Wall clock time and date at job start Tue Mar 31 2020 17:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.58154 * 2 1 4 4 C 1.53189 * 109.58883 * 120.43201 * 2 1 3 5 5 C 1.53034 * 109.31353 * 174.42219 * 4 2 1 6 6 H 1.09003 * 109.46294 * 178.62915 * 5 4 2 7 7 N 1.46502 * 109.46214 * 58.65590 * 5 4 2 8 8 C 1.36933 * 120.00142 * 154.99817 * 7 5 4 9 9 H 1.07992 * 120.00116 * 0.02562 * 8 7 5 10 10 C 1.38815 * 120.00054 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99734 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00155 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46977 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47019 * 120.00112 * 12 10 8 15 15 H 1.48495 * 109.47048 * 239.99965 * 12 10 8 16 16 C 1.53048 * 109.54034 * 298.63538 * 5 4 2 17 17 C 1.53195 * 109.30793 * 61.36484 * 16 5 4 18 18 N 1.46924 * 108.77796 * 305.36429 * 17 16 5 19 19 C 1.34778 * 120.63387 * 233.88979 * 18 17 16 20 20 O 1.21281 * 120.00456 * 176.44000 * 19 18 17 21 21 C 1.50700 * 119.99672 * 356.43300 * 19 18 17 22 22 C 1.52995 * 109.47338 * 292.19821 * 21 19 18 23 23 C 1.53004 * 109.47305 * 180.02562 * 22 21 19 24 24 C 1.52999 * 109.47188 * 59.99903 * 23 22 21 25 25 F 1.39903 * 109.46947 * 180.02562 * 24 23 22 26 26 F 1.39896 * 109.46868 * 60.00252 * 24 23 22 27 27 C 1.53003 * 109.46986 * 300.00022 * 24 23 22 28 28 C 1.52999 * 109.46990 * 172.19825 * 21 19 18 29 29 H 1.09000 * 109.46713 * 176.33225 * 1 2 3 30 30 H 1.08996 * 109.47085 * 296.33261 * 1 2 3 31 31 H 1.09007 * 109.47115 * 56.33231 * 1 2 3 32 32 H 1.08992 * 109.49689 * 294.37705 * 4 2 1 33 33 H 1.08999 * 109.49339 * 54.47369 * 4 2 1 34 34 H 0.97004 * 119.99326 * 335.00104 * 7 5 4 35 35 H 0.97005 * 119.99907 * 180.02562 * 11 10 8 36 36 H 1.08997 * 109.49579 * 181.31530 * 16 5 4 37 37 H 1.09000 * 109.49698 * 301.41653 * 16 5 4 38 38 H 1.09002 * 109.58578 * 185.58154 * 17 16 5 39 39 H 1.08996 * 109.58889 * 65.15592 * 17 16 5 40 40 H 1.09002 * 109.47185 * 52.19820 * 21 19 18 41 41 H 1.08999 * 109.47249 * 299.99671 * 22 21 19 42 42 H 1.09006 * 109.47629 * 60.00001 * 22 21 19 43 43 H 1.09002 * 109.47020 * 299.99878 * 23 22 21 44 44 H 1.08996 * 109.47435 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.47203 * 300.00013 * 27 24 23 46 46 H 1.08996 * 109.47019 * 179.97438 * 27 24 23 47 47 H 1.09004 * 109.47076 * 300.00092 * 28 21 19 48 48 H 1.08999 * 109.47396 * 60.00452 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1689 6 1 3.9379 -1.3478 2.0649 7 7 4.1571 0.4884 1.0755 8 6 5.4414 0.7018 1.4998 9 1 6.0199 -0.1162 1.9029 10 6 5.9999 1.9696 1.4118 11 7 5.2946 2.9667 0.9210 12 14 7.7521 2.2606 1.9900 13 1 8.3241 0.9873 2.4964 14 1 8.5721 2.7555 0.8550 15 1 7.7529 3.2706 3.0785 16 6 3.9570 -1.6656 -0.0658 17 6 3.4651 -0.9450 -1.3251 18 7 2.0226 -0.6979 -1.1955 19 6 1.1668 -1.1085 -2.1523 20 8 -0.0273 -0.9563 -2.0039 21 6 1.6936 -1.7567 -3.4066 22 6 2.4613 -0.7220 -4.2317 23 6 2.9956 -1.3800 -5.5055 24 6 1.8256 -1.9225 -6.3287 25 9 2.3142 -2.5246 -7.4931 26 9 0.9692 -0.8706 -6.6712 27 6 1.0579 -2.9573 -5.5036 28 6 0.5239 -2.2996 -4.2300 29 1 -0.3633 -1.0256 -0.0657 30 1 -0.3633 0.4558 0.9210 31 1 -0.3634 0.5697 -0.8553 32 1 1.7661 -0.1697 2.1365 33 1 1.6031 -1.7270 1.2889 34 1 3.6376 1.2231 0.7131 35 1 5.6850 3.8526 0.8591 36 1 5.0413 -1.7693 -0.1061 37 1 3.4984 -2.6528 -0.0089 38 1 3.6518 -1.5687 -2.1994 39 1 3.9903 0.0040 -1.4318 40 1 2.3610 -2.5761 -3.1394 41 1 1.7938 0.0972 -4.4990 42 1 3.2946 -0.3352 -3.6451 43 1 3.6629 -2.1995 -5.2387 44 1 3.5429 -0.6430 -6.0931 45 1 1.7252 -3.7768 -5.2367 46 1 0.2241 -3.3434 -6.0898 47 1 -0.0230 -3.0368 -3.6422 48 1 -0.1435 -1.4804 -4.4973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044752036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:11 Heat of formation + Delta-G solvation = -128.401257 kcal Electronic energy + Delta-G solvation = -30574.183011 eV Core-core repulsion = 26299.646908 eV Total energy + Delta-G solvation = -4274.536103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.13199 -47.11844 -40.65874 -38.07946 -36.91730 -34.25575 -32.79880 -31.96069 -31.34102 -30.13483 -29.04325 -27.00933 -24.43500 -23.72124 -23.52977 -23.23137 -21.74819 -20.53802 -19.62223 -18.38522 -17.55312 -17.25238 -17.03177 -16.62494 -16.43187 -15.84449 -15.24129 -14.70199 -14.51019 -14.27620 -14.00835 -13.92728 -13.81513 -13.71416 -13.42403 -13.32001 -13.11580 -13.01151 -12.71200 -12.46811 -12.42753 -12.09304 -11.99625 -11.87541 -11.64064 -11.46244 -11.41666 -11.21695 -10.96087 -10.90168 -10.83799 -10.66145 -10.46222 -10.31109 -10.24434 -9.96427 -9.68209 -8.99802 -8.76072 -8.16264 -7.03668 -5.83834 -3.12919 2.78538 3.18962 3.37805 3.44120 3.46200 3.54656 3.84039 4.07531 4.12926 4.53097 4.58447 4.66412 4.70026 4.82117 4.98192 5.01742 5.19272 5.26704 5.33521 5.35089 5.43575 5.47600 5.50821 5.53089 5.55829 5.66058 5.69725 5.74176 5.77122 5.87416 5.94612 5.99617 6.07957 6.10490 6.16124 6.29461 6.38840 6.46838 6.57311 6.70135 6.74381 6.80942 7.04056 7.64402 7.73698 8.34535 8.41559 9.46233 10.02693 10.37614 11.38539 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014705 B = 0.003439 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.636957 B = 8139.168353 C = 9241.187330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.145 3.855 3 H 0.079 0.921 4 C -0.133 4.133 5 C 0.173 3.827 6 H 0.050 0.950 7 N -0.722 5.722 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.931 5.931 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.150 4.150 17 C 0.111 3.889 18 N -0.595 5.595 19 C 0.518 3.482 20 O -0.542 6.542 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.155 4.155 24 C 0.286 3.714 25 F -0.205 7.205 26 F -0.198 7.198 27 C -0.157 4.157 28 C -0.097 4.097 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.403 -12.480 -11.224 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.042 3.958 3 H 0.097 0.903 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.068 0.932 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.580 5.580 12 Si 0.735 3.265 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.191 4.191 17 C -0.011 4.011 18 N -0.327 5.327 19 C 0.305 3.695 20 O -0.421 6.421 21 C -0.134 4.134 22 C -0.154 4.154 23 C -0.193 4.193 24 C 0.250 3.750 25 F -0.186 7.186 26 F -0.179 7.179 27 C -0.195 4.195 28 C -0.135 4.135 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.857 -12.371 -11.087 18.377 hybrid contribution 1.100 0.500 0.019 1.209 sum -6.757 -11.871 -11.068 17.580 Atomic orbital electron populations 1.22195 0.93202 1.03062 1.00459 1.21270 0.94827 0.95974 0.83724 0.90267 1.22234 0.97314 1.00195 0.97447 1.20190 0.90475 0.88118 0.94921 0.93184 1.42518 1.13773 1.04659 1.75493 1.19272 0.89744 0.94135 1.33933 0.91162 1.24718 0.98238 0.95880 1.01893 1.69663 1.36385 1.00546 1.51373 0.86166 0.84699 0.77658 0.77934 1.20607 1.21928 1.21927 1.22522 1.01385 0.97927 0.97261 1.21832 0.79401 1.01745 0.98169 1.48171 1.07713 1.56647 1.20188 1.20337 0.86382 0.78600 0.84139 1.90731 1.15718 1.56540 1.79090 1.21438 0.98689 0.99229 0.94032 1.21609 1.01138 0.97924 0.94686 1.22511 0.96459 1.03078 0.97265 1.21165 0.88732 0.83466 0.81619 1.93002 1.88779 1.84120 1.52701 1.93003 1.72290 1.59393 1.93222 1.22538 1.01593 0.97824 0.97532 1.21300 0.96989 1.01512 0.93726 0.91645 0.94218 0.91262 0.90820 0.92155 0.78139 0.93535 0.90805 0.93319 0.90971 0.89657 0.88453 0.90194 0.89001 0.88517 0.89009 0.88754 0.89279 0.89933 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 7.59 37.16 0.28 -1.76 16 2 C 0.14 2.34 3.19 -67.60 -0.22 2.12 16 3 H 0.08 1.47 6.65 -51.93 -0.35 1.12 16 4 C -0.13 -2.12 5.07 -26.62 -0.13 -2.26 16 5 C 0.17 3.12 3.10 -67.89 -0.21 2.91 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 N -0.72 -16.37 4.31 -53.38 -0.23 -16.60 16 8 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -26.73 13.06 55.49 0.72 -26.01 16 12 Si 0.90 21.42 29.55 -169.99 -5.02 16.40 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 C -0.15 -2.30 5.78 -26.61 -0.15 -2.45 16 17 C 0.11 1.59 4.77 -3.71 -0.02 1.57 16 18 N -0.59 -8.77 2.97 -165.22 -0.49 -9.26 16 19 C 0.52 7.29 6.90 -10.98 -0.08 7.21 16 20 O -0.54 -8.89 11.38 5.56 0.06 -8.83 16 21 C -0.11 -1.18 1.67 -91.77 -0.15 -1.33 16 22 C -0.12 -1.18 4.73 -26.73 -0.13 -1.31 16 23 C -0.16 -1.35 5.45 -26.73 -0.15 -1.49 16 24 C 0.29 2.82 2.10 -26.73 -0.06 2.77 16 25 F -0.21 -2.24 17.06 2.25 0.04 -2.21 16 26 F -0.20 -2.39 16.02 2.25 0.04 -2.35 16 27 C -0.16 -1.28 5.45 -26.75 -0.15 -1.43 16 28 C -0.10 -0.96 4.41 -26.75 -0.12 -1.08 16 29 H 0.06 1.04 6.80 -51.93 -0.35 0.69 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.16 6.70 -51.93 -0.35 0.81 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.38 9.35 6.07 -40.82 -0.25 9.10 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.81 4.95 -51.93 -0.26 0.55 16 39 H 0.09 1.47 7.74 -51.93 -0.40 1.07 16 40 H 0.10 0.86 7.11 -51.93 -0.37 0.49 16 41 H 0.08 0.93 7.80 -51.93 -0.41 0.52 16 42 H 0.09 0.97 6.00 -51.93 -0.31 0.66 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.08 0.96 7.67 -51.93 -0.40 0.56 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -29.27 364.45 -8.54 -37.80 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.63 Total: 8.80 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.52 Total: -3.23 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.00 Total: -51.87 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.06 Total: -8.83 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.07 Total: -4.56 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.27 -8.54 -37.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044752036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.598 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds