Wall clock time and date at job start Tue Mar 31 2020 17:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.58154 * 2 1 4 4 C 1.53189 * 109.58883 * 120.43201 * 2 1 3 5 5 C 1.53034 * 109.31353 * 174.42219 * 4 2 1 6 6 H 1.09003 * 109.46294 * 178.62915 * 5 4 2 7 7 N 1.46502 * 109.46214 * 58.65590 * 5 4 2 8 8 C 1.36933 * 120.00142 * 154.99817 * 7 5 4 9 9 H 1.07992 * 120.00116 * 0.02562 * 8 7 5 10 10 C 1.38815 * 120.00054 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99734 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00155 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46977 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47019 * 120.00112 * 12 10 8 15 15 H 1.48495 * 109.47048 * 239.99965 * 12 10 8 16 16 C 1.53048 * 109.54034 * 298.63538 * 5 4 2 17 17 C 1.53195 * 109.30793 * 61.36484 * 16 5 4 18 18 N 1.46924 * 108.77796 * 305.36429 * 17 16 5 19 19 C 1.34778 * 120.63387 * 233.88979 * 18 17 16 20 20 O 1.21281 * 120.00456 * 176.44000 * 19 18 17 21 21 C 1.50700 * 119.99672 * 356.43300 * 19 18 17 22 22 C 1.52995 * 109.47338 * 292.19821 * 21 19 18 23 23 C 1.53004 * 109.47305 * 180.02562 * 22 21 19 24 24 C 1.52999 * 109.47188 * 59.99903 * 23 22 21 25 25 F 1.39903 * 109.46947 * 180.02562 * 24 23 22 26 26 F 1.39896 * 109.46868 * 60.00252 * 24 23 22 27 27 C 1.53003 * 109.46986 * 300.00022 * 24 23 22 28 28 C 1.52999 * 109.46990 * 172.19825 * 21 19 18 29 29 H 1.09000 * 109.46713 * 176.33225 * 1 2 3 30 30 H 1.08996 * 109.47085 * 296.33261 * 1 2 3 31 31 H 1.09007 * 109.47115 * 56.33231 * 1 2 3 32 32 H 1.08992 * 109.49689 * 294.37705 * 4 2 1 33 33 H 1.08999 * 109.49339 * 54.47369 * 4 2 1 34 34 H 0.97004 * 119.99326 * 335.00104 * 7 5 4 35 35 H 0.97005 * 119.99907 * 180.02562 * 11 10 8 36 36 H 1.08997 * 109.49579 * 181.31530 * 16 5 4 37 37 H 1.09000 * 109.49698 * 301.41653 * 16 5 4 38 38 H 1.09002 * 109.58578 * 185.58154 * 17 16 5 39 39 H 1.08996 * 109.58889 * 65.15592 * 17 16 5 40 40 H 1.09002 * 109.47185 * 52.19820 * 21 19 18 41 41 H 1.08999 * 109.47249 * 299.99671 * 22 21 19 42 42 H 1.09006 * 109.47629 * 60.00001 * 22 21 19 43 43 H 1.09002 * 109.47020 * 299.99878 * 23 22 21 44 44 H 1.08996 * 109.47435 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.47203 * 300.00013 * 27 24 23 46 46 H 1.08996 * 109.47019 * 179.97438 * 27 24 23 47 47 H 1.09004 * 109.47076 * 300.00092 * 28 21 19 48 48 H 1.08999 * 109.47396 * 60.00452 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1689 6 1 3.9379 -1.3478 2.0649 7 7 4.1571 0.4884 1.0755 8 6 5.4414 0.7018 1.4998 9 1 6.0199 -0.1162 1.9029 10 6 5.9999 1.9696 1.4118 11 7 5.2946 2.9667 0.9210 12 14 7.7521 2.2606 1.9900 13 1 8.3241 0.9873 2.4964 14 1 8.5721 2.7555 0.8550 15 1 7.7529 3.2706 3.0785 16 6 3.9570 -1.6656 -0.0658 17 6 3.4651 -0.9450 -1.3251 18 7 2.0226 -0.6979 -1.1955 19 6 1.1668 -1.1085 -2.1523 20 8 -0.0273 -0.9563 -2.0039 21 6 1.6936 -1.7567 -3.4066 22 6 2.4613 -0.7220 -4.2317 23 6 2.9956 -1.3800 -5.5055 24 6 1.8256 -1.9225 -6.3287 25 9 2.3142 -2.5246 -7.4931 26 9 0.9692 -0.8706 -6.6712 27 6 1.0579 -2.9573 -5.5036 28 6 0.5239 -2.2996 -4.2300 29 1 -0.3633 -1.0256 -0.0657 30 1 -0.3633 0.4558 0.9210 31 1 -0.3634 0.5697 -0.8553 32 1 1.7661 -0.1697 2.1365 33 1 1.6031 -1.7270 1.2889 34 1 3.6376 1.2231 0.7131 35 1 5.6850 3.8526 0.8591 36 1 5.0413 -1.7693 -0.1061 37 1 3.4984 -2.6528 -0.0089 38 1 3.6518 -1.5687 -2.1994 39 1 3.9903 0.0040 -1.4318 40 1 2.3610 -2.5761 -3.1394 41 1 1.7938 0.0972 -4.4990 42 1 3.2946 -0.3352 -3.6451 43 1 3.6629 -2.1995 -5.2387 44 1 3.5429 -0.6430 -6.0931 45 1 1.7252 -3.7768 -5.2367 46 1 0.2241 -3.3434 -6.0898 47 1 -0.0230 -3.0368 -3.6422 48 1 -0.1435 -1.4804 -4.4973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044752036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:10 Heat of formation + Delta-G solvation = -143.994763 kcal Electronic energy + Delta-G solvation = -30574.859196 eV Core-core repulsion = 26299.646908 eV Total energy + Delta-G solvation = -4275.212288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.94273 -47.94728 -41.80854 -39.22953 -37.97974 -35.85383 -34.05323 -33.60045 -32.09860 -31.14715 -30.61756 -28.33337 -25.78494 -25.38249 -24.49926 -24.16049 -22.88171 -21.52407 -20.70933 -19.66368 -19.15584 -18.34021 -17.89057 -17.69400 -17.23216 -17.03531 -16.67337 -16.14694 -15.67599 -15.50394 -15.41560 -15.18367 -14.85547 -14.72452 -14.54729 -14.32276 -14.26002 -14.07760 -13.82765 -13.51512 -13.37790 -13.31359 -13.15710 -12.88801 -12.87105 -12.74163 -12.58034 -12.51558 -12.44428 -12.19872 -12.04667 -11.94938 -11.86377 -11.69038 -11.58012 -11.33043 -11.10779 -10.87593 -9.94723 -9.44465 -8.93187 -7.88925 -5.15825 1.49630 1.51415 1.59828 1.67428 2.04822 2.60166 2.82177 3.13451 3.24265 3.42325 3.45479 3.71363 3.79030 3.85341 3.91548 3.99568 4.05807 4.08758 4.12267 4.25821 4.31515 4.37700 4.40957 4.53761 4.61444 4.64394 4.71515 4.77952 4.82154 4.87936 4.88477 4.94734 4.95777 5.00198 5.09673 5.14163 5.17935 5.25748 5.30957 5.33800 5.38953 5.44819 5.60377 5.77295 6.33159 6.58735 7.27154 7.40397 8.16802 8.39685 9.34540 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014705 B = 0.003439 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.636957 B = 8139.168353 C = 9241.187330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.146 3.854 3 H 0.047 0.953 4 C -0.122 4.122 5 C 0.165 3.835 6 H 0.046 0.954 7 N -0.731 5.731 8 C -0.227 4.227 9 H 0.077 0.923 10 C -0.073 4.073 11 N -0.970 5.970 12 Si 0.963 3.037 13 H -0.265 1.265 14 H -0.297 1.297 15 H -0.301 1.301 16 C -0.141 4.141 17 C 0.117 3.883 18 N -0.596 5.596 19 C 0.513 3.487 20 O -0.567 6.567 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.150 4.150 24 C 0.277 3.723 25 F -0.211 7.211 26 F -0.217 7.217 27 C -0.149 4.149 28 C -0.092 4.092 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.372 0.628 35 H 0.247 0.753 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.051 0.949 40 H 0.129 0.871 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.123 0.877 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.710 -15.522 -11.695 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.042 3.958 3 H 0.065 0.935 4 C -0.160 4.160 5 C 0.056 3.944 6 H 0.064 0.936 7 N -0.372 5.372 8 C -0.360 4.360 9 H 0.095 0.905 10 C -0.265 4.265 11 N -0.621 5.621 12 Si 0.794 3.206 13 H -0.190 1.190 14 H -0.225 1.225 15 H -0.229 1.229 16 C -0.182 4.182 17 C -0.005 4.005 18 N -0.328 5.328 19 C 0.303 3.697 20 O -0.447 6.447 21 C -0.126 4.126 22 C -0.150 4.150 23 C -0.188 4.188 24 C 0.241 3.759 25 F -0.192 7.192 26 F -0.198 7.198 27 C -0.186 4.186 28 C -0.130 4.130 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.205 0.795 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.069 0.931 40 H 0.147 0.853 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.143 0.857 44 H 0.110 0.890 45 H 0.141 0.859 46 H 0.114 0.886 47 H 0.106 0.894 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.165 -15.478 -11.558 20.604 hybrid contribution 0.796 1.413 0.169 1.631 sum -6.369 -14.065 -11.389 19.186 Atomic orbital electron populations 1.22027 0.92573 1.02732 1.00122 1.21100 0.95140 0.94684 0.84854 0.93506 1.22112 0.95883 1.01167 0.96877 1.20451 0.91521 0.86197 0.96201 0.93583 1.42680 1.12954 1.06349 1.75242 1.19631 0.90729 0.93947 1.31648 0.90501 1.25403 1.01634 0.96058 1.03430 1.69817 1.37860 1.00606 1.53816 0.85209 0.80918 0.77628 0.76832 1.18960 1.22468 1.22934 1.22383 1.01231 0.98769 0.95803 1.21784 0.78644 1.00666 0.99393 1.48188 1.08036 1.56599 1.19990 1.20991 0.85984 0.78036 0.84703 1.90724 1.16931 1.57455 1.79638 1.21476 0.99397 0.99696 0.92029 1.21534 1.00514 0.97450 0.95481 1.22514 0.96283 1.03950 0.96004 1.21530 0.89158 0.83561 0.81640 1.92990 1.88857 1.84150 1.53174 1.92972 1.72971 1.60432 1.93414 1.22528 1.02228 0.97709 0.96173 1.21223 0.96387 1.00874 0.94513 0.91624 0.93442 0.92906 0.91657 0.89887 0.79450 0.94399 0.91435 0.90261 0.87057 0.93086 0.85314 0.92435 0.89278 0.85667 0.88997 0.85889 0.88640 0.89390 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 7.59 71.98 0.55 -3.07 16 2 C 0.15 4.71 3.19 44.97 0.14 4.85 16 3 H 0.05 1.82 6.65 -2.39 -0.02 1.81 16 4 C -0.12 -3.74 5.07 30.67 0.16 -3.59 16 5 C 0.16 5.73 3.10 45.02 0.14 5.87 16 6 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 7 N -0.73 -33.34 4.31 -322.81 -1.39 -34.73 16 8 C -0.23 -11.65 9.93 84.03 0.83 -10.82 16 9 H 0.08 3.78 7.83 -2.91 -0.02 3.75 16 10 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 11 N -0.97 -57.19 13.06 21.65 0.28 -56.90 16 12 Si 0.96 44.37 29.55 68.60 2.03 46.40 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 15 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 16 C -0.14 -3.96 5.78 30.68 0.18 -3.78 16 17 C 0.12 3.13 4.77 86.36 0.41 3.54 16 18 N -0.60 -16.86 2.97 -795.02 -2.36 -19.23 16 19 C 0.51 13.70 6.90 87.66 0.60 14.30 16 20 O -0.57 -18.26 11.38 -3.03 -0.03 -18.30 16 21 C -0.11 -1.92 1.67 -11.54 -0.02 -1.94 16 22 C -0.11 -2.09 4.73 30.59 0.14 -1.95 16 23 C -0.15 -2.20 5.45 30.60 0.17 -2.04 16 24 C 0.28 4.87 2.10 30.59 0.06 4.93 16 25 F -0.21 -4.13 17.06 44.97 0.77 -3.37 16 26 F -0.22 -5.12 16.02 44.97 0.72 -4.40 16 27 C -0.15 -1.97 5.45 30.58 0.17 -1.80 16 28 C -0.09 -1.61 4.41 30.58 0.13 -1.47 16 29 H 0.06 2.02 6.80 -2.39 -0.02 2.01 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.79 6.70 -2.38 -0.02 1.78 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.37 18.72 6.07 -92.71 -0.56 18.16 16 35 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.11 2.08 4.95 -2.39 -0.01 2.07 16 39 H 0.05 1.75 7.74 -2.39 -0.02 1.73 16 40 H 0.13 1.61 7.11 -2.39 -0.02 1.59 16 41 H 0.06 1.34 7.80 -2.39 -0.02 1.32 16 42 H 0.09 1.73 6.00 -2.38 -0.01 1.72 16 43 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 48 H 0.06 1.31 7.67 -2.39 -0.02 1.29 16 Total: -1.00 -64.98 364.45 4.55 -60.43 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.40 Total: 30.57 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 4.14 Total: -0.47 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -3.47 Total: -110.86 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.03 Total: -18.30 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 1.49 Total: -7.77 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.98 4.55 -60.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044752036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.567 kcal (2) G-P(sol) polarization free energy of solvation -64.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds