Wall clock time and date at job start Tue Mar 31 2020 17:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.70395 * 2 1 4 4 C 1.53192 * 109.58960 * 120.35952 * 2 1 3 5 5 C 1.53041 * 109.31151 * 65.14655 * 4 2 1 6 6 H 1.08999 * 109.46238 * 301.34622 * 5 4 2 7 7 N 1.46506 * 109.44688 * 181.38157 * 5 4 2 8 8 C 1.36932 * 119.99851 * 154.93956 * 7 5 4 9 9 H 1.08003 * 120.00019 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00147 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99743 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00382 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46737 * 60.00176 * 12 10 8 14 14 H 1.48495 * 109.47173 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46808 * 300.00435 * 12 10 8 16 16 C 1.53041 * 109.53927 * 61.36853 * 5 4 2 17 17 C 1.53186 * 109.31167 * 298.63582 * 16 5 4 18 18 N 1.46924 * 108.77798 * 54.63514 * 17 16 5 19 19 C 1.34778 * 120.63330 * 126.11929 * 18 17 16 20 20 O 1.21475 * 120.00053 * 178.76346 * 19 18 17 21 21 C 1.48455 * 119.99624 * 358.76086 * 19 18 17 22 22 C 1.39539 * 120.54484 * 202.64513 * 21 19 18 23 23 C 1.38766 * 118.25977 * 179.80699 * 22 21 19 24 24 N 1.32202 * 119.14725 * 0.46572 * 23 22 21 25 25 C 1.31879 * 121.03592 * 359.75539 * 24 23 22 26 26 C 1.50699 * 119.04083 * 179.97438 * 25 24 23 27 27 C 1.53006 * 117.49896 * 8.76166 * 26 25 24 28 28 C 1.52999 * 117.49896 * 300.10296 * 26 25 24 29 29 N 1.31583 * 121.92027 * 0.02562 * 25 24 23 30 30 H 1.09000 * 109.47403 * 180.35555 * 1 2 3 31 31 H 1.09001 * 109.46732 * 300.35407 * 1 2 3 32 32 H 1.08994 * 109.47324 * 60.34835 * 1 2 3 33 33 H 1.09003 * 109.49644 * 305.19817 * 4 2 1 34 34 H 1.08999 * 109.52644 * 185.11650 * 4 2 1 35 35 H 0.96995 * 119.99976 * 334.93927 * 7 5 4 36 36 H 0.97005 * 119.99984 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.49756 * 178.67930 * 16 5 4 38 38 H 1.09006 * 109.49217 * 58.58374 * 16 5 4 39 39 H 1.09003 * 109.58530 * 294.84549 * 17 16 5 40 40 H 1.09001 * 109.70376 * 174.49388 * 17 16 5 41 41 H 1.07995 * 120.86902 * 359.97438 * 22 21 19 42 42 H 1.08000 * 120.42304 * 180.24057 * 23 22 21 43 43 H 1.09006 * 115.55379 * 154.43594 * 26 25 24 44 44 H 1.08992 * 117.49523 * 0.02562 * 27 26 25 45 45 H 1.08997 * 117.49779 * 145.02301 * 27 26 25 46 46 H 1.08996 * 117.50547 * 214.98513 * 28 26 25 47 47 H 1.09009 * 117.49750 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 1.6414 -2.2041 1.1700 6 1 0.5564 -2.2815 1.0993 7 7 2.1026 -2.8977 2.3753 8 6 1.4646 -4.0331 2.7983 9 1 0.6217 -4.4175 2.2431 10 6 1.9018 -4.6905 3.9400 11 7 2.9294 -4.2223 4.6162 12 14 1.0311 -6.2391 4.5175 13 1 1.1069 -7.2747 3.4559 14 1 1.6860 -6.7446 5.7506 15 1 -0.3923 -5.9284 4.8052 16 6 2.2799 -2.8465 -0.0636 17 6 1.7690 -2.1410 -1.3238 18 7 2.0225 -0.6996 -1.1945 19 6 2.6988 -0.0328 -2.1509 20 8 2.8824 1.1632 -2.0431 21 6 3.2192 -0.7599 -3.3359 22 6 4.2826 -0.2411 -4.0756 23 6 4.7339 -0.9622 -5.1720 24 7 4.1401 -2.1020 -5.4817 25 6 3.1340 -2.5617 -4.7635 26 6 2.4897 -3.8658 -5.1575 27 6 3.1727 -4.6892 -6.2514 28 6 1.8648 -3.9524 -6.5514 29 7 2.6757 -1.9143 -3.7136 30 1 -0.3634 -1.0276 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8930 33 1 1.6076 -0.2785 2.1368 34 1 3.1297 -0.6505 1.2918 35 1 2.8598 -2.5526 2.8736 36 1 3.2347 -4.6815 5.4142 37 1 2.0121 -3.9023 -0.1038 38 1 3.3639 -2.7475 -0.0054 39 1 0.6985 -2.3155 -1.4317 40 1 2.2922 -2.5270 -2.1987 41 1 4.7441 0.6956 -3.8004 42 1 5.5572 -0.5951 -5.7667 43 1 1.9981 -4.4099 -4.3509 44 1 4.0881 -4.2877 -6.6858 45 1 3.1301 -5.7748 -6.1647 46 1 0.9624 -4.5536 -6.6620 47 1 1.9194 -3.0659 -7.1833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044758122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:23 Heat of formation + Delta-G solvation = 69.746553 kcal Electronic energy + Delta-G solvation = -28644.538402 eV Core-core repulsion = 24829.283820 eV Total energy + Delta-G solvation = -3815.254583 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.71730 -39.99351 -37.77836 -37.19937 -34.76704 -34.23449 -32.27842 -31.96729 -31.74462 -29.34231 -27.30850 -26.06670 -25.36677 -24.10516 -22.96817 -22.73201 -22.60103 -21.34957 -20.35412 -18.71497 -18.17177 -17.53648 -17.00860 -16.36780 -16.00305 -15.70598 -15.56141 -15.00479 -14.86293 -14.50412 -14.38817 -14.03991 -13.84146 -13.49056 -13.42462 -12.99056 -12.77114 -12.55574 -12.43384 -11.87909 -11.82354 -11.71579 -11.29888 -11.24336 -11.16288 -11.00890 -10.89583 -10.84960 -10.79348 -10.65562 -10.44385 -10.37038 -10.22972 -9.75320 -9.64302 -9.60619 -9.18046 -8.79729 -8.52627 -6.96517 -5.77438 -3.06394 0.26994 0.56772 2.55108 2.78848 3.25508 3.40380 3.42747 3.47242 3.48255 3.59962 3.88688 4.17153 4.47550 4.55850 4.57433 4.64798 4.71099 4.82696 5.01646 5.17095 5.21939 5.29181 5.35697 5.36741 5.42518 5.52484 5.55744 5.63601 5.74759 5.75183 5.81066 5.84111 5.92607 5.93510 6.02505 6.13860 6.28517 6.35774 6.42565 6.48326 6.55061 6.56218 6.65936 6.92604 7.07620 7.41828 7.65904 7.67917 8.02415 8.40908 9.51937 10.09856 10.44628 11.45150 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.003373 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.046693 B = 8300.071078 C = 9787.836097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.096 0.904 4 C -0.133 4.133 5 C 0.178 3.822 6 H 0.051 0.949 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.150 4.150 17 C 0.075 3.925 18 N -0.571 5.571 19 C 0.566 3.434 20 O -0.537 6.537 21 C 0.145 3.855 22 C -0.181 4.181 23 C 0.155 3.845 24 N -0.506 5.506 25 C 0.345 3.655 26 C -0.105 4.105 27 C -0.152 4.152 28 C -0.154 4.154 29 N -0.478 5.478 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.130 0.870 41 H 0.160 0.840 42 H 0.177 0.823 43 H 0.134 0.866 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 5.712 -22.554 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.114 0.886 4 C -0.172 4.172 5 C 0.067 3.933 6 H 0.069 0.931 7 N -0.365 5.365 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.582 5.582 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.192 4.192 17 C -0.048 4.048 18 N -0.301 5.301 19 C 0.351 3.649 20 O -0.414 6.414 21 C -0.002 4.002 22 C -0.203 4.203 23 C -0.012 4.012 24 N -0.220 5.220 25 C 0.079 3.921 26 C -0.125 4.125 27 C -0.189 4.189 28 C -0.192 4.192 29 N -0.194 5.194 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.147 0.853 41 H 0.177 0.823 42 H 0.194 0.806 43 H 0.152 0.848 44 H 0.128 0.872 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.141 5.368 -22.620 23.248 hybrid contribution 0.277 -0.034 0.966 1.006 sum 0.136 5.334 -21.653 22.301 Atomic orbital electron populations 1.22126 0.94620 1.03008 1.01958 1.21322 0.94380 0.97045 0.83709 0.88570 1.22218 1.01311 0.97411 0.96246 1.20234 0.96840 0.89028 0.87154 0.93070 1.42429 1.37873 1.29386 1.26771 1.19187 1.10169 1.01172 1.06497 0.91242 1.24737 0.98483 0.99460 0.98202 1.69655 1.27556 1.41410 1.19531 0.86290 0.78847 0.83269 0.77916 1.21287 1.21728 1.21265 1.22683 1.00798 1.00598 0.95089 1.22918 1.02103 0.78071 1.01686 1.48167 1.51957 1.10611 1.19410 1.17793 0.78855 0.86225 0.81992 1.90771 1.59030 1.13686 1.77871 1.21719 0.92818 0.90637 0.95032 1.22925 0.97814 1.02892 0.96717 1.23324 0.96434 0.88629 0.92824 1.68041 1.09087 1.13898 1.30986 1.22285 0.88725 0.94840 0.86232 1.20697 1.04942 0.92489 0.94407 1.23046 0.97350 0.98464 1.00082 1.22999 0.97640 1.03157 0.95427 1.68217 1.29875 1.06827 1.14503 0.91455 0.91153 0.92840 0.90372 0.91892 0.78347 0.93474 0.90741 0.92756 0.91508 0.85336 0.82277 0.80551 0.84835 0.87218 0.87963 0.87747 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.03 37.16 0.34 -1.76 16 2 C 0.14 2.05 3.20 -67.60 -0.22 1.83 16 3 H 0.10 1.45 7.01 -51.93 -0.36 1.09 16 4 C -0.13 -2.24 5.02 -26.61 -0.13 -2.37 16 5 C 0.18 3.44 2.52 -67.88 -0.17 3.27 16 6 H 0.05 1.00 6.43 -51.93 -0.33 0.67 16 7 N -0.72 -17.89 5.12 -53.38 -0.27 -18.16 16 8 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 9 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 11 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 12 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 C -0.15 -2.66 5.66 -26.61 -0.15 -2.81 16 17 C 0.07 1.10 5.64 -3.71 -0.02 1.08 16 18 N -0.57 -8.57 2.68 -166.10 -0.45 -9.01 16 19 C 0.57 8.64 7.63 -12.05 -0.09 8.55 16 20 O -0.54 -9.16 16.05 5.39 0.09 -9.08 16 21 C 0.15 1.92 6.47 -82.64 -0.53 1.39 16 22 C -0.18 -1.90 9.72 -38.90 -0.38 -2.28 16 23 C 0.15 1.37 11.31 -17.20 -0.19 1.17 16 24 N -0.51 -5.35 9.33 -10.74 -0.10 -5.45 16 25 C 0.35 3.96 7.31 -157.30 -1.15 2.81 16 26 C -0.11 -0.98 6.23 -91.77 -0.57 -1.55 16 27 C -0.15 -1.14 10.01 -26.69 -0.27 -1.41 16 28 C -0.15 -1.14 10.24 -26.69 -0.27 -1.42 16 29 N -0.48 -6.12 6.47 -7.32 -0.05 -6.17 16 30 H 0.07 0.92 5.72 -51.93 -0.30 0.62 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.94 7.50 -51.93 -0.39 0.55 16 40 H 0.13 1.84 3.97 -75.72 -0.30 1.54 16 41 H 0.16 1.45 7.89 -52.49 -0.41 1.03 16 42 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.11 0.89 7.54 -51.93 -0.39 0.50 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -32.14 378.47 -10.44 -42.58 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -7.00 Total: 10.40 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -4.06 Total: -0.62 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -0.14 Total: -66.12 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.14 -10.44 -42.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.327 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds