Wall clock time and date at job start Tue Mar 31 2020 16:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39907 * 109.46826 * 2 1 4 4 F 1.39901 * 109.47401 * 240.00065 * 2 1 3 5 5 C 1.50701 * 109.46952 * 119.99780 * 2 1 3 6 6 O 1.21281 * 120.00109 * 342.89044 * 5 2 1 7 7 N 1.34779 * 119.99988 * 162.90073 * 5 2 1 8 8 C 1.46926 * 120.62824 * 357.04369 * 7 5 2 9 9 C 1.53196 * 108.77356 * 126.44235 * 8 7 5 10 10 C 1.53044 * 109.31551 * 54.63086 * 9 8 7 11 11 C 1.53036 * 109.53897 * 298.63913 * 10 9 8 12 12 H 1.08999 * 109.49652 * 301.38214 * 11 10 9 13 13 C 1.53001 * 109.49952 * 181.31533 * 11 10 9 14 14 C 1.53039 * 109.46098 * 180.02562 * 13 11 10 15 15 C 1.53193 * 109.31125 * 178.63117 * 14 13 11 16 16 N 1.46924 * 108.77756 * 54.62991 * 15 14 13 17 17 C 1.36934 * 120.63054 * 126.36986 * 16 15 14 18 18 H 1.08004 * 120.00000 * 332.09946 * 17 16 15 19 19 C 1.38812 * 119.99862 * 152.09292 * 17 16 15 20 20 N 1.31615 * 120.00017 * 335.61105 * 19 17 16 21 21 Si 1.86803 * 119.99768 * 155.60731 * 19 17 16 22 22 H 1.48494 * 109.46804 * 179.97438 * 21 19 17 23 23 H 1.48505 * 109.47078 * 60.00402 * 21 19 17 24 24 H 1.48493 * 109.47370 * 300.00469 * 21 19 17 25 25 C 1.46926 * 118.73929 * 306.64235 * 16 15 14 26 26 C 1.52761 * 109.00725 * 53.30982 * 25 16 15 27 27 C 1.46932 * 120.60536 * 177.07780 * 7 5 2 28 28 H 1.08998 * 109.47711 * 299.99995 * 1 2 3 29 29 H 1.09004 * 109.47053 * 60.00269 * 1 2 3 30 30 H 1.08998 * 109.47439 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.58977 * 6.65369 * 8 7 5 32 32 H 1.09002 * 109.58524 * 246.22295 * 8 7 5 33 33 H 1.09002 * 109.49358 * 294.68315 * 9 8 7 34 34 H 1.08995 * 109.49767 * 174.58517 * 9 8 7 35 35 H 1.08995 * 109.45699 * 178.61531 * 10 9 8 36 36 H 1.09002 * 109.44369 * 58.64709 * 10 9 8 37 37 H 1.09003 * 109.45244 * 300.03551 * 13 11 10 38 38 H 1.09000 * 109.50252 * 58.66950 * 14 13 11 39 39 H 1.09003 * 109.49285 * 298.57907 * 14 13 11 40 40 H 1.09006 * 109.57831 * 294.83924 * 15 14 13 41 41 H 1.09003 * 109.58473 * 174.42195 * 15 14 13 42 42 H 0.96999 * 120.00423 * 354.08565 * 20 19 17 43 43 H 1.08991 * 109.58748 * 173.14351 * 25 16 15 44 44 H 1.09001 * 109.59133 * 293.57640 * 25 16 15 45 45 H 1.09002 * 109.56615 * 185.55106 * 26 25 16 46 46 H 1.09005 * 109.38566 * 65.51512 * 26 25 16 47 47 H 1.08995 * 109.56715 * 113.75868 * 27 7 5 48 48 H 1.08999 * 109.61066 * 353.32623 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0322 -0.7104 1.2305 6 8 1.2879 -0.8959 2.1699 7 7 3.3087 -1.1393 1.2871 8 6 4.2040 -0.9795 0.1332 9 6 5.4746 -0.2567 0.5913 10 6 6.0936 -1.0168 1.7666 11 6 5.1058 -1.0449 2.9352 12 1 4.8587 -0.0242 3.2272 13 6 5.7380 -1.7765 4.1209 14 6 4.7493 -1.8046 5.2887 15 6 5.3725 -2.5674 6.4619 16 7 6.6708 -1.9599 6.7848 17 6 6.9506 -1.5486 8.0606 18 1 6.1497 -1.2407 8.7166 19 6 8.2635 -1.5276 8.5107 20 7 9.1626 -2.3114 7.9544 21 14 8.7542 -0.3866 9.9060 22 1 10.2008 -0.5539 10.1967 23 1 7.9645 -0.7196 11.1188 24 1 8.4873 1.0201 9.5124 25 6 7.6608 -1.7966 5.7115 26 6 7.0140 -1.0474 4.5479 27 6 3.8305 -1.7763 2.5041 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.7060 -0.3904 -0.6369 32 1 4.4649 -1.9599 -0.2654 33 1 5.2236 0.7565 0.9051 34 1 6.1875 -0.2170 -0.2322 35 1 7.0112 -0.5182 2.0786 36 1 6.3213 -2.0375 1.4591 37 1 5.9843 -2.7972 3.8282 38 1 3.8317 -2.3033 4.9767 39 1 4.5222 -0.7842 5.5977 40 1 5.5166 -3.6114 6.1835 41 1 4.7145 -2.5057 7.3287 42 1 8.8923 -2.9643 7.2900 43 1 8.5120 -1.2264 6.0833 44 1 7.9953 -2.7764 5.3707 45 1 7.7084 -1.0073 3.7086 46 1 6.7657 -0.0340 4.8633 47 1 4.0605 -2.8217 2.2990 48 1 3.0866 -1.7126 3.2981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047215166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:44 Heat of formation + Delta-G solvation = -122.189719 kcal Electronic energy + Delta-G solvation = -30145.744090 eV Core-core repulsion = 25871.477339 eV Total energy + Delta-G solvation = -4274.266751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.78017 -47.66597 -40.53321 -38.73919 -37.12108 -34.41989 -32.70131 -32.01258 -31.38028 -30.25282 -28.96322 -26.64596 -25.29841 -24.20334 -23.23965 -22.18959 -21.43488 -20.57771 -19.82267 -19.13774 -18.32160 -18.24734 -17.34921 -17.30597 -16.14557 -15.41581 -15.18759 -14.84268 -14.57172 -14.37106 -14.14700 -14.12373 -13.97785 -13.77210 -13.66127 -13.48072 -13.25926 -13.22627 -13.08122 -12.94813 -12.82490 -12.49059 -12.33057 -11.98883 -11.72209 -11.58738 -11.15096 -10.96778 -10.76591 -10.69715 -10.64264 -10.36430 -10.29132 -10.11932 -10.00259 -9.78558 -9.56932 -9.20690 -8.97115 -8.34652 -6.83875 -6.03122 -3.19751 1.79313 2.22192 3.18951 3.44931 3.51292 3.54322 3.72418 3.89449 4.10756 4.47425 4.62426 4.67623 4.70389 4.80230 4.95824 5.04038 5.10378 5.15860 5.24223 5.29857 5.41377 5.42947 5.46789 5.53490 5.59652 5.63486 5.68116 5.84698 5.88395 5.91562 5.98116 6.10056 6.15254 6.26173 6.29513 6.42247 6.55963 6.58997 6.72154 6.78209 6.84052 6.88750 7.12924 7.24262 7.43478 8.04184 8.61475 9.16433 9.88748 10.34113 11.24966 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.002693 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.484931 B =10394.877193 C =10766.942254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.281 3.719 3 F -0.181 7.181 4 F -0.185 7.185 5 C 0.484 3.516 6 O -0.505 6.505 7 N -0.589 5.589 8 C 0.083 3.917 9 C -0.135 4.135 10 C -0.119 4.119 11 C -0.095 4.095 12 H 0.073 0.927 13 C -0.069 4.069 14 C -0.131 4.131 15 C 0.148 3.852 16 N -0.599 5.599 17 C -0.347 4.347 18 H 0.054 0.946 19 C -0.025 4.025 20 N -0.918 5.918 21 Si 1.064 2.936 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.294 1.294 25 C 0.151 3.849 26 C -0.129 4.129 27 C 0.112 3.888 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.014 0.986 41 H 0.053 0.947 42 H 0.268 0.732 43 H 0.078 0.922 44 H 0.014 0.986 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 3.448 -21.170 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.241 3.759 3 F -0.162 7.162 4 F -0.166 7.166 5 C 0.266 3.734 6 O -0.379 6.379 7 N -0.320 5.320 8 C -0.039 4.039 9 C -0.173 4.173 10 C -0.156 4.156 11 C -0.114 4.114 12 H 0.091 0.909 13 C -0.088 4.088 14 C -0.170 4.170 15 C 0.022 3.978 16 N -0.324 5.324 17 C -0.476 4.476 18 H 0.072 0.928 19 C -0.227 4.227 20 N -0.558 5.558 21 Si 0.893 3.107 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.221 1.221 25 C 0.025 3.975 26 C -0.168 4.168 27 C -0.009 4.009 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.032 0.968 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.310 3.897 -19.743 23.590 hybrid contribution -1.158 -0.472 -1.125 1.682 sum -13.468 3.426 -20.868 25.072 Atomic orbital electron populations 1.22615 0.88654 1.06449 1.06106 1.21413 0.95922 0.76212 0.82324 1.93098 1.90500 1.36077 1.96550 1.92959 1.89577 1.80849 1.53166 1.20710 0.83137 0.80864 0.88682 1.90786 1.54991 1.55566 1.36606 1.48229 1.09890 1.57654 1.16263 1.22379 0.91533 1.02167 0.87805 1.21948 0.96324 0.99875 0.99172 1.21669 0.98919 1.00766 0.94256 1.21602 0.93870 1.00347 0.95579 0.90859 1.21008 0.96027 0.98753 0.93013 1.22113 0.96942 1.01350 0.96565 1.20880 0.88428 0.93576 0.94941 1.44105 1.12658 1.70141 1.05451 1.19987 0.95154 1.42384 0.90094 0.92778 1.25827 0.93433 1.00706 1.02750 1.70774 1.36866 1.18992 1.29210 0.83544 0.76005 0.75839 0.75269 1.21107 1.22020 1.22100 1.20842 0.93065 0.96430 0.87161 1.22075 0.95894 0.99979 0.98867 1.21976 0.96844 0.96154 0.85905 0.88030 0.89157 0.88683 0.88234 0.90463 0.91355 0.90369 0.90581 0.91686 0.91775 0.93004 0.92293 0.96806 0.92830 0.92067 0.90404 0.96827 0.92881 0.92502 0.90842 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 8.82 37.15 0.33 -0.97 16 2 C 0.28 2.69 1.80 -27.89 -0.05 2.64 16 3 F -0.18 -1.89 16.86 2.25 0.04 -1.86 16 4 F -0.18 -1.65 14.02 2.25 0.03 -1.62 16 5 C 0.48 5.86 7.19 -10.98 -0.08 5.78 16 6 O -0.50 -7.43 15.43 5.56 0.09 -7.34 16 7 N -0.59 -6.69 2.97 -172.76 -0.51 -7.21 16 8 C 0.08 0.76 5.81 -3.71 -0.02 0.73 16 9 C -0.14 -1.23 6.08 -26.61 -0.16 -1.39 16 10 C -0.12 -1.28 4.85 -26.69 -0.13 -1.41 16 11 C -0.09 -1.21 1.92 -90.50 -0.17 -1.39 16 12 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 13 C -0.07 -1.08 1.74 -90.58 -0.16 -1.23 16 14 C -0.13 -2.27 5.05 -26.61 -0.13 -2.40 16 15 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 16 N -0.60 -15.13 2.85 -172.58 -0.49 -15.63 16 17 C -0.35 -9.82 9.49 -15.06 -0.14 -9.96 16 18 H 0.05 1.55 7.94 -52.48 -0.42 1.13 16 19 C -0.03 -0.73 4.70 -17.43 -0.08 -0.81 16 20 N -0.92 -27.67 12.41 55.49 0.69 -26.98 16 21 Si 1.06 25.50 29.98 -169.99 -5.10 20.41 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.15 3.50 4.66 -3.93 -0.02 3.48 16 26 C -0.13 -2.34 5.03 -26.83 -0.13 -2.47 16 27 C 0.11 1.38 5.18 -3.70 -0.02 1.36 16 28 H 0.10 0.76 7.92 -51.93 -0.41 0.35 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.85 4.62 -51.93 -0.24 0.61 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.86 6.33 -51.93 -0.33 0.54 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.79 6.50 -51.93 -0.34 0.45 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.05 1.16 7.93 -51.93 -0.41 0.74 16 42 H 0.27 8.14 6.69 -40.82 -0.27 7.86 16 43 H 0.08 2.04 6.31 -51.93 -0.33 1.72 16 44 H 0.01 0.32 7.86 -51.93 -0.41 -0.08 16 45 H 0.05 0.85 6.33 -51.93 -0.33 0.52 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.10 1.37 5.61 -51.93 -0.29 1.08 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -31.66 366.43 -8.38 -40.04 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.64 Total: -0.42 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.00 Total: -4.92 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.32 Total: -49.81 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.09 Total: -7.34 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.07 Total: -3.47 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.10 Total: 20.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.66 -8.38 -40.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047215166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.147 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds