Wall clock time and date at job start Tue Mar 31 2020 17:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.58573 * 2 1 4 4 C 1.53195 * 109.58473 * 120.43617 * 2 1 3 5 5 C 1.53032 * 109.31068 * 174.43593 * 4 2 1 6 6 H 1.09000 * 109.46159 * 58.63358 * 5 4 2 7 7 N 1.46504 * 109.46056 * 178.60330 * 5 4 2 8 8 C 1.36933 * 120.00374 * 205.02678 * 7 5 4 9 9 H 1.07999 * 120.00239 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00299 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99816 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00401 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47275 * 89.99424 * 12 10 8 14 14 H 1.48504 * 109.46673 * 329.99825 * 12 10 8 15 15 H 1.48493 * 109.47328 * 210.00000 * 12 10 8 16 16 C 1.53044 * 109.52887 * 298.61651 * 5 4 2 17 17 C 1.53191 * 109.31092 * 61.37425 * 16 5 4 18 18 N 1.46919 * 108.77537 * 305.36511 * 17 16 5 19 19 C 1.34776 * 120.63025 * 233.58925 * 18 17 16 20 20 O 1.21554 * 120.00175 * 174.05048 * 19 18 17 21 21 C 1.47832 * 119.99966 * 354.04901 * 19 18 17 22 22 C 1.39945 * 120.93824 * 324.96660 * 21 19 18 23 23 N 1.32150 * 118.92621 * 179.71951 * 22 21 19 24 24 C 1.31875 * 120.96160 * 0.57059 * 23 22 21 25 25 C 1.50698 * 118.94986 * 179.67842 * 24 23 22 26 26 C 1.53004 * 117.49948 * 8.65007 * 25 24 23 27 27 C 1.52996 * 117.50224 * 300.02479 * 25 24 23 28 28 N 1.31868 * 122.09574 * 359.70680 * 24 23 22 29 29 C 1.32144 * 120.96741 * 359.97438 * 28 24 23 30 30 H 1.08998 * 109.47124 * 176.54744 * 1 2 3 31 31 H 1.09004 * 109.47294 * 296.55259 * 1 2 3 32 32 H 1.09004 * 109.46966 * 56.54654 * 1 2 3 33 33 H 1.09009 * 109.50416 * 54.48060 * 4 2 1 34 34 H 1.08995 * 109.49044 * 294.38507 * 4 2 1 35 35 H 0.97004 * 119.99662 * 25.03231 * 7 5 4 36 36 H 0.96998 * 120.00191 * 0.02562 * 11 10 8 37 37 H 1.09005 * 109.49505 * 181.32784 * 16 5 4 38 38 H 1.09003 * 109.49622 * 301.42104 * 16 5 4 39 39 H 1.09001 * 109.58772 * 65.15754 * 17 16 5 40 40 H 1.09002 * 109.58399 * 185.57778 * 17 16 5 41 41 H 1.08001 * 120.53855 * 359.97438 * 22 21 19 42 42 H 1.09003 * 115.55308 * 154.34989 * 25 24 23 43 43 H 1.08998 * 117.49535 * 359.97438 * 26 25 24 44 44 H 1.08994 * 117.49708 * 145.01783 * 26 25 24 45 45 H 1.09002 * 117.49956 * 214.97897 * 27 25 24 46 46 H 1.08997 * 117.49634 * 359.97438 * 27 25 24 47 47 H 1.08000 * 120.53627 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7312 1.2444 5 6 3.5674 -0.8493 1.1691 6 1 4.0058 0.1462 1.0995 7 7 4.0651 -1.5186 2.3736 8 6 5.3493 -1.3015 2.7964 9 1 5.9955 -0.6372 2.2418 10 6 5.8211 -1.9360 3.9373 11 7 5.0338 -2.7460 4.6130 12 14 7.5727 -1.6393 4.5145 13 1 7.5975 -0.4844 5.4477 14 1 8.4372 -1.3476 3.3428 15 1 8.0759 -2.8500 5.2118 16 6 3.9568 -1.6656 -0.0655 17 6 3.4650 -0.9452 -1.3248 18 7 2.0226 -0.6980 -1.1953 19 6 1.1675 -1.1035 -2.1549 20 8 -0.0312 -0.9908 -1.9880 21 6 1.6875 -1.6853 -3.4106 22 6 2.8798 -1.2223 -3.9784 23 7 3.3109 -1.7747 -5.0988 24 6 2.6296 -2.7393 -5.6856 25 6 3.1594 -3.3320 -6.9658 26 6 4.5650 -2.9190 -7.4069 27 6 3.3413 -2.3905 -8.1580 28 7 1.4992 -3.2015 -5.1880 29 6 0.9984 -2.7108 -4.0679 30 1 -0.3633 -1.0258 -0.0619 31 1 -0.3634 0.4594 0.9193 32 1 -0.3633 0.5665 -0.8574 33 1 1.6031 -1.7273 1.2889 34 1 1.7657 -0.1699 2.1365 35 1 3.4849 -2.1156 2.8715 36 1 4.1242 -2.8998 4.3136 37 1 5.0412 -1.7694 -0.1057 38 1 3.4982 -2.6528 -0.0084 39 1 3.9904 0.0038 -1.4317 40 1 3.6518 -1.5690 -2.1990 41 1 3.4407 -0.4292 -3.5064 42 1 2.8461 -4.3548 -7.1755 43 1 5.1064 -2.2182 -6.7713 44 1 5.1767 -3.6700 -7.9067 45 1 3.1479 -2.7940 -9.1520 46 1 3.0773 -1.3425 -8.0165 47 1 0.0719 -3.0942 -3.6668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044769464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:32 Heat of formation + Delta-G solvation = 57.172415 kcal Electronic energy + Delta-G solvation = -28352.809974 eV Core-core repulsion = 24537.010136 eV Total energy + Delta-G solvation = -3815.799838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.68130 -41.34614 -38.92781 -38.00209 -36.56155 -35.23406 -34.44995 -33.84406 -32.45034 -30.82599 -28.50625 -26.98113 -26.06323 -25.82991 -24.61827 -23.46620 -23.23269 -22.44384 -21.80713 -20.70673 -19.36735 -19.11637 -18.17812 -18.00554 -17.23846 -16.81023 -16.57641 -16.28753 -15.95634 -15.69943 -15.60011 -15.43092 -15.11532 -14.92009 -14.76178 -14.71847 -14.04429 -13.55235 -13.41459 -13.29400 -13.20494 -12.88627 -12.67350 -12.59068 -12.44576 -12.33540 -12.17301 -12.12122 -11.95721 -11.88758 -11.83102 -11.64588 -11.42680 -11.20145 -10.91020 -10.49658 -10.49272 -10.24843 -9.74779 -9.13037 -8.37628 -5.32405 -0.72606 -0.16883 1.46313 1.59041 1.69372 1.73191 1.82839 2.38480 2.59374 2.71689 2.81825 3.09740 3.18731 3.31602 3.40850 3.57421 3.65827 3.77686 3.84853 3.88512 3.91631 3.96692 4.07089 4.11008 4.21834 4.30013 4.43069 4.50928 4.55315 4.56996 4.59618 4.76460 4.78539 4.87838 4.91099 4.93283 5.06674 5.08211 5.16037 5.17012 5.30966 5.32379 5.38871 5.57937 5.61874 5.66407 6.21108 6.49702 6.81615 6.92052 7.09232 7.98990 8.12047 9.14171 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.002946 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.492495 B = 9500.757939 C =11095.917857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.154 3.846 3 H 0.097 0.903 4 C -0.125 4.125 5 C 0.179 3.821 6 H 0.053 0.947 7 N -0.750 5.750 8 C -0.323 4.323 9 H 0.072 0.928 10 C -0.109 4.109 11 N -0.980 5.980 12 Si 1.128 2.872 13 H -0.286 1.286 14 H -0.269 1.269 15 H -0.298 1.298 16 C -0.140 4.140 17 C 0.106 3.894 18 N -0.594 5.594 19 C 0.572 3.428 20 O -0.548 6.548 21 C -0.254 4.254 22 C 0.188 3.812 23 N -0.524 5.524 24 C 0.357 3.643 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.142 4.142 28 N -0.532 5.532 29 C 0.202 3.798 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.356 0.644 36 H 0.243 0.757 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.202 0.798 42 H 0.139 0.861 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 4.579 -25.099 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.115 0.885 4 C -0.164 4.164 5 C 0.071 3.929 6 H 0.071 0.929 7 N -0.391 5.391 8 C -0.454 4.454 9 H 0.090 0.910 10 C -0.299 4.299 11 N -0.629 5.629 12 Si 0.953 3.047 13 H -0.213 1.213 14 H -0.194 1.194 15 H -0.225 1.225 16 C -0.181 4.181 17 C -0.017 4.017 18 N -0.326 5.326 19 C 0.360 3.640 20 O -0.428 6.428 21 C -0.262 4.262 22 C 0.022 3.978 23 N -0.238 5.238 24 C 0.092 3.908 25 C -0.149 4.149 26 C -0.181 4.181 27 C -0.180 4.180 28 N -0.245 5.245 29 C 0.036 3.964 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.187 0.813 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.218 0.782 42 H 0.157 0.843 43 H 0.120 0.880 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.107 0.893 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.491 4.032 -24.810 25.376 hybrid contribution -1.900 0.069 0.500 1.966 sum -5.391 4.102 -24.309 25.235 Atomic orbital electron populations 1.22089 0.92347 1.02638 1.01236 1.21342 0.95685 0.95597 0.82231 0.88534 1.22182 0.95589 1.00541 0.98127 1.20362 0.92293 0.94751 0.85543 0.92857 1.42701 1.12283 1.54974 1.29176 1.20394 0.90643 1.24740 1.09613 0.91010 1.27157 1.09436 0.97706 0.95644 1.70966 1.08125 1.40841 1.42937 0.82616 0.70572 0.75612 0.75893 1.21275 1.19433 1.22475 1.22444 1.01033 0.99033 0.95574 1.22287 0.79119 1.01989 0.98300 1.48114 1.07872 1.56772 1.19824 1.17949 0.85742 0.77592 0.82737 1.90854 1.15822 1.56233 1.79848 1.21736 1.00615 1.03867 0.99967 1.24097 0.89776 0.95174 0.88776 1.68295 1.34007 1.11309 1.10187 1.22949 0.86024 0.87260 0.94551 1.20889 1.03291 1.00844 0.89828 1.23118 0.89247 1.03632 1.02093 1.23080 1.01407 0.98272 0.95228 1.68314 1.13699 1.29820 1.12644 1.23598 0.97219 0.88111 0.87472 0.92927 0.92429 0.91404 0.93310 0.90847 0.81256 0.94672 0.91578 0.94260 0.87734 0.88709 0.78154 0.84350 0.88047 0.85965 0.85566 0.89331 0.79756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 7.59 71.98 0.55 -2.65 16 2 C 0.15 3.86 3.49 44.98 0.16 4.02 16 3 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.13 -3.90 4.84 30.67 0.15 -3.75 16 5 C 0.18 6.47 2.73 45.02 0.12 6.60 16 6 H 0.05 1.91 8.08 -2.39 -0.02 1.90 16 7 N -0.75 -36.36 5.12 -322.82 -1.65 -38.01 16 8 C -0.32 -17.38 9.93 84.03 0.83 -16.55 16 9 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 10 C -0.11 -6.20 5.50 84.86 0.47 -5.73 16 11 N -0.98 -61.20 13.70 21.65 0.30 -60.90 16 12 Si 1.13 51.01 29.92 68.60 2.05 53.06 16 13 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 15 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 16 C -0.14 -4.41 5.66 30.67 0.17 -4.24 16 17 C 0.11 2.31 4.82 86.36 0.42 2.72 16 18 N -0.59 -14.18 2.97 -798.45 -2.37 -16.55 16 19 C 0.57 14.40 7.34 86.78 0.64 15.04 16 20 O -0.55 -16.25 12.29 -3.89 -0.05 -16.30 16 21 C -0.25 -5.64 5.31 -19.91 -0.11 -5.75 16 22 C 0.19 3.62 8.67 85.06 0.74 4.36 16 23 N -0.52 -10.86 9.32 -186.80 -1.74 -12.60 16 24 C 0.36 7.63 7.31 138.70 1.01 8.64 16 25 C -0.13 -2.01 6.23 -11.54 -0.07 -2.08 16 26 C -0.14 -1.73 10.01 30.60 0.31 -1.42 16 27 C -0.14 -1.63 10.23 30.59 0.31 -1.32 16 28 N -0.53 -12.38 10.31 -186.80 -1.93 -14.31 16 29 C 0.20 4.58 10.92 85.06 0.93 5.51 16 30 H 0.05 1.54 6.75 -2.39 -0.02 1.53 16 31 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.07 1.76 6.75 -2.39 -0.02 1.75 16 33 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.36 18.55 6.63 -92.71 -0.61 17.94 16 36 H 0.24 15.17 6.77 -92.71 -0.63 14.54 16 37 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.76 8.07 -2.39 -0.02 1.74 16 40 H 0.10 1.85 4.46 -2.39 -0.01 1.84 16 41 H 0.20 2.80 6.13 -2.91 -0.02 2.79 16 42 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.10 1.47 7.53 -2.39 -0.02 1.45 16 44 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.19 3.73 8.05 -2.91 -0.02 3.71 16 Total: -1.00 -70.37 374.00 1.75 -68.61 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.52 Total: 33.61 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 6.62 Total: 3.39 kcal Atomic # 7 Polarization: -134.98 SS G_CDS: -7.40 Total: -142.38 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.05 Total: -16.30 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Total: -70.37 1.75 -68.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044769464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.787 kcal (2) G-P(sol) polarization free energy of solvation -70.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds