Wall clock time and date at job start Tue Mar 31 2020 17:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.69711 * 2 1 4 4 C 1.53195 * 109.58714 * 239.64741 * 2 1 3 5 5 C 1.53039 * 109.31197 * 185.57525 * 4 2 1 6 6 H 1.08998 * 109.45254 * 301.35306 * 5 4 2 7 7 N 1.46494 * 109.45982 * 181.38549 * 5 4 2 8 8 C 1.36943 * 120.00193 * 154.93663 * 7 5 4 9 9 H 1.08005 * 119.99593 * 359.97438 * 8 7 5 10 10 C 1.38805 * 120.00214 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99963 * 359.71853 * 10 8 7 12 12 Si 1.86800 * 120.00200 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47471 * 179.72332 * 12 10 8 14 14 H 1.48501 * 109.46631 * 299.72186 * 12 10 8 15 15 H 1.48498 * 109.47133 * 59.71466 * 12 10 8 16 16 C 1.53046 * 109.53731 * 61.36744 * 5 4 2 17 17 C 1.53195 * 109.31044 * 298.63208 * 16 5 4 18 18 N 1.46917 * 109.58682 * 120.35880 * 2 1 3 19 19 C 1.34780 * 120.62993 * 353.41662 * 18 2 1 20 20 O 1.21273 * 120.00149 * 355.98716 * 19 18 2 21 21 C 1.50702 * 119.99730 * 175.98428 * 19 18 2 22 22 C 1.52998 * 109.47475 * 295.76176 * 21 19 18 23 23 C 1.52994 * 109.47120 * 180.02562 * 22 21 19 24 24 C 1.52999 * 109.47377 * 60.00124 * 23 22 21 25 25 F 1.39896 * 109.46950 * 179.97438 * 24 23 22 26 26 F 1.39901 * 109.46964 * 60.00029 * 24 23 22 27 27 C 1.52993 * 109.47084 * 299.99754 * 24 23 22 28 28 C 1.53003 * 109.47077 * 60.00212 * 27 24 23 29 29 H 1.08997 * 109.47788 * 306.82803 * 1 2 3 30 30 H 1.09009 * 109.47164 * 66.83027 * 1 2 3 31 31 H 1.09005 * 109.47366 * 186.82648 * 1 2 3 32 32 H 1.09001 * 109.49657 * 65.62780 * 4 2 1 33 33 H 1.08999 * 109.49917 * 305.52980 * 4 2 1 34 34 H 0.97002 * 120.00535 * 334.93548 * 7 5 4 35 35 H 0.96997 * 120.00470 * 0.27329 * 11 10 8 36 36 H 1.08996 * 109.49914 * 58.58225 * 16 5 4 37 37 H 1.08999 * 109.49864 * 178.68354 * 16 5 4 38 38 H 1.08993 * 109.58616 * 174.41672 * 17 16 5 39 39 H 1.08999 * 109.58884 * 294.70438 * 17 16 5 40 40 H 1.08999 * 109.47378 * 55.76462 * 21 19 18 41 41 H 1.08999 * 109.47051 * 300.00486 * 22 21 19 42 42 H 1.08995 * 109.46918 * 60.00149 * 22 21 19 43 43 H 1.09005 * 109.47182 * 299.99546 * 23 22 21 44 44 H 1.09005 * 109.46641 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47502 * 300.00288 * 27 24 23 46 46 H 1.09005 * 109.47165 * 179.97438 * 27 24 23 47 47 H 1.09001 * 109.46992 * 180.02562 * 28 27 24 48 48 H 1.08999 * 109.47408 * 59.99795 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8479 -1.1702 6 1 4.0059 0.1475 -1.0992 7 7 4.0652 -1.5155 -2.3754 8 6 5.3493 -1.2975 -2.7983 9 1 5.9950 -0.6329 -2.2434 10 6 5.8207 -1.9297 -3.9405 11 7 5.0353 -2.7431 -4.6142 12 14 7.5721 -1.6316 -4.5177 13 1 7.8296 -2.4231 -5.7475 14 1 7.7577 -0.1877 -4.8105 15 1 8.5213 -2.0469 -3.4539 16 6 3.9569 -1.6657 0.0634 17 6 3.4650 -0.9469 1.3237 18 7 2.0225 -0.6996 1.1944 19 6 1.1672 -1.1070 2.1531 20 8 -0.0114 -0.8337 2.0703 21 6 1.6757 -1.9023 3.3278 22 6 2.2196 -3.2456 2.8374 23 6 2.7351 -4.0532 4.0301 24 6 1.5898 -4.2958 5.0152 25 9 2.0612 -5.0348 6.1055 26 9 0.5685 -5.0075 4.3766 27 6 1.0459 -2.9526 5.5057 28 6 0.5303 -2.1450 4.3129 29 1 -0.3634 0.6160 0.8225 30 1 -0.3634 0.4044 -0.9449 31 1 -0.3634 -1.0204 0.1222 32 1 1.7660 -0.1667 -2.1368 33 1 1.6030 -1.7252 -1.2915 34 1 3.4852 -2.1122 -2.8740 35 1 4.1257 -2.8977 -4.3147 36 1 3.4983 -2.6528 0.0052 37 1 5.0412 -1.7695 0.1036 38 1 3.6517 -1.5718 2.1970 39 1 3.9921 0.0008 1.4331 40 1 2.4715 -1.3478 3.8250 41 1 1.4237 -3.8002 2.3402 42 1 3.0353 -3.0728 2.1354 43 1 3.5310 -3.4988 4.5276 44 1 3.1231 -5.0101 3.6806 45 1 1.8417 -2.3982 6.0031 46 1 0.2296 -3.1255 6.2071 47 1 0.1432 -1.1878 4.6623 48 1 -0.2655 -2.6993 3.8154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044752035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:07 Heat of formation + Delta-G solvation = -127.972320 kcal Electronic energy + Delta-G solvation = -30293.539846 eV Core-core repulsion = 26019.022343 eV Total energy + Delta-G solvation = -4274.517503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.20558 -47.18913 -40.87900 -38.08773 -37.10987 -34.81311 -33.04910 -32.12377 -31.44529 -30.27269 -29.04115 -27.04804 -24.42979 -23.69859 -23.58506 -23.02636 -21.74509 -20.54375 -20.25882 -18.84206 -17.66777 -17.33575 -17.20547 -16.87099 -16.52787 -16.04662 -15.44218 -14.90074 -14.66801 -14.49594 -14.31804 -14.02459 -13.70819 -13.63097 -13.57359 -13.53139 -13.31457 -13.11206 -12.89144 -12.71521 -12.44739 -12.18111 -12.06952 -12.00244 -11.79186 -11.65423 -11.56311 -11.43914 -11.04250 -10.88725 -10.87077 -10.61959 -10.51456 -10.42187 -10.12443 -10.02275 -9.25789 -8.99466 -8.96796 -8.49763 -7.10736 -6.15144 -3.16071 2.56619 2.94869 3.46337 3.47550 3.50688 3.68562 3.74761 3.94533 4.03749 4.45327 4.49991 4.55263 4.61093 4.70712 4.85155 4.89146 4.98719 5.04984 5.12242 5.21040 5.24631 5.31721 5.37946 5.41130 5.43513 5.45624 5.56303 5.59507 5.64089 5.70119 5.77820 5.86446 5.91546 5.96031 6.03309 6.09667 6.23900 6.32699 6.34883 6.41319 6.63775 6.77670 6.91319 7.46046 7.74285 8.18815 8.70215 9.16600 10.03124 10.18028 11.32957 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.003139 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.356309 B = 8916.745524 C =10113.203872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.147 3.853 3 H 0.070 0.930 4 C -0.136 4.136 5 C 0.185 3.815 6 H 0.048 0.952 7 N -0.735 5.735 8 C -0.333 4.333 9 H 0.064 0.936 10 C -0.044 4.044 11 N -0.942 5.942 12 Si 1.079 2.921 13 H -0.285 1.285 14 H -0.295 1.295 15 H -0.295 1.295 16 C -0.151 4.151 17 C 0.099 3.901 18 N -0.601 5.601 19 C 0.520 3.480 20 O -0.537 6.537 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.156 4.156 24 C 0.286 3.714 25 F -0.204 7.204 26 F -0.198 7.198 27 C -0.157 4.157 28 C -0.097 4.097 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.367 0.633 35 H 0.255 0.745 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 2.084 21.018 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.044 3.956 3 H 0.088 0.912 4 C -0.175 4.175 5 C 0.075 3.925 6 H 0.066 0.934 7 N -0.377 5.377 8 C -0.464 4.464 9 H 0.082 0.918 10 C -0.241 4.241 11 N -0.588 5.588 12 Si 0.910 3.090 13 H -0.210 1.210 14 H -0.223 1.223 15 H -0.223 1.223 16 C -0.193 4.193 17 C -0.024 4.024 18 N -0.334 5.334 19 C 0.308 3.692 20 O -0.415 6.415 21 C -0.134 4.134 22 C -0.159 4.159 23 C -0.194 4.194 24 C 0.250 3.750 25 F -0.185 7.185 26 F -0.179 7.179 27 C -0.195 4.195 28 C -0.135 4.135 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.200 0.800 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.046 1.957 19.875 20.867 hybrid contribution -1.074 -0.034 1.118 1.551 sum -7.119 1.923 20.994 22.251 Atomic orbital electron populations 1.22170 0.92817 1.03586 1.00538 1.21290 0.95414 0.95092 0.83795 0.91196 1.22314 0.97547 1.00883 0.96748 1.20083 0.90755 0.94957 0.86751 0.93368 1.42441 1.13079 1.54743 1.27416 1.20016 0.89648 1.26450 1.10284 0.91776 1.25761 1.06245 0.97519 0.94623 1.70882 1.08240 1.38046 1.41585 0.83258 0.74135 0.75495 0.76156 1.21035 1.22264 1.22268 1.22681 1.01807 0.99903 0.94867 1.22049 0.79705 1.00816 0.99879 1.48210 1.07558 1.57363 1.20248 1.20379 0.86076 0.79410 0.83347 1.90737 1.16739 1.56869 1.77107 1.21450 0.99782 0.96748 0.95421 1.21759 1.02769 0.94031 0.97385 1.22515 0.96897 1.03509 0.96444 1.21156 0.85566 0.86502 0.81756 1.93005 1.89057 1.79735 1.56717 1.93009 1.61750 1.80750 1.82377 1.22546 1.03331 0.93613 1.00017 1.21311 0.97381 1.01156 0.93687 0.90976 0.93864 0.91610 0.90748 0.91941 0.80019 0.93348 0.92224 0.90548 0.89723 0.91399 0.88354 0.90142 0.88554 0.88494 0.88895 0.88710 0.89182 0.89789 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 7.61 37.16 0.28 -1.57 16 2 C 0.15 2.03 3.49 -67.60 -0.24 1.79 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -2.17 4.84 -26.61 -0.13 -2.30 16 5 C 0.18 3.40 2.73 -67.89 -0.19 3.21 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.51 16 7 N -0.74 -17.53 5.12 -53.39 -0.27 -17.81 16 8 C -0.33 -8.97 9.93 -15.06 -0.15 -9.12 16 9 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 10 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 11 N -0.94 -28.61 13.70 55.49 0.76 -27.85 16 12 Si 1.08 25.22 29.92 -169.99 -5.09 20.14 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.30 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 16 C -0.15 -2.34 5.42 -26.61 -0.14 -2.48 16 17 C 0.10 1.13 5.52 -3.71 -0.02 1.11 16 18 N -0.60 -7.57 2.97 -165.22 -0.49 -8.06 16 19 C 0.52 6.48 6.86 -10.98 -0.08 6.40 16 20 O -0.54 -8.03 11.50 5.56 0.06 -7.97 16 21 C -0.11 -1.03 1.68 -91.77 -0.15 -1.18 16 22 C -0.12 -1.12 4.65 -26.74 -0.12 -1.24 16 23 C -0.16 -1.23 5.45 -26.73 -0.15 -1.38 16 24 C 0.29 2.64 2.10 -26.74 -0.06 2.58 16 25 F -0.20 -2.13 17.06 2.25 0.04 -2.09 16 26 F -0.20 -2.29 16.02 2.25 0.04 -2.26 16 27 C -0.16 -1.15 5.45 -26.73 -0.15 -1.30 16 28 C -0.10 -0.86 4.38 -26.73 -0.12 -0.97 16 29 H 0.07 1.03 6.69 -51.93 -0.35 0.69 16 30 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.06 1.01 6.80 -51.93 -0.35 0.66 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.37 9.20 6.63 -40.82 -0.27 8.93 16 35 H 0.26 7.64 6.77 -40.82 -0.28 7.37 16 36 H 0.06 0.97 7.69 -51.93 -0.40 0.57 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 0.76 4.29 -51.93 -0.22 0.54 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.70 7.55 -51.93 -0.39 0.31 16 41 H 0.08 0.87 7.80 -51.93 -0.41 0.47 16 42 H 0.10 0.90 4.75 -51.93 -0.25 0.66 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.88 7.71 -51.93 -0.40 0.48 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -31.66 365.38 -8.53 -40.19 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.59 Total: 7.96 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.50 Total: -7.77 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.00 Total: -53.71 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.06 Total: -7.97 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.07 Total: -4.35 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.09 Total: 20.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.66 -8.53 -40.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044752035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.779 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds