Wall clock time and date at job start Tue Mar 31 2020 17:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.58947 * 2 1 4 4 C 1.53188 * 109.58710 * 239.71142 * 2 1 3 5 5 C 1.53035 * 109.31339 * 294.84924 * 4 2 1 6 6 H 1.09000 * 109.46376 * 58.64518 * 5 4 2 7 7 N 1.46503 * 109.46019 * 178.61418 * 5 4 2 8 8 C 1.36943 * 120.00113 * 205.02701 * 7 5 4 9 9 H 1.07994 * 119.99885 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99572 * 179.97438 * 8 7 5 11 11 N 1.31610 * 120.00434 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99429 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47357 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47334 * 240.00220 * 12 10 8 15 15 H 1.48500 * 109.46754 * 120.00340 * 12 10 8 16 16 C 1.53039 * 109.52784 * 298.62717 * 5 4 2 17 17 C 1.53193 * 109.31157 * 61.38883 * 16 5 4 18 18 N 1.46924 * 108.76222 * 305.34371 * 17 16 5 19 19 C 1.34783 * 120.62838 * 233.59250 * 18 17 16 20 20 O 1.21551 * 119.99829 * 174.20186 * 19 18 17 21 21 C 1.47828 * 120.00094 * 354.20674 * 19 18 17 22 22 C 1.39946 * 120.93998 * 319.99761 * 21 19 18 23 23 N 1.32150 * 118.92646 * 179.71666 * 22 21 19 24 24 C 1.31868 * 120.96368 * 0.56567 * 23 22 21 25 25 C 1.50703 * 118.95317 * 179.67730 * 24 23 22 26 26 C 1.53006 * 117.49419 * 8.77225 * 25 24 23 27 27 C 1.52998 * 117.49765 * 300.11254 * 25 24 23 28 28 N 1.31867 * 122.09728 * 359.70751 * 24 23 22 29 29 C 1.32149 * 120.96938 * 359.97438 * 28 24 23 30 30 H 1.09000 * 109.47232 * 180.28643 * 1 2 3 31 31 H 1.08996 * 109.47005 * 300.28777 * 1 2 3 32 32 H 1.09007 * 109.46605 * 60.28909 * 1 2 3 33 33 H 1.09006 * 109.49504 * 174.89875 * 4 2 1 34 34 H 1.09001 * 109.52651 * 54.82110 * 4 2 1 35 35 H 0.97000 * 119.99579 * 25.03003 * 7 5 4 36 36 H 0.97006 * 120.00159 * 359.97438 * 11 10 8 37 37 H 1.09004 * 109.49698 * 181.31998 * 16 5 4 38 38 H 1.08993 * 109.50206 * 301.41654 * 16 5 4 39 39 H 1.09000 * 109.58247 * 185.56208 * 17 16 5 40 40 H 1.08999 * 109.59992 * 65.13147 * 17 16 5 41 41 H 1.08008 * 120.53574 * 359.97438 * 22 21 19 42 42 H 1.08999 * 115.54935 * 154.43861 * 25 24 23 43 43 H 1.08998 * 117.50149 * 0.02562 * 26 25 24 44 44 H 1.09001 * 117.49306 * 145.02012 * 26 25 24 45 45 H 1.09000 * 117.49656 * 214.97132 * 27 25 24 46 46 H 1.08997 * 117.50016 * 0.02562 * 27 25 24 47 47 H 1.07994 * 120.54235 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 1.6415 -2.2026 -1.1727 6 1 0.5565 -2.2802 -1.1018 7 7 2.1024 -2.8949 -2.3788 8 6 1.4647 -4.0303 -2.8025 9 1 0.6217 -4.4151 -2.2479 10 6 1.9011 -4.6859 -3.9457 11 7 2.9281 -4.2166 -4.6219 12 14 1.0308 -6.2342 -4.5241 13 1 -0.0851 -6.5506 -3.5967 14 1 1.9933 -7.3648 -4.5449 15 1 0.4918 -6.0178 -5.8908 16 6 2.2803 -2.8462 0.0601 17 6 1.7691 -2.1426 1.3212 18 7 2.0225 -0.7010 1.1937 19 6 2.6935 -0.0342 2.1537 20 8 2.9890 1.1334 1.9894 21 6 3.0703 -0.7228 3.4064 22 6 2.1913 -1.6164 4.0287 23 7 2.5712 -2.2143 5.1443 24 6 3.7531 -1.9706 5.6760 25 6 4.1370 -2.6722 6.9533 26 6 3.2136 -3.7852 7.4530 27 6 3.2536 -2.4389 8.1805 28 7 4.6095 -1.1322 5.1260 29 6 4.3141 -0.4955 4.0063 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8874 32 1 -0.3633 0.5094 -0.8926 33 1 3.1298 -0.6488 -1.2920 34 1 1.6081 -0.2760 -2.1374 35 1 2.8593 -2.5490 -2.8771 36 1 3.3798 -3.4123 -4.3217 37 1 2.0127 -3.9022 0.0992 38 1 3.3641 -2.7471 0.0019 39 1 2.2943 -2.5302 2.1942 40 1 0.6986 -2.3173 1.4289 41 1 1.2197 -1.8173 3.6018 42 1 5.2074 -2.7938 7.1194 43 1 2.3287 -4.0102 6.8577 44 1 3.6765 -4.6387 7.9482 45 1 3.7428 -2.4075 9.1540 46 1 2.3945 -1.7783 8.0639 47 1 5.0206 0.1900 3.5621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044769465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:36 Heat of formation + Delta-G solvation = 38.792633 kcal Electronic energy + Delta-G solvation = -28338.244240 eV Core-core repulsion = 24521.647395 eV Total energy + Delta-G solvation = -3816.596846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.64977 -41.26363 -39.11450 -37.97498 -36.61004 -35.18179 -34.31737 -33.66371 -32.50557 -30.87946 -28.64445 -27.11807 -26.01637 -25.76218 -24.58538 -23.60905 -23.23959 -22.64142 -21.91279 -19.99312 -19.30678 -19.27452 -18.41954 -18.00136 -17.50317 -16.56462 -16.40404 -16.30159 -16.06730 -15.73154 -15.50938 -15.32168 -15.17760 -14.96114 -14.79316 -14.57541 -14.12540 -13.89963 -13.45002 -13.29835 -13.01458 -12.84144 -12.74768 -12.61502 -12.38407 -12.36341 -12.20945 -12.11111 -11.98178 -11.89172 -11.83950 -11.52662 -11.42970 -11.12716 -11.06467 -10.89342 -10.52613 -10.40708 -9.84941 -9.12174 -8.36927 -5.31632 -0.72951 -0.18128 1.39710 1.59205 1.69799 1.70559 1.81108 2.35821 2.58363 2.71870 2.80813 3.08947 3.16085 3.29538 3.41549 3.58777 3.67923 3.77541 3.84559 3.86030 3.90966 3.96521 4.07000 4.12980 4.19653 4.30296 4.43071 4.45426 4.51255 4.55755 4.62885 4.69397 4.78731 4.90669 4.91776 4.95330 4.96808 5.06166 5.16116 5.17426 5.24269 5.31136 5.40589 5.49683 5.63099 5.65072 6.16450 6.50332 6.80215 6.84119 7.09976 7.99698 8.12912 9.14944 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.002892 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.670258 B = 9680.312763 C =10922.342124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.148 3.852 3 H 0.094 0.906 4 C -0.125 4.125 5 C 0.181 3.819 6 H 0.059 0.941 7 N -0.751 5.751 8 C -0.320 4.320 9 H 0.072 0.928 10 C -0.109 4.109 11 N -0.981 5.981 12 Si 1.129 2.871 13 H -0.267 1.267 14 H -0.295 1.295 15 H -0.294 1.294 16 C -0.141 4.141 17 C 0.109 3.891 18 N -0.590 5.590 19 C 0.575 3.425 20 O -0.566 6.566 21 C -0.252 4.252 22 C 0.194 3.806 23 N -0.522 5.522 24 C 0.357 3.643 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.142 4.142 28 N -0.530 5.530 29 C 0.201 3.799 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.355 0.645 36 H 0.243 0.757 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.201 0.799 42 H 0.139 0.861 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.633 5.140 25.127 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.112 0.888 4 C -0.164 4.164 5 C 0.073 3.927 6 H 0.077 0.923 7 N -0.392 5.392 8 C -0.452 4.452 9 H 0.090 0.910 10 C -0.300 4.300 11 N -0.629 5.629 12 Si 0.955 3.045 13 H -0.191 1.191 14 H -0.223 1.223 15 H -0.221 1.221 16 C -0.182 4.182 17 C -0.014 4.014 18 N -0.321 5.321 19 C 0.363 3.637 20 O -0.446 6.446 21 C -0.259 4.259 22 C 0.027 3.973 23 N -0.236 5.236 24 C 0.093 3.907 25 C -0.149 4.149 26 C -0.180 4.180 27 C -0.180 4.180 28 N -0.243 5.243 29 C 0.035 3.965 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.187 0.813 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.218 0.782 42 H 0.157 0.843 43 H 0.120 0.880 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.107 0.893 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.465 4.013 24.838 25.397 hybrid contribution 0.666 1.897 -0.532 2.080 sum -2.799 5.910 24.306 25.170 Atomic orbital electron populations 1.22114 0.92597 1.03271 1.03304 1.21164 0.95613 0.96364 0.82320 0.88797 1.22107 1.00396 0.95958 0.97983 1.20370 0.97133 0.89881 0.85352 0.92297 1.42720 1.37426 1.29984 1.29022 1.20410 1.12090 1.03296 1.09359 0.90991 1.27132 0.99868 1.07330 0.95655 1.70934 1.24143 1.24925 1.42948 0.82588 0.74464 0.71859 0.75594 1.19109 1.22269 1.22148 1.22455 0.99807 1.00293 0.95653 1.22145 1.02774 0.78225 0.98217 1.48161 1.54303 1.09743 1.19902 1.17966 0.77219 0.85650 0.82895 1.90772 1.55690 1.17635 1.80498 1.21603 1.00007 1.04576 0.99746 1.23977 0.99341 0.85699 0.88290 1.68291 1.18059 1.25604 1.11633 1.22958 0.84887 0.88379 0.94509 1.20893 0.99787 1.04886 0.89292 1.23133 1.00695 0.92338 1.01871 1.23096 1.00221 0.99870 0.94816 1.68316 1.35404 1.09574 1.11054 1.23588 0.93240 0.91661 0.88058 0.91482 0.91224 0.90406 0.93459 0.90707 0.81318 0.94639 0.91564 0.94288 0.89051 0.87908 0.78244 0.84350 0.87995 0.85961 0.85569 0.89317 0.79877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 9.02 71.98 0.65 -2.54 16 2 C 0.15 3.78 3.21 44.97 0.14 3.92 16 3 H 0.09 2.56 7.00 -2.39 -0.02 2.54 16 4 C -0.13 -3.93 5.02 30.67 0.15 -3.77 16 5 C 0.18 6.49 2.52 45.02 0.11 6.60 16 6 H 0.06 2.08 6.44 -2.39 -0.02 2.07 16 7 N -0.75 -36.17 5.12 -322.81 -1.65 -37.82 16 8 C -0.32 -17.15 9.93 84.03 0.83 -16.32 16 9 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 10 C -0.11 -6.20 5.50 84.86 0.47 -5.73 16 11 N -0.98 -61.11 13.70 21.65 0.30 -60.81 16 12 Si 1.13 51.01 29.92 68.60 2.05 53.06 16 13 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 14 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 15 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 16 C -0.14 -4.47 5.66 30.67 0.17 -4.29 16 17 C 0.11 2.41 4.52 86.36 0.39 2.80 16 18 N -0.59 -14.36 2.68 -798.43 -2.14 -16.50 16 19 C 0.58 15.09 7.37 86.78 0.64 15.73 16 20 O -0.57 -18.34 16.37 -3.87 -0.06 -18.40 16 21 C -0.25 -5.70 5.14 -19.91 -0.10 -5.80 16 22 C 0.19 3.71 8.69 85.06 0.74 4.45 16 23 N -0.52 -10.71 9.32 -186.79 -1.74 -12.45 16 24 C 0.36 7.62 7.31 138.71 1.01 8.63 16 25 C -0.13 -2.00 6.23 -11.54 -0.07 -2.07 16 26 C -0.14 -1.69 10.01 30.62 0.31 -1.38 16 27 C -0.14 -1.62 10.24 30.62 0.31 -1.31 16 28 N -0.53 -12.44 10.31 -186.80 -1.93 -14.36 16 29 C 0.20 4.64 10.97 85.06 0.93 5.57 16 30 H 0.07 1.38 5.72 -2.39 -0.01 1.37 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 35 H 0.36 18.47 6.63 -92.71 -0.61 17.85 16 36 H 0.24 15.16 6.78 -92.70 -0.63 14.53 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 1.82 4.73 -2.39 -0.01 1.81 16 40 H 0.10 1.78 7.47 -2.39 -0.02 1.76 16 41 H 0.20 2.73 6.66 -2.91 -0.02 2.71 16 42 H 0.14 1.90 8.14 -2.39 -0.02 1.89 16 43 H 0.10 1.44 7.53 -2.39 -0.02 1.43 16 44 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -71.32 376.35 2.05 -69.27 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.53 Total: 33.50 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 6.70 Total: 4.51 kcal Atomic # 7 Polarization: -134.78 SS G_CDS: -7.16 Total: -141.95 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.06 Total: -18.40 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Total: -71.32 2.05 -69.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044769465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.067 kcal (2) G-P(sol) polarization free energy of solvation -71.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds