Wall clock time and date at job start Tue Mar 31 2020 17:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.58573 * 2 1 4 4 C 1.53195 * 109.58473 * 120.43617 * 2 1 3 5 5 C 1.53032 * 109.31068 * 174.43593 * 4 2 1 6 6 H 1.09000 * 109.46159 * 58.63358 * 5 4 2 7 7 N 1.46504 * 109.46056 * 178.60330 * 5 4 2 8 8 C 1.36933 * 120.00374 * 205.02678 * 7 5 4 9 9 H 1.07999 * 120.00239 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00299 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99816 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00401 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47275 * 89.99424 * 12 10 8 14 14 H 1.48504 * 109.46673 * 329.99825 * 12 10 8 15 15 H 1.48493 * 109.47328 * 210.00000 * 12 10 8 16 16 C 1.53044 * 109.52887 * 298.61651 * 5 4 2 17 17 C 1.53191 * 109.31092 * 61.37425 * 16 5 4 18 18 N 1.46919 * 108.77537 * 305.36511 * 17 16 5 19 19 C 1.34776 * 120.63025 * 233.58925 * 18 17 16 20 20 O 1.21554 * 120.00175 * 174.05048 * 19 18 17 21 21 C 1.47832 * 119.99966 * 354.04901 * 19 18 17 22 22 C 1.39945 * 120.93824 * 324.96660 * 21 19 18 23 23 N 1.32150 * 118.92621 * 179.71951 * 22 21 19 24 24 C 1.31875 * 120.96160 * 0.57059 * 23 22 21 25 25 C 1.50698 * 118.94986 * 179.67842 * 24 23 22 26 26 C 1.53004 * 117.49948 * 8.65007 * 25 24 23 27 27 C 1.52996 * 117.50224 * 300.02479 * 25 24 23 28 28 N 1.31868 * 122.09574 * 359.70680 * 24 23 22 29 29 C 1.32144 * 120.96741 * 359.97438 * 28 24 23 30 30 H 1.08998 * 109.47124 * 176.54744 * 1 2 3 31 31 H 1.09004 * 109.47294 * 296.55259 * 1 2 3 32 32 H 1.09004 * 109.46966 * 56.54654 * 1 2 3 33 33 H 1.09009 * 109.50416 * 54.48060 * 4 2 1 34 34 H 1.08995 * 109.49044 * 294.38507 * 4 2 1 35 35 H 0.97004 * 119.99662 * 25.03231 * 7 5 4 36 36 H 0.96998 * 120.00191 * 0.02562 * 11 10 8 37 37 H 1.09005 * 109.49505 * 181.32784 * 16 5 4 38 38 H 1.09003 * 109.49622 * 301.42104 * 16 5 4 39 39 H 1.09001 * 109.58772 * 65.15754 * 17 16 5 40 40 H 1.09002 * 109.58399 * 185.57778 * 17 16 5 41 41 H 1.08001 * 120.53855 * 359.97438 * 22 21 19 42 42 H 1.09003 * 115.55308 * 154.34989 * 25 24 23 43 43 H 1.08998 * 117.49535 * 359.97438 * 26 25 24 44 44 H 1.08994 * 117.49708 * 145.01783 * 26 25 24 45 45 H 1.09002 * 117.49956 * 214.97897 * 27 25 24 46 46 H 1.08997 * 117.49634 * 359.97438 * 27 25 24 47 47 H 1.08000 * 120.53627 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7312 1.2444 5 6 3.5674 -0.8493 1.1691 6 1 4.0058 0.1462 1.0995 7 7 4.0651 -1.5186 2.3736 8 6 5.3493 -1.3015 2.7964 9 1 5.9955 -0.6372 2.2418 10 6 5.8211 -1.9360 3.9373 11 7 5.0338 -2.7460 4.6130 12 14 7.5727 -1.6393 4.5145 13 1 7.5975 -0.4844 5.4477 14 1 8.4372 -1.3476 3.3428 15 1 8.0759 -2.8500 5.2118 16 6 3.9568 -1.6656 -0.0655 17 6 3.4650 -0.9452 -1.3248 18 7 2.0226 -0.6980 -1.1953 19 6 1.1675 -1.1035 -2.1549 20 8 -0.0312 -0.9908 -1.9880 21 6 1.6875 -1.6853 -3.4106 22 6 2.8798 -1.2223 -3.9784 23 7 3.3109 -1.7747 -5.0988 24 6 2.6296 -2.7393 -5.6856 25 6 3.1594 -3.3320 -6.9658 26 6 4.5650 -2.9190 -7.4069 27 6 3.3413 -2.3905 -8.1580 28 7 1.4992 -3.2015 -5.1880 29 6 0.9984 -2.7108 -4.0679 30 1 -0.3633 -1.0258 -0.0619 31 1 -0.3634 0.4594 0.9193 32 1 -0.3633 0.5665 -0.8574 33 1 1.6031 -1.7273 1.2889 34 1 1.7657 -0.1699 2.1365 35 1 3.4849 -2.1156 2.8715 36 1 4.1242 -2.8998 4.3136 37 1 5.0412 -1.7694 -0.1057 38 1 3.4982 -2.6528 -0.0084 39 1 3.9904 0.0038 -1.4317 40 1 3.6518 -1.5690 -2.1990 41 1 3.4407 -0.4292 -3.5064 42 1 2.8461 -4.3548 -7.1755 43 1 5.1064 -2.2182 -6.7713 44 1 5.1767 -3.6700 -7.9067 45 1 3.1479 -2.7940 -9.1520 46 1 3.0773 -1.3425 -8.0165 47 1 0.0719 -3.0942 -3.6668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044769464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:34 Heat of formation + Delta-G solvation = 76.445318 kcal Electronic energy + Delta-G solvation = -28351.974238 eV Core-core repulsion = 24537.010136 eV Total energy + Delta-G solvation = -3814.964103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77582 -40.30143 -37.69171 -37.31033 -34.97045 -34.22839 -33.44460 -32.16926 -31.45593 -29.17923 -27.20457 -26.10844 -25.14274 -24.17283 -23.11316 -22.71300 -22.41324 -21.55463 -20.49959 -19.54436 -18.24240 -17.43425 -17.27589 -17.03842 -16.11367 -15.68862 -15.50928 -15.05839 -14.72878 -14.59725 -14.54939 -14.11774 -13.89926 -13.68162 -13.54046 -13.34293 -12.86646 -12.60704 -12.33110 -12.18637 -11.91446 -11.82550 -11.65308 -11.59013 -11.22485 -11.15382 -10.94365 -10.88725 -10.86321 -10.64385 -10.48281 -10.18041 -10.05779 -9.64600 -9.62257 -9.29410 -9.17535 -8.97220 -8.61817 -7.11638 -6.16015 -3.17009 0.15020 0.69208 2.48032 2.75307 3.17369 3.34761 3.47512 3.52042 3.59899 3.66057 3.80301 4.10699 4.21606 4.46612 4.56366 4.59922 4.61942 4.63873 4.81937 4.96684 4.99380 5.10471 5.15466 5.27554 5.30936 5.36595 5.39548 5.44945 5.55463 5.63510 5.69293 5.74161 5.84189 5.86357 5.92343 5.97093 6.05002 6.17849 6.26774 6.29793 6.35554 6.51741 6.59670 6.72357 6.87172 7.26953 7.67058 7.74039 7.97005 8.69486 9.15507 10.02041 10.16771 11.32189 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.002946 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.492495 B = 9500.757939 C =11095.917857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.137 4.137 5 C 0.185 3.815 6 H 0.050 0.950 7 N -0.735 5.735 8 C -0.333 4.333 9 H 0.065 0.935 10 C -0.044 4.044 11 N -0.943 5.943 12 Si 1.082 2.918 13 H -0.295 1.295 14 H -0.294 1.294 15 H -0.288 1.288 16 C -0.150 4.150 17 C 0.095 3.905 18 N -0.594 5.594 19 C 0.569 3.431 20 O -0.526 6.526 21 C -0.244 4.244 22 C 0.184 3.816 23 N -0.519 5.519 24 C 0.364 3.636 25 C -0.108 4.108 26 C -0.151 4.151 27 C -0.154 4.154 28 N -0.517 5.517 29 C 0.207 3.793 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.367 0.633 36 H 0.256 0.744 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.180 0.820 42 H 0.132 0.868 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 3.241 -22.824 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.093 0.907 4 C -0.176 4.176 5 C 0.074 3.926 6 H 0.068 0.932 7 N -0.376 5.376 8 C -0.464 4.464 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.588 5.588 12 Si 0.913 3.087 13 H -0.223 1.223 14 H -0.221 1.221 15 H -0.214 1.214 16 C -0.191 4.191 17 C -0.028 4.028 18 N -0.326 5.326 19 C 0.355 3.645 20 O -0.405 6.405 21 C -0.252 4.252 22 C 0.017 3.983 23 N -0.232 5.232 24 C 0.099 3.901 25 C -0.128 4.128 26 C -0.189 4.189 27 C -0.192 4.192 28 N -0.229 5.229 29 C 0.041 3.959 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.200 0.800 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.196 0.804 42 H 0.149 0.851 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.115 0.885 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.548 2.663 -22.467 23.077 hybrid contribution -1.509 0.481 -0.114 1.588 sum -6.058 3.145 -22.581 23.590 Atomic orbital electron populations 1.22223 0.92578 1.03787 1.00721 1.21375 0.95623 0.95042 0.83343 0.90662 1.22326 0.97569 1.00993 0.96681 1.20097 0.90750 0.95000 0.86730 0.93200 1.42441 1.13116 1.54659 1.27419 1.20043 0.89573 1.26350 1.10423 0.91691 1.25779 1.06280 0.97479 0.94663 1.70850 1.08193 1.38286 1.41472 0.83209 0.74165 0.75979 0.75386 1.22274 1.22124 1.21389 1.22672 1.01938 0.99920 0.94573 1.22295 0.79514 1.00771 1.00228 1.48117 1.07618 1.56862 1.20022 1.17814 0.86090 0.78176 0.82406 1.90859 1.14866 1.55465 1.79269 1.21873 0.99777 1.03226 1.00297 1.23750 0.90264 0.95228 0.89071 1.68192 1.33993 1.11070 1.09963 1.22378 0.86329 0.87519 0.93900 1.20701 1.01873 1.00128 0.90113 1.23060 0.89704 1.03586 1.02521 1.22998 1.02178 0.99047 0.94954 1.68248 1.13075 1.29254 1.12357 1.23407 0.96934 0.88114 0.87478 0.91014 0.93571 0.91298 0.91790 0.90473 0.79998 0.93311 0.90352 0.92302 0.90700 0.90215 0.80354 0.85058 0.86980 0.87941 0.87748 0.88505 0.80412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 7.59 37.16 0.28 -1.52 16 2 C 0.15 1.99 3.49 -67.60 -0.24 1.76 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -2.16 4.84 -26.61 -0.13 -2.29 16 5 C 0.18 3.41 2.73 -67.89 -0.19 3.22 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 N -0.73 -17.61 5.12 -53.39 -0.27 -17.89 16 8 C -0.33 -9.00 9.93 -15.06 -0.15 -9.15 16 9 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 10 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 11 N -0.94 -28.76 13.70 55.49 0.76 -28.00 16 12 Si 1.08 25.43 29.92 -169.99 -5.09 20.34 16 13 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 17 C 0.10 1.16 4.82 -3.72 -0.02 1.14 16 18 N -0.59 -7.65 2.97 -166.34 -0.49 -8.15 16 19 C 0.57 7.54 7.34 -12.34 -0.09 7.45 16 20 O -0.53 -8.00 12.29 5.32 0.07 -7.94 16 21 C -0.24 -2.88 5.31 -104.69 -0.56 -3.43 16 22 C 0.18 1.96 8.67 -16.78 -0.15 1.82 16 23 N -0.52 -5.83 9.32 -10.39 -0.10 -5.92 16 24 C 0.36 4.12 7.31 -157.06 -1.15 2.98 16 25 C -0.11 -0.94 6.23 -91.77 -0.57 -1.51 16 26 C -0.15 -1.08 10.01 -26.73 -0.27 -1.34 16 27 C -0.15 -1.06 10.23 -26.73 -0.27 -1.33 16 28 N -0.52 -6.22 10.31 -10.40 -0.11 -6.33 16 29 C 0.21 2.41 10.92 -16.78 -0.18 2.23 16 30 H 0.07 1.06 6.75 -51.93 -0.35 0.71 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.95 6.75 -51.93 -0.35 0.60 16 33 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.37 9.24 6.63 -40.82 -0.27 8.97 16 36 H 0.26 7.68 6.77 -40.82 -0.28 7.41 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 40 H 0.08 0.89 4.46 -51.93 -0.23 0.65 16 41 H 0.18 1.55 6.13 -52.49 -0.32 1.22 16 42 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.11 0.92 7.53 -51.93 -0.39 0.52 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.18 1.81 8.05 -52.49 -0.42 1.39 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -32.22 374.00 -10.40 -42.62 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.89 Total: 9.56 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.92 Total: -3.92 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -0.21 Total: -66.29 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.07 Total: -7.94 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.09 Total: 20.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.22 -10.40 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044769464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.063 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds