5.54211 5.60539 5.68652 6.32515 6.38433 7.06855 7.39617 8.16398 8.38941 9.34613 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.003299 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.521434 B = 8485.626001 C = 9708.710014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.092 4.092 4 H 0.052 0.948 5 C 0.125 3.875 6 N -0.599 5.599 7 C 0.535 3.465 8 O -0.575 6.575 9 C -0.098 4.098 10 C -0.139 4.139 11 C -0.137 4.137 12 C 0.256 3.744 13 F -0.179 7.179 14 F -0.196 7.196 15 C -0.147 4.147 16 C 0.105 3.895 17 C -0.143 4.143 18 C 0.178 3.822 19 H 0.047 0.953 20 N -0.731 5.731 21 C -0.230 4.230 22 H 0.078 0.922 23 C -0.074 4.074 24 N -0.971 5.971 25 Si 0.965 3.035 26 H -0.302 1.302 27 H -0.280 1.280 28 H -0.278 1.278 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.068 0.932 47 H 0.370 0.630 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 14.501 -14.179 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.330 5.330 7 C 0.323 3.677 8 O -0.455 6.455 9 C -0.102 4.102 10 C -0.196 4.196 11 C -0.175 4.175 12 C 0.220 3.780 13 F -0.160 7.160 14 F -0.177 7.177 15 C -0.185 4.185 16 C -0.017 4.017 17 C -0.184 4.184 18 C 0.070 3.930 19 H 0.065 0.935 20 N -0.369 5.369 21 C -0.362 4.362 22 H 0.096 0.904 23 C -0.266 4.266 24 N -0.622 5.622 25 Si 0.795 3.205 26 H -0.229 1.229 27 H -0.207 1.207 28 H -0.204 1.204 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.128 0.872 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.202 0.798 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.250 14.395 -14.384 21.016 hybrid contribution 0.699 -0.601 1.004 1.363 sum -4.552 13.793 -13.381 19.749 Atomic orbital electron populations 1.21778 0.94972 1.01854 1.01683 1.21360 0.95980 0.95359 1.01891 1.21625 0.95922 0.96326 0.97330 0.92911 1.21650 0.99256 0.81939 0.96889 1.48130 1.09030 1.06292 1.69550 1.20362 0.85768 0.86056 0.75482 1.90671 1.17560 1.87111 1.50121 1.21780 0.97927 0.92018 0.98444 1.21841 1.02665 1.03972 0.91082 1.24029 0.95261 0.96286 1.01924 1.21990 0.97593 0.85822 0.72580 1.92994 1.86963 1.68417 1.67618 1.93007 1.97143 1.91449 1.36126 1.24383 1.00888 0.92467 1.00764 1.22160 0.78745 1.03040 0.97778 1.22493 1.01419 0.97581 0.96906 1.20422 0.92271 0.91456 0.88868 0.93522 1.42573 1.15450 1.65008 1.13917 1.19551 0.92640 1.25704 0.98268 0.90445 1.25439 1.01368 1.03234 0.96606 1.69812 1.37087 1.50120 1.05155 0.85334 0.80638 0.78470 0.76059 1.22896 1.20651 1.20393 0.92242 0.93620 0.91722 0.91760 0.93535 0.89582 0.90077 0.90323 0.89061 0.91844 0.86518 0.87448 0.85620 0.85500 0.87230 0.89366 0.93228 0.91378 0.79815 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.68 71.98 0.70 -3.10 16 2 C -0.11 -3.34 5.31 30.60 0.16 -3.18 16 3 C -0.09 -2.80 1.92 -10.72 -0.02 -2.82 16 4 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 5 C 0.13 3.18 5.31 86.36 0.46 3.64 16 6 N -0.60 -13.84 2.97 -818.93 -2.43 -16.28 16 7 C 0.53 12.78 6.67 87.66 0.58 13.36 16 8 O -0.57 -17.62 15.67 -3.02 -0.05 -17.66 16 9 C -0.10 -1.72 0.70 -52.40 -0.04 -1.76 16 10 C -0.14 -2.30 8.74 71.98 0.63 -1.67 16 11 C -0.14 -2.28 6.68 31.12 0.21 -2.07 16 12 C 0.26 4.16 3.27 31.12 0.10 4.26 16 13 F -0.18 -3.18 15.49 44.97 0.70 -2.48 16 14 F -0.20 -3.76 17.41 44.97 0.78 -2.98 16 15 C -0.15 -1.97 5.41 31.12 0.17 -1.80 16 16 C 0.11 2.11 5.28 86.37 0.46 2.57 16 17 C -0.14 -4.14 5.62 30.67 0.17 -3.97 16 18 C 0.18 6.18 2.19 45.02 0.10 6.28 16 19 H 0.05 1.64 8.08 -2.39 -0.02 1.62 16 20 N -0.73 -33.90 4.33 -322.84 -1.40 -35.30 16 21 C -0.23 -11.88 9.93 84.03 0.83 -11.04 16 22 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 23 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 24 N -0.97 -57.80 13.06 21.65 0.28 -57.52 16 25 Si 0.96 44.55 29.55 68.60 2.03 46.58 16 26 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.49 6.70 -2.39 -0.02 1.48 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.80 7.22 -2.39 -0.02 1.79 16 34 H 0.09 2.32 5.76 -2.39 -0.01 2.31 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.31 6.13 -2.39 -0.01 1.30 16 37 H 0.09 1.32 6.16 -2.39 -0.01 1.30 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 2.08 7.78 -2.39 -0.02 2.06 16 40 H 0.11 1.62 8.10 -2.39 -0.02 1.60 16 41 H 0.13 1.23 7.05 -2.39 -0.02 1.21 16 42 H 0.13 1.52 8.09 -2.39 -0.02 1.50 16 43 H 0.11 1.67 3.05 -2.39 -0.01 1.67 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 45 H 0.05 1.55 8.04 -2.39 -0.02 1.53 16 46 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 47 H 0.37 19.12 7.51 -92.71 -0.70 18.42 16 48 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -64.61 372.97 5.17 -59.44 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.28 Total: 31.11 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 4.98 Total: -4.91 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -3.55 Total: -109.10 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.66 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 1.48 Total: -5.46 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.61 5.17 -59.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037953053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.031 kcal (2) G-P(sol) polarization free energy of solvation -64.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds