Wall clock time and date at job start Tue Mar 31 2020 17:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.58537 * 2 1 4 4 C 1.53196 * 109.58510 * 239.56935 * 2 1 3 5 5 C 1.53033 * 109.31495 * 294.85130 * 4 2 1 6 6 H 1.08997 * 109.46342 * 58.65072 * 5 4 2 7 7 N 1.46492 * 109.46296 * 178.61509 * 5 4 2 8 8 C 1.36940 * 120.00355 * 204.99864 * 7 5 4 9 9 H 1.07999 * 119.99520 * 359.97438 * 8 7 5 10 10 C 1.38816 * 120.00144 * 179.97438 * 8 7 5 11 11 N 1.31615 * 120.00051 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99811 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46859 * 90.00355 * 12 10 8 14 14 H 1.48498 * 109.47283 * 209.99899 * 12 10 8 15 15 H 1.48503 * 109.47392 * 330.00801 * 12 10 8 16 16 C 1.53046 * 109.53811 * 298.63300 * 5 4 2 17 17 C 1.52767 * 109.38105 * 61.23975 * 16 5 4 18 18 N 1.46925 * 109.58427 * 120.28313 * 2 1 3 19 19 C 1.34782 * 120.62803 * 246.14915 * 18 2 1 20 20 O 1.21470 * 120.00277 * 0.49763 * 19 18 2 21 21 C 1.48458 * 119.99659 * 180.49234 * 19 18 2 22 22 C 1.39541 * 120.54716 * 160.23461 * 21 19 18 23 23 C 1.38755 * 118.26287 * 180.02562 * 22 21 19 24 24 N 1.32206 * 119.14826 * 359.97438 * 23 22 21 25 25 C 1.31884 * 121.03704 * 0.02562 * 24 23 22 26 26 C 1.50703 * 119.04046 * 179.97438 * 25 24 23 27 27 C 1.52992 * 117.50154 * 8.74479 * 26 25 24 28 28 C 1.52999 * 117.49720 * 300.08134 * 26 25 24 29 29 N 1.31581 * 121.91542 * 359.97438 * 25 24 23 30 30 H 1.09007 * 109.47010 * 299.71983 * 1 2 3 31 31 H 1.08996 * 109.47188 * 59.71629 * 1 2 3 32 32 H 1.08994 * 109.47183 * 179.72003 * 1 2 3 33 33 H 1.09005 * 109.49041 * 54.80059 * 4 2 1 34 34 H 1.08996 * 109.49306 * 174.86061 * 4 2 1 35 35 H 0.97002 * 120.00230 * 24.99635 * 7 5 4 36 36 H 0.96999 * 119.99995 * 179.97438 * 11 10 8 37 37 H 1.08993 * 109.50021 * 181.31715 * 16 5 4 38 38 H 1.08996 * 109.49590 * 301.41855 * 16 5 4 39 39 H 1.09000 * 109.50821 * 185.70637 * 17 16 5 40 40 H 1.09001 * 109.43350 * 65.42946 * 17 16 5 41 41 H 1.07996 * 120.86420 * 0.03650 * 22 21 19 42 42 H 1.07997 * 120.42982 * 180.27294 * 23 22 21 43 43 H 1.09001 * 115.54525 * 154.41691 * 26 25 24 44 44 H 1.09007 * 117.49938 * 0.02562 * 27 26 25 45 45 H 1.09000 * 117.50082 * 145.01975 * 27 26 25 46 46 H 1.08999 * 117.49956 * 214.98000 * 28 26 25 47 47 H 1.09004 * 117.49989 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 1.6414 -2.2056 -1.1674 6 1 0.5565 -2.2829 -1.0964 7 7 2.1022 -2.9008 -2.3716 8 6 1.4649 -4.0375 -2.7923 9 1 0.6227 -4.4216 -2.2359 10 6 1.9012 -4.6960 -3.9337 11 7 2.9279 -4.2281 -4.6115 12 14 1.0322 -6.2470 -4.5070 13 1 -0.0664 -5.8835 -5.4378 14 1 2.0018 -7.1281 -5.2060 15 1 0.4701 -6.9622 -3.3332 16 6 2.2800 -2.8464 0.0671 17 6 1.7740 -2.1404 1.3238 18 7 2.0225 -0.6980 1.1954 19 6 2.6945 -0.0290 2.1532 20 8 2.8902 1.1642 2.0371 21 6 3.1954 -0.7504 3.3501 22 6 4.2153 -0.2057 4.1313 23 6 4.6475 -0.9207 5.2391 24 7 4.0829 -2.0838 5.5153 25 6 3.1207 -2.5700 4.7557 26 6 2.5091 -3.9005 5.1119 27 6 2.8989 -4.5202 6.4553 28 6 3.4370 -5.1164 5.1521 29 7 2.6792 -1.9272 3.6959 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0276 -0.0050 33 1 1.6074 -0.2811 -2.1364 34 1 3.1296 -0.6515 -1.2908 35 1 2.8589 -2.5560 -2.8712 36 1 3.2331 -4.6885 -5.4089 37 1 2.0122 -3.9021 0.1086 38 1 3.3639 -2.7474 0.0087 39 1 2.3024 -2.5261 2.1957 40 1 0.7043 -2.3185 1.4340 41 1 4.6566 0.7474 3.8802 42 1 5.4317 -0.5298 5.8705 43 1 1.4887 -4.0574 4.7624 44 1 3.5975 -3.9654 7.0817 45 1 2.1351 -5.0852 6.9895 46 1 3.0268 -6.0733 4.8295 47 1 4.4897 -4.9540 4.9204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044758123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:25 Heat of formation + Delta-G solvation = 52.153890 kcal Electronic energy + Delta-G solvation = -28699.496441 eV Core-core repulsion = 24883.478983 eV Total energy + Delta-G solvation = -3816.017458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.62174 -41.15655 -39.08374 -37.91472 -36.34514 -35.33158 -33.75969 -33.26229 -32.81344 -31.08634 -28.68914 -27.02031 -26.18708 -25.86942 -24.35422 -23.81132 -23.19634 -22.63978 -21.45484 -19.97690 -19.32236 -18.89212 -18.41376 -17.50153 -16.83622 -16.75515 -16.67644 -16.55159 -15.79440 -15.63442 -15.50543 -15.36329 -15.16857 -14.94430 -14.83844 -14.43288 -14.03314 -13.90183 -13.40699 -13.11564 -12.95884 -12.87318 -12.76109 -12.49286 -12.37441 -12.20027 -12.16946 -12.07965 -12.01429 -11.89840 -11.79674 -11.62275 -11.54456 -11.35239 -11.14675 -10.92441 -10.38628 -10.03345 -9.77437 -8.98927 -7.92999 -5.21806 -0.65407 -0.21285 1.48089 1.49489 1.49557 1.57818 1.68634 2.40890 2.55468 2.58888 2.87560 3.09313 3.29202 3.40547 3.63547 3.71549 3.81333 3.88186 3.93918 4.05544 4.10342 4.13216 4.16853 4.23394 4.35284 4.45057 4.50420 4.52405 4.57460 4.66563 4.83456 4.83594 4.93134 4.97303 4.99608 5.03552 5.04762 5.17549 5.21798 5.26689 5.34042 5.36567 5.48904 5.52636 5.63522 5.71469 6.22382 6.28632 6.75552 6.91201 7.34509 8.09591 8.33367 9.30738 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.003488 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.070683 B = 8025.611990 C = 9697.633937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 H 0.096 0.904 4 C -0.122 4.122 5 C 0.175 3.825 6 H 0.054 0.946 7 N -0.738 5.738 8 C -0.235 4.235 9 H 0.078 0.922 10 C -0.076 4.076 11 N -0.972 5.972 12 Si 0.970 3.030 13 H -0.288 1.288 14 H -0.299 1.299 15 H -0.267 1.267 16 C -0.138 4.138 17 C 0.084 3.916 18 N -0.574 5.574 19 C 0.564 3.436 20 O -0.559 6.559 21 C 0.119 3.881 22 C -0.178 4.178 23 C 0.168 3.832 24 N -0.510 5.510 25 C 0.336 3.664 26 C -0.124 4.124 27 C -0.135 4.135 28 C -0.152 4.152 29 N -0.494 5.494 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.145 0.855 40 H 0.076 0.924 41 H 0.172 0.828 42 H 0.221 0.779 43 H 0.136 0.864 44 H 0.105 0.895 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 5.142 24.773 25.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.161 4.161 5 C 0.066 3.934 6 H 0.072 0.928 7 N -0.376 5.376 8 C -0.367 4.367 9 H 0.096 0.904 10 C -0.268 4.268 11 N -0.623 5.623 12 Si 0.800 3.200 13 H -0.215 1.215 14 H -0.225 1.225 15 H -0.192 1.192 16 C -0.179 4.179 17 C -0.038 4.038 18 N -0.304 5.304 19 C 0.351 3.649 20 O -0.438 6.438 21 C -0.027 4.027 22 C -0.201 4.201 23 C 0.000 4.000 24 N -0.224 5.224 25 C 0.070 3.930 26 C -0.144 4.144 27 C -0.173 4.173 28 C -0.191 4.191 29 N -0.211 5.211 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.161 0.839 40 H 0.094 0.906 41 H 0.190 0.810 42 H 0.238 0.762 43 H 0.154 0.846 44 H 0.124 0.876 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.460 4.786 24.880 25.340 hybrid contribution 0.482 0.159 -1.600 1.679 sum 0.022 4.945 23.280 23.800 Atomic orbital electron populations 1.22078 0.92966 1.02975 1.03021 1.21272 0.95597 0.96536 0.82730 0.88634 1.22071 1.00468 0.95968 0.97611 1.20439 0.96919 0.90119 0.85881 0.92768 1.42654 1.37494 1.29157 1.28345 1.19626 1.09773 1.01304 1.05994 0.90394 1.25535 0.99630 1.02799 0.98868 1.69825 1.29525 1.42927 1.20032 0.85181 0.77201 0.79469 0.78188 1.21507 1.22542 1.19183 1.22389 0.99491 1.00136 0.95856 1.22853 1.02799 0.77678 1.00500 1.48211 1.52300 1.10524 1.19384 1.18121 0.78173 0.86062 0.82577 1.90742 1.59310 1.14869 1.78891 1.21570 0.94607 0.91282 0.95214 1.23159 0.97018 1.03542 0.96344 1.24049 0.95630 0.87650 0.92654 1.68156 1.09446 1.14086 1.30734 1.22704 0.89095 0.95635 0.85531 1.20829 1.00609 0.87168 1.05827 1.23096 1.03477 1.01342 0.89361 1.23066 0.98484 0.95750 1.01761 1.68017 1.29751 1.07145 1.16203 0.91929 0.89974 0.91941 0.90384 0.93253 0.79910 0.94179 0.91860 0.94593 0.83872 0.90560 0.81024 0.76236 0.84616 0.87632 0.86096 0.86394 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.03 71.98 0.65 -3.15 16 2 C 0.14 4.14 3.21 44.98 0.14 4.29 16 3 H 0.10 2.86 7.00 -2.39 -0.02 2.84 16 4 C -0.12 -4.17 5.02 30.67 0.15 -4.02 16 5 C 0.17 6.82 2.53 45.02 0.11 6.94 16 6 H 0.05 2.10 6.43 -2.39 -0.02 2.09 16 7 N -0.74 -37.12 5.12 -322.83 -1.65 -38.78 16 8 C -0.24 -12.88 9.93 84.03 0.83 -12.05 16 9 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 10 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 11 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 12 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 13 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 14 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 C -0.14 -4.93 5.64 30.53 0.17 -4.76 16 17 C 0.08 2.44 5.60 86.22 0.48 2.92 16 18 N -0.57 -17.02 2.68 -798.53 -2.14 -19.16 16 19 C 0.56 16.96 7.65 86.97 0.67 17.63 16 20 O -0.56 -18.87 16.00 -3.62 -0.06 -18.93 16 21 C 0.12 3.04 6.52 42.00 0.27 3.31 16 22 C -0.18 -3.41 9.72 22.71 0.22 -3.19 16 23 C 0.17 2.48 11.31 84.76 0.96 3.43 16 24 N -0.51 -9.65 9.33 -187.89 -1.75 -11.40 16 25 C 0.34 7.23 7.31 138.79 1.01 8.24 16 26 C -0.12 -2.12 6.23 -11.54 -0.07 -2.20 16 27 C -0.14 -1.71 10.01 30.62 0.31 -1.40 16 28 C -0.15 -2.23 10.24 30.62 0.31 -1.92 16 29 N -0.49 -12.18 6.36 -177.07 -1.13 -13.31 16 30 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.62 5.74 -2.39 -0.01 1.60 16 33 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.37 20.32 7.80 -92.71 -0.72 19.59 16 36 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.15 4.05 3.92 -58.74 -0.23 3.82 16 40 H 0.08 2.07 7.52 -2.39 -0.02 2.05 16 41 H 0.17 2.80 7.86 -2.91 -0.02 2.77 16 42 H 0.22 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.11 1.43 7.54 -2.38 -0.02 1.42 16 45 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -69.79 378.28 2.33 -67.46 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.05 Total: 35.56 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 6.70 Total: 10.18 kcal Atomic # 7 Polarization: -135.73 SS G_CDS: -6.39 Total: -142.13 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.06 Total: -18.93 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -69.79 2.33 -67.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.612 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds