Wall clock time and date at job start Tue Mar 31 2020 17:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.70395 * 2 1 4 4 C 1.53192 * 109.58960 * 120.35952 * 2 1 3 5 5 C 1.53041 * 109.31151 * 65.14655 * 4 2 1 6 6 H 1.08999 * 109.46238 * 301.34622 * 5 4 2 7 7 N 1.46506 * 109.44688 * 181.38157 * 5 4 2 8 8 C 1.36932 * 119.99851 * 154.93956 * 7 5 4 9 9 H 1.08003 * 120.00019 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00147 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99743 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00382 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46737 * 60.00176 * 12 10 8 14 14 H 1.48495 * 109.47173 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46808 * 300.00435 * 12 10 8 16 16 C 1.53041 * 109.53927 * 61.36853 * 5 4 2 17 17 C 1.53186 * 109.31167 * 298.63582 * 16 5 4 18 18 N 1.46924 * 108.77798 * 54.63514 * 17 16 5 19 19 C 1.34778 * 120.63330 * 126.11929 * 18 17 16 20 20 O 1.21475 * 120.00053 * 178.76346 * 19 18 17 21 21 C 1.48455 * 119.99624 * 358.76086 * 19 18 17 22 22 C 1.39539 * 120.54484 * 202.64513 * 21 19 18 23 23 C 1.38766 * 118.25977 * 179.80699 * 22 21 19 24 24 N 1.32202 * 119.14725 * 0.46572 * 23 22 21 25 25 C 1.31879 * 121.03592 * 359.75539 * 24 23 22 26 26 C 1.50699 * 119.04083 * 179.97438 * 25 24 23 27 27 C 1.53006 * 117.49896 * 8.76166 * 26 25 24 28 28 C 1.52999 * 117.49896 * 300.10296 * 26 25 24 29 29 N 1.31583 * 121.92027 * 0.02562 * 25 24 23 30 30 H 1.09000 * 109.47403 * 180.35555 * 1 2 3 31 31 H 1.09001 * 109.46732 * 300.35407 * 1 2 3 32 32 H 1.08994 * 109.47324 * 60.34835 * 1 2 3 33 33 H 1.09003 * 109.49644 * 305.19817 * 4 2 1 34 34 H 1.08999 * 109.52644 * 185.11650 * 4 2 1 35 35 H 0.96995 * 119.99976 * 334.93927 * 7 5 4 36 36 H 0.97005 * 119.99984 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.49756 * 178.67930 * 16 5 4 38 38 H 1.09006 * 109.49217 * 58.58374 * 16 5 4 39 39 H 1.09003 * 109.58530 * 294.84549 * 17 16 5 40 40 H 1.09001 * 109.70376 * 174.49388 * 17 16 5 41 41 H 1.07995 * 120.86902 * 359.97438 * 22 21 19 42 42 H 1.08000 * 120.42304 * 180.24057 * 23 22 21 43 43 H 1.09006 * 115.55379 * 154.43594 * 26 25 24 44 44 H 1.08992 * 117.49523 * 0.02562 * 27 26 25 45 45 H 1.08997 * 117.49779 * 145.02301 * 27 26 25 46 46 H 1.08996 * 117.50547 * 214.98513 * 28 26 25 47 47 H 1.09009 * 117.49750 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 1.6414 -2.2041 1.1700 6 1 0.5564 -2.2815 1.0993 7 7 2.1026 -2.8977 2.3753 8 6 1.4646 -4.0331 2.7983 9 1 0.6217 -4.4175 2.2431 10 6 1.9018 -4.6905 3.9400 11 7 2.9294 -4.2223 4.6162 12 14 1.0311 -6.2391 4.5175 13 1 1.1069 -7.2747 3.4559 14 1 1.6860 -6.7446 5.7506 15 1 -0.3923 -5.9284 4.8052 16 6 2.2799 -2.8465 -0.0636 17 6 1.7690 -2.1410 -1.3238 18 7 2.0225 -0.6996 -1.1945 19 6 2.6988 -0.0328 -2.1509 20 8 2.8824 1.1632 -2.0431 21 6 3.2192 -0.7599 -3.3359 22 6 4.2826 -0.2411 -4.0756 23 6 4.7339 -0.9622 -5.1720 24 7 4.1401 -2.1020 -5.4817 25 6 3.1340 -2.5617 -4.7635 26 6 2.4897 -3.8658 -5.1575 27 6 3.1727 -4.6892 -6.2514 28 6 1.8648 -3.9524 -6.5514 29 7 2.6757 -1.9143 -3.7136 30 1 -0.3634 -1.0276 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8930 33 1 1.6076 -0.2785 2.1368 34 1 3.1297 -0.6505 1.2918 35 1 2.8598 -2.5526 2.8736 36 1 3.2347 -4.6815 5.4142 37 1 2.0121 -3.9023 -0.1038 38 1 3.3639 -2.7475 -0.0054 39 1 0.6985 -2.3155 -1.4317 40 1 2.2922 -2.5270 -2.1987 41 1 4.7441 0.6956 -3.8004 42 1 5.5572 -0.5951 -5.7667 43 1 1.9981 -4.4099 -4.3509 44 1 4.0881 -4.2877 -6.6858 45 1 3.1301 -5.7748 -6.1647 46 1 0.9624 -4.5536 -6.6620 47 1 1.9194 -3.0659 -7.1833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044758122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:22 Heat of formation + Delta-G solvation = 51.255738 kcal Electronic energy + Delta-G solvation = -28645.340224 eV Core-core repulsion = 24829.283820 eV Total energy + Delta-G solvation = -3816.056405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.61820 -41.15730 -39.07945 -37.91429 -36.34358 -35.32265 -33.76230 -33.26054 -32.81120 -31.07613 -28.68876 -27.02003 -26.18253 -25.86885 -24.37478 -23.80982 -23.19877 -22.64406 -21.44905 -19.97629 -19.31526 -18.88760 -18.44947 -17.51780 -16.84527 -16.71425 -16.67538 -16.51394 -15.90940 -15.67002 -15.40081 -15.32531 -15.16034 -14.94620 -14.87610 -14.42311 -14.03058 -13.90872 -13.38900 -13.12336 -12.96345 -12.85250 -12.76509 -12.49699 -12.38877 -12.22309 -12.20354 -12.04978 -11.98778 -11.90499 -11.81069 -11.63968 -11.55018 -11.35335 -11.14713 -10.91304 -10.40861 -10.05037 -9.77957 -8.99404 -7.92937 -5.21844 -0.64578 -0.21171 1.47534 1.48303 1.50722 1.56682 1.67933 2.44612 2.53747 2.57908 2.84635 3.12261 3.28098 3.40384 3.63443 3.71145 3.81370 3.88409 3.93903 4.04722 4.11035 4.13146 4.16003 4.22436 4.34713 4.45040 4.50306 4.51981 4.56816 4.66344 4.82427 4.82640 4.92494 4.97236 4.99404 5.03085 5.04438 5.17289 5.21821 5.26449 5.32646 5.35585 5.48251 5.52202 5.61720 5.71538 6.21503 6.28487 6.75390 6.90956 7.34443 8.09562 8.33378 9.30560 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.003373 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.046693 B = 8300.071078 C = 9787.836097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 H 0.096 0.904 4 C -0.122 4.122 5 C 0.175 3.825 6 H 0.055 0.945 7 N -0.737 5.737 8 C -0.237 4.237 9 H 0.078 0.922 10 C -0.076 4.076 11 N -0.972 5.972 12 Si 0.971 3.029 13 H -0.277 1.277 14 H -0.299 1.299 15 H -0.277 1.277 16 C -0.138 4.138 17 C 0.088 3.912 18 N -0.575 5.575 19 C 0.565 3.435 20 O -0.559 6.559 21 C 0.119 3.881 22 C -0.179 4.179 23 C 0.167 3.833 24 N -0.510 5.510 25 C 0.336 3.664 26 C -0.127 4.127 27 C -0.142 4.142 28 C -0.142 4.142 29 N -0.495 5.495 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.370 0.630 36 H 0.250 0.750 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.140 0.860 41 H 0.172 0.828 42 H 0.221 0.779 43 H 0.133 0.867 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.295 5.391 -24.920 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.161 4.161 5 C 0.067 3.933 6 H 0.073 0.927 7 N -0.376 5.376 8 C -0.369 4.369 9 H 0.096 0.904 10 C -0.268 4.268 11 N -0.623 5.623 12 Si 0.800 3.200 13 H -0.203 1.203 14 H -0.225 1.225 15 H -0.203 1.203 16 C -0.179 4.179 17 C -0.035 4.035 18 N -0.305 5.305 19 C 0.351 3.649 20 O -0.438 6.438 21 C -0.027 4.027 22 C -0.202 4.202 23 C 0.000 4.000 24 N -0.225 5.225 25 C 0.071 3.929 26 C -0.147 4.147 27 C -0.180 4.180 28 C -0.181 4.181 29 N -0.212 5.212 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.157 0.843 41 H 0.189 0.811 42 H 0.237 0.763 43 H 0.151 0.849 44 H 0.123 0.877 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.795 5.054 -25.035 25.553 hybrid contribution 0.516 0.128 1.583 1.670 sum -0.279 5.182 -23.452 24.019 Atomic orbital electron populations 1.22075 0.92948 1.02991 1.03026 1.21272 0.95604 0.96514 0.82692 0.88622 1.22079 1.00489 0.95961 0.97609 1.20439 0.96931 0.90143 0.85836 0.92742 1.42645 1.37426 1.29283 1.28284 1.19591 1.09796 1.01431 1.06048 0.90406 1.25539 0.99616 1.02784 0.98859 1.69823 1.29487 1.42957 1.20033 0.85249 0.77902 0.79781 0.77080 1.20337 1.22501 1.20299 1.22474 0.99513 1.00128 0.95830 1.22837 1.02718 0.77730 1.00198 1.48210 1.52129 1.10595 1.19530 1.18119 0.78172 0.86107 0.82472 1.90745 1.59791 1.14651 1.78614 1.21561 0.94416 0.91502 0.95182 1.23159 0.96926 1.03384 0.96681 1.24045 0.96457 0.87436 0.92071 1.68152 1.08909 1.14546 1.30846 1.22685 0.88965 0.95345 0.85949 1.20825 1.06385 0.92183 0.95327 1.23099 0.97175 0.99133 0.98551 1.23063 0.98322 1.03065 0.93616 1.68040 1.30544 1.07028 1.15555 0.91918 0.89961 0.91938 0.90360 0.93221 0.79900 0.94165 0.91882 0.94514 0.90412 0.84349 0.81052 0.76256 0.84921 0.87719 0.86448 0.86085 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.03 71.98 0.65 -3.15 16 2 C 0.14 4.14 3.20 44.97 0.14 4.29 16 3 H 0.10 2.85 7.01 -2.39 -0.02 2.84 16 4 C -0.12 -4.16 5.02 30.67 0.15 -4.01 16 5 C 0.17 6.81 2.52 45.02 0.11 6.92 16 6 H 0.05 2.11 6.43 -2.39 -0.02 2.09 16 7 N -0.74 -37.08 5.12 -322.80 -1.65 -38.74 16 8 C -0.24 -12.97 9.93 84.03 0.83 -12.14 16 9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 11 N -0.97 -59.75 13.06 21.65 0.28 -59.46 16 12 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 C -0.14 -4.94 5.66 30.67 0.17 -4.77 16 17 C 0.09 2.53 5.64 86.36 0.49 3.02 16 18 N -0.57 -17.00 2.68 -797.73 -2.14 -19.14 16 19 C 0.56 17.01 7.63 86.97 0.66 17.67 16 20 O -0.56 -18.91 16.05 -3.64 -0.06 -18.97 16 21 C 0.12 3.06 6.47 42.00 0.27 3.33 16 22 C -0.18 -3.46 9.72 22.71 0.22 -3.24 16 23 C 0.17 2.51 11.31 84.76 0.96 3.46 16 24 N -0.51 -9.74 9.33 -187.89 -1.75 -11.50 16 25 C 0.34 7.29 7.31 138.79 1.01 8.30 16 26 C -0.13 -2.19 6.23 -11.54 -0.07 -2.26 16 27 C -0.14 -1.85 10.01 30.62 0.31 -1.55 16 28 C -0.14 -1.83 10.24 30.62 0.31 -1.51 16 29 N -0.49 -12.26 6.47 -177.08 -1.15 -13.40 16 30 H 0.06 1.62 5.72 -2.39 -0.01 1.60 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.37 20.30 7.80 -92.71 -0.72 19.57 16 36 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.08 2.10 7.50 -2.39 -0.02 2.08 16 40 H 0.14 3.89 3.97 -49.36 -0.20 3.70 16 41 H 0.17 2.81 7.89 -2.91 -0.02 2.79 16 42 H 0.22 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.10 1.49 7.54 -2.39 -0.02 1.47 16 45 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -69.79 378.47 2.35 -67.44 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.09 Total: 35.44 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 6.70 Total: 10.50 kcal Atomic # 7 Polarization: -135.83 SS G_CDS: -6.41 Total: -142.24 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.06 Total: -18.97 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.79 2.35 -67.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.693 kcal (2) G-P(sol) polarization free energy of solvation -69.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds