Wall clock time and date at job start Tue Mar 31 2020 17:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.69711 * 2 1 4 4 C 1.53195 * 109.58714 * 239.64741 * 2 1 3 5 5 C 1.53039 * 109.31197 * 185.57525 * 4 2 1 6 6 H 1.08998 * 109.45254 * 301.35306 * 5 4 2 7 7 N 1.46494 * 109.45982 * 181.38549 * 5 4 2 8 8 C 1.36943 * 120.00193 * 154.93663 * 7 5 4 9 9 H 1.08005 * 119.99593 * 359.97438 * 8 7 5 10 10 C 1.38805 * 120.00214 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99963 * 359.71853 * 10 8 7 12 12 Si 1.86800 * 120.00200 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47471 * 179.72332 * 12 10 8 14 14 H 1.48501 * 109.46631 * 299.72186 * 12 10 8 15 15 H 1.48498 * 109.47133 * 59.71466 * 12 10 8 16 16 C 1.53046 * 109.53731 * 61.36744 * 5 4 2 17 17 C 1.53195 * 109.31044 * 298.63208 * 16 5 4 18 18 N 1.46917 * 109.58682 * 120.35880 * 2 1 3 19 19 C 1.34780 * 120.62993 * 353.41662 * 18 2 1 20 20 O 1.21273 * 120.00149 * 355.98716 * 19 18 2 21 21 C 1.50702 * 119.99730 * 175.98428 * 19 18 2 22 22 C 1.52998 * 109.47475 * 295.76176 * 21 19 18 23 23 C 1.52994 * 109.47120 * 180.02562 * 22 21 19 24 24 C 1.52999 * 109.47377 * 60.00124 * 23 22 21 25 25 F 1.39896 * 109.46950 * 179.97438 * 24 23 22 26 26 F 1.39901 * 109.46964 * 60.00029 * 24 23 22 27 27 C 1.52993 * 109.47084 * 299.99754 * 24 23 22 28 28 C 1.53003 * 109.47077 * 60.00212 * 27 24 23 29 29 H 1.08997 * 109.47788 * 306.82803 * 1 2 3 30 30 H 1.09009 * 109.47164 * 66.83027 * 1 2 3 31 31 H 1.09005 * 109.47366 * 186.82648 * 1 2 3 32 32 H 1.09001 * 109.49657 * 65.62780 * 4 2 1 33 33 H 1.08999 * 109.49917 * 305.52980 * 4 2 1 34 34 H 0.97002 * 120.00535 * 334.93548 * 7 5 4 35 35 H 0.96997 * 120.00470 * 0.27329 * 11 10 8 36 36 H 1.08996 * 109.49914 * 58.58225 * 16 5 4 37 37 H 1.08999 * 109.49864 * 178.68354 * 16 5 4 38 38 H 1.08993 * 109.58616 * 174.41672 * 17 16 5 39 39 H 1.08999 * 109.58884 * 294.70438 * 17 16 5 40 40 H 1.08999 * 109.47378 * 55.76462 * 21 19 18 41 41 H 1.08999 * 109.47051 * 300.00486 * 22 21 19 42 42 H 1.08995 * 109.46918 * 60.00149 * 22 21 19 43 43 H 1.09005 * 109.47182 * 299.99546 * 23 22 21 44 44 H 1.09005 * 109.46641 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47502 * 300.00288 * 27 24 23 46 46 H 1.09005 * 109.47165 * 179.97438 * 27 24 23 47 47 H 1.09001 * 109.46992 * 180.02562 * 28 27 24 48 48 H 1.08999 * 109.47408 * 59.99795 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8479 -1.1702 6 1 4.0059 0.1475 -1.0992 7 7 4.0652 -1.5155 -2.3754 8 6 5.3493 -1.2975 -2.7983 9 1 5.9950 -0.6329 -2.2434 10 6 5.8207 -1.9297 -3.9405 11 7 5.0353 -2.7431 -4.6142 12 14 7.5721 -1.6316 -4.5177 13 1 7.8296 -2.4231 -5.7475 14 1 7.7577 -0.1877 -4.8105 15 1 8.5213 -2.0469 -3.4539 16 6 3.9569 -1.6657 0.0634 17 6 3.4650 -0.9469 1.3237 18 7 2.0225 -0.6996 1.1944 19 6 1.1672 -1.1070 2.1531 20 8 -0.0114 -0.8337 2.0703 21 6 1.6757 -1.9023 3.3278 22 6 2.2196 -3.2456 2.8374 23 6 2.7351 -4.0532 4.0301 24 6 1.5898 -4.2958 5.0152 25 9 2.0612 -5.0348 6.1055 26 9 0.5685 -5.0075 4.3766 27 6 1.0459 -2.9526 5.5057 28 6 0.5303 -2.1450 4.3129 29 1 -0.3634 0.6160 0.8225 30 1 -0.3634 0.4044 -0.9449 31 1 -0.3634 -1.0204 0.1222 32 1 1.7660 -0.1667 -2.1368 33 1 1.6030 -1.7252 -1.2915 34 1 3.4852 -2.1122 -2.8740 35 1 4.1257 -2.8977 -4.3147 36 1 3.4983 -2.6528 0.0052 37 1 5.0412 -1.7695 0.1036 38 1 3.6517 -1.5718 2.1970 39 1 3.9921 0.0008 1.4331 40 1 2.4715 -1.3478 3.8250 41 1 1.4237 -3.8002 2.3402 42 1 3.0353 -3.0728 2.1354 43 1 3.5310 -3.4988 4.5276 44 1 3.1231 -5.0101 3.6806 45 1 1.8417 -2.3982 6.0031 46 1 0.2296 -3.1255 6.2071 47 1 0.1432 -1.1878 4.6623 48 1 -0.2655 -2.6993 3.8154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044752035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:07 Heat of formation + Delta-G solvation = -146.179587 kcal Electronic energy + Delta-G solvation = -30294.329372 eV Core-core repulsion = 26019.022343 eV Total energy + Delta-G solvation = -4275.307029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.96871 -47.97289 -41.89263 -39.17497 -38.09469 -36.45507 -34.18257 -33.75172 -32.11719 -31.21075 -30.56040 -28.35823 -25.90528 -24.94108 -24.49722 -24.14323 -22.80320 -21.73552 -21.20027 -19.91015 -19.28966 -18.40156 -18.06396 -17.75090 -17.24416 -17.11837 -16.81048 -16.26128 -15.95403 -15.53117 -15.42828 -15.26679 -15.04547 -14.87211 -14.59087 -14.45094 -14.31536 -13.97992 -13.87812 -13.53294 -13.40067 -13.22766 -13.19077 -13.08239 -12.76405 -12.75947 -12.60788 -12.50023 -12.39528 -12.21366 -12.07306 -11.92126 -11.85974 -11.74505 -11.60618 -11.17241 -11.11315 -10.87178 -10.06065 -9.59802 -9.10917 -8.35962 -5.30619 1.59234 1.60223 1.69713 1.85585 1.96041 2.73267 2.80022 3.10692 3.19007 3.39761 3.42600 3.58783 3.64507 3.74597 3.82488 3.88100 3.96215 4.03399 4.05615 4.17786 4.26162 4.27302 4.31759 4.51209 4.54653 4.56026 4.61412 4.62246 4.68969 4.77250 4.80460 4.86110 4.89835 4.95380 4.95836 5.01862 5.10261 5.15211 5.20996 5.28257 5.35788 5.46881 5.62762 5.66749 6.46268 6.51120 7.11066 7.19575 8.00938 8.14190 9.15705 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.003139 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.356309 B = 8916.745524 C =10113.203872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.152 3.848 3 H 0.083 0.917 4 C -0.124 4.124 5 C 0.178 3.822 6 H 0.045 0.955 7 N -0.751 5.751 8 C -0.324 4.324 9 H 0.071 0.929 10 C -0.107 4.107 11 N -0.979 5.979 12 Si 1.126 2.874 13 H -0.298 1.298 14 H -0.278 1.278 15 H -0.275 1.275 16 C -0.140 4.140 17 C 0.107 3.893 18 N -0.603 5.603 19 C 0.515 3.485 20 O -0.565 6.565 21 C -0.106 4.106 22 C -0.117 4.117 23 C -0.151 4.151 24 C 0.275 3.725 25 F -0.211 7.211 26 F -0.218 7.218 27 C -0.149 4.149 28 C -0.093 4.093 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.356 0.644 35 H 0.242 0.758 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.128 0.872 44 H 0.089 0.911 45 H 0.125 0.875 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 3.493 23.699 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.048 3.952 3 H 0.101 0.899 4 C -0.163 4.163 5 C 0.070 3.930 6 H 0.063 0.937 7 N -0.392 5.392 8 C -0.455 4.455 9 H 0.089 0.911 10 C -0.298 4.298 11 N -0.628 5.628 12 Si 0.951 3.049 13 H -0.225 1.225 14 H -0.204 1.204 15 H -0.201 1.201 16 C -0.181 4.181 17 C -0.015 4.015 18 N -0.335 5.335 19 C 0.305 3.695 20 O -0.444 6.444 21 C -0.127 4.127 22 C -0.155 4.155 23 C -0.189 4.189 24 C 0.240 3.760 25 F -0.192 7.192 26 F -0.199 7.199 27 C -0.186 4.186 28 C -0.131 4.131 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.187 0.813 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.153 0.847 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.146 0.854 44 H 0.108 0.892 45 H 0.143 0.857 46 H 0.112 0.888 47 H 0.107 0.893 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.523 3.393 22.628 23.324 hybrid contribution -1.647 -0.459 0.315 1.739 sum -6.171 2.934 22.943 23.939 Atomic orbital electron populations 1.22020 0.92821 1.02302 1.00786 1.21183 0.95274 0.95447 0.83290 0.89885 1.22160 0.95902 1.00337 0.97907 1.20354 0.91967 0.94659 0.86044 0.93655 1.42695 1.12234 1.55044 1.29213 1.20371 0.90700 1.24902 1.09543 0.91103 1.27140 1.09401 0.97713 0.95540 1.70995 1.08157 1.40595 1.43048 0.82650 0.70570 0.76043 0.75652 1.22455 1.20448 1.20076 1.22442 1.01102 0.99212 0.95364 1.22090 0.78836 1.01848 0.98754 1.48259 1.08149 1.57267 1.19872 1.20986 0.85638 0.78965 0.83911 1.90731 1.18018 1.57802 1.77866 1.21496 1.00789 0.96304 0.94072 1.21677 1.01908 0.94016 0.97874 1.22531 0.97026 1.03637 0.95660 1.21575 0.85690 0.86918 0.81865 1.92989 1.89110 1.80062 1.57060 1.92974 1.62777 1.81374 1.82816 1.22539 1.04427 0.92360 0.99321 1.21237 0.96618 1.01225 0.93999 0.91154 0.93200 0.93552 0.91691 0.93327 0.81298 0.94730 0.93387 0.91537 0.86298 0.89580 0.84745 0.92691 0.88518 0.85361 0.89194 0.85699 0.88790 0.89258 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 7.61 71.98 0.55 -2.77 16 2 C 0.15 4.00 3.49 44.98 0.16 4.16 16 3 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.12 -3.98 4.84 30.67 0.15 -3.83 16 5 C 0.18 6.46 2.73 45.02 0.12 6.59 16 6 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 7 N -0.75 -36.32 5.12 -322.82 -1.65 -37.98 16 8 C -0.32 -17.41 9.93 84.03 0.83 -16.58 16 9 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 10 C -0.11 -6.08 5.50 84.86 0.47 -5.61 16 11 N -0.98 -60.93 13.70 21.65 0.30 -60.63 16 12 Si 1.13 50.59 29.92 68.60 2.05 52.65 16 13 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 14 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 16 C -0.14 -4.14 5.42 30.67 0.17 -3.97 16 17 C 0.11 2.11 5.52 86.36 0.48 2.59 16 18 N -0.60 -13.90 2.97 -795.04 -2.36 -16.26 16 19 C 0.52 11.85 6.86 87.66 0.60 12.45 16 20 O -0.56 -16.45 11.50 -3.01 -0.03 -16.48 16 21 C -0.11 -1.61 1.68 -11.54 -0.02 -1.63 16 22 C -0.12 -1.90 4.65 30.59 0.14 -1.75 16 23 C -0.15 -1.96 5.45 30.59 0.17 -1.79 16 24 C 0.28 4.52 2.10 30.59 0.06 4.58 16 25 F -0.21 -3.97 17.06 44.97 0.77 -3.20 16 26 F -0.22 -5.00 16.02 44.97 0.72 -4.28 16 27 C -0.15 -1.74 5.45 30.59 0.17 -1.57 16 28 C -0.09 -1.44 4.38 30.60 0.13 -1.30 16 29 H 0.07 1.96 6.69 -2.39 -0.02 1.94 16 30 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 1.43 6.80 -2.38 -0.02 1.42 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.36 18.52 6.63 -92.71 -0.61 17.91 16 35 H 0.24 15.10 6.77 -92.71 -0.63 14.47 16 36 H 0.05 1.52 7.69 -2.39 -0.02 1.51 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.12 1.58 4.29 -2.39 -0.01 1.57 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.13 1.16 7.55 -2.39 -0.02 1.14 16 41 H 0.05 1.18 7.80 -2.39 -0.02 1.16 16 42 H 0.10 1.56 4.75 -2.39 -0.01 1.55 16 43 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 47 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.05 1.17 7.71 -2.39 -0.02 1.15 16 Total: -1.00 -70.92 365.38 4.46 -66.46 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.49 Total: 30.17 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 4.18 Total: -10.45 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -3.72 Total: -114.87 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.03 Total: -16.48 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 1.49 Total: -7.48 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.65 kcal Total: -70.92 4.46 -66.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044752035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.722 kcal (2) G-P(sol) polarization free energy of solvation -70.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds