Wall clock time and date at job start Tue Mar 31 2020 16:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39907 * 109.46826 * 2 1 4 4 F 1.39901 * 109.47401 * 240.00065 * 2 1 3 5 5 C 1.50701 * 109.46952 * 119.99780 * 2 1 3 6 6 O 1.21281 * 120.00109 * 342.89044 * 5 2 1 7 7 N 1.34779 * 119.99988 * 162.90073 * 5 2 1 8 8 C 1.46926 * 120.62824 * 357.04369 * 7 5 2 9 9 C 1.53196 * 108.77356 * 126.44235 * 8 7 5 10 10 C 1.53044 * 109.31551 * 54.63086 * 9 8 7 11 11 C 1.53036 * 109.53897 * 298.63913 * 10 9 8 12 12 H 1.08999 * 109.49652 * 301.38214 * 11 10 9 13 13 C 1.53001 * 109.49952 * 181.31533 * 11 10 9 14 14 C 1.53039 * 109.46098 * 180.02562 * 13 11 10 15 15 C 1.53193 * 109.31125 * 178.63117 * 14 13 11 16 16 N 1.46924 * 108.77756 * 54.62991 * 15 14 13 17 17 C 1.36934 * 120.63054 * 126.36986 * 16 15 14 18 18 H 1.08004 * 120.00000 * 332.09946 * 17 16 15 19 19 C 1.38812 * 119.99862 * 152.09292 * 17 16 15 20 20 N 1.31615 * 120.00017 * 335.61105 * 19 17 16 21 21 Si 1.86803 * 119.99768 * 155.60731 * 19 17 16 22 22 H 1.48494 * 109.46804 * 179.97438 * 21 19 17 23 23 H 1.48505 * 109.47078 * 60.00402 * 21 19 17 24 24 H 1.48493 * 109.47370 * 300.00469 * 21 19 17 25 25 C 1.46926 * 118.73929 * 306.64235 * 16 15 14 26 26 C 1.52761 * 109.00725 * 53.30982 * 25 16 15 27 27 C 1.46932 * 120.60536 * 177.07780 * 7 5 2 28 28 H 1.08998 * 109.47711 * 299.99995 * 1 2 3 29 29 H 1.09004 * 109.47053 * 60.00269 * 1 2 3 30 30 H 1.08998 * 109.47439 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.58977 * 6.65369 * 8 7 5 32 32 H 1.09002 * 109.58524 * 246.22295 * 8 7 5 33 33 H 1.09002 * 109.49358 * 294.68315 * 9 8 7 34 34 H 1.08995 * 109.49767 * 174.58517 * 9 8 7 35 35 H 1.08995 * 109.45699 * 178.61531 * 10 9 8 36 36 H 1.09002 * 109.44369 * 58.64709 * 10 9 8 37 37 H 1.09003 * 109.45244 * 300.03551 * 13 11 10 38 38 H 1.09000 * 109.50252 * 58.66950 * 14 13 11 39 39 H 1.09003 * 109.49285 * 298.57907 * 14 13 11 40 40 H 1.09006 * 109.57831 * 294.83924 * 15 14 13 41 41 H 1.09003 * 109.58473 * 174.42195 * 15 14 13 42 42 H 0.96999 * 120.00423 * 354.08565 * 20 19 17 43 43 H 1.08991 * 109.58748 * 173.14351 * 25 16 15 44 44 H 1.09001 * 109.59133 * 293.57640 * 25 16 15 45 45 H 1.09002 * 109.56615 * 185.55106 * 26 25 16 46 46 H 1.09005 * 109.38566 * 65.51512 * 26 25 16 47 47 H 1.08995 * 109.56715 * 113.75868 * 27 7 5 48 48 H 1.08999 * 109.61066 * 353.32623 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0322 -0.7104 1.2305 6 8 1.2879 -0.8959 2.1699 7 7 3.3087 -1.1393 1.2871 8 6 4.2040 -0.9795 0.1332 9 6 5.4746 -0.2567 0.5913 10 6 6.0936 -1.0168 1.7666 11 6 5.1058 -1.0449 2.9352 12 1 4.8587 -0.0242 3.2272 13 6 5.7380 -1.7765 4.1209 14 6 4.7493 -1.8046 5.2887 15 6 5.3725 -2.5674 6.4619 16 7 6.6708 -1.9599 6.7848 17 6 6.9506 -1.5486 8.0606 18 1 6.1497 -1.2407 8.7166 19 6 8.2635 -1.5276 8.5107 20 7 9.1626 -2.3114 7.9544 21 14 8.7542 -0.3866 9.9060 22 1 10.2008 -0.5539 10.1967 23 1 7.9645 -0.7196 11.1188 24 1 8.4873 1.0201 9.5124 25 6 7.6608 -1.7966 5.7115 26 6 7.0140 -1.0474 4.5479 27 6 3.8305 -1.7763 2.5041 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.7060 -0.3904 -0.6369 32 1 4.4649 -1.9599 -0.2654 33 1 5.2236 0.7565 0.9051 34 1 6.1875 -0.2170 -0.2322 35 1 7.0112 -0.5182 2.0786 36 1 6.3213 -2.0375 1.4591 37 1 5.9843 -2.7972 3.8282 38 1 3.8317 -2.3033 4.9767 39 1 4.5222 -0.7842 5.5977 40 1 5.5166 -3.6114 6.1835 41 1 4.7145 -2.5057 7.3287 42 1 8.8923 -2.9643 7.2900 43 1 8.5120 -1.2264 6.0833 44 1 7.9953 -2.7764 5.3707 45 1 7.7084 -1.0073 3.7086 46 1 6.7657 -0.0340 4.8633 47 1 4.0605 -2.8217 2.2990 48 1 3.0866 -1.7126 3.2981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047215166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:43 Heat of formation + Delta-G solvation = -139.644905 kcal Electronic energy + Delta-G solvation = -30146.501004 eV Core-core repulsion = 25871.477339 eV Total energy + Delta-G solvation = -4275.023664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.52161 -48.41153 -41.49234 -40.01075 -38.43814 -35.95039 -33.95655 -32.88734 -32.59633 -31.85976 -30.51064 -27.62234 -26.85468 -25.27860 -24.56397 -23.62337 -22.75667 -21.65237 -20.82496 -20.69110 -19.44111 -19.08655 -18.99500 -18.12529 -17.02550 -16.42799 -16.31689 -16.08782 -15.86016 -15.71575 -15.46675 -15.36078 -15.11426 -14.95769 -14.80405 -14.70497 -14.55496 -14.24431 -14.15266 -13.83491 -13.62068 -13.51012 -13.42607 -13.25803 -13.15879 -12.82159 -12.52882 -12.41413 -12.13061 -12.07479 -11.92280 -11.90040 -11.79332 -11.56885 -11.54119 -11.17562 -10.95601 -10.88913 -10.48104 -9.90314 -8.93643 -8.25519 -5.41557 0.88667 1.38413 1.56074 1.63409 1.82695 2.40200 2.64094 2.74715 3.19800 3.21096 3.40289 3.51820 3.59222 3.66110 3.77701 3.96117 4.06227 4.07124 4.23940 4.30685 4.39351 4.46611 4.48848 4.50987 4.53405 4.58531 4.63611 4.70772 4.74363 4.77977 4.89627 4.89914 4.93255 4.98952 5.04536 5.13418 5.17593 5.23455 5.27221 5.32338 5.33421 5.39345 5.59233 5.81689 5.96584 6.38799 6.53887 7.06571 7.77865 8.22051 8.98572 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.002693 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.484931 B =10394.877193 C =10766.942254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.286 3.714 3 F -0.186 7.186 4 F -0.178 7.178 5 C 0.475 3.525 6 O -0.538 6.538 7 N -0.589 5.589 8 C 0.080 3.920 9 C -0.129 4.129 10 C -0.117 4.117 11 C -0.082 4.082 12 H 0.057 0.943 13 C -0.060 4.060 14 C -0.118 4.118 15 C 0.143 3.857 16 N -0.620 5.620 17 C -0.358 4.358 18 H 0.045 0.955 19 C -0.075 4.075 20 N -0.941 5.941 21 Si 1.114 2.886 22 H -0.289 1.289 23 H -0.277 1.277 24 H -0.281 1.281 25 C 0.156 3.844 26 C -0.115 4.115 27 C 0.115 3.885 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.017 0.983 41 H 0.042 0.958 42 H 0.254 0.746 43 H 0.040 0.960 44 H 0.005 0.995 45 H 0.080 0.920 46 H 0.042 0.958 47 H 0.088 0.912 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.989 3.880 -23.483 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.247 3.753 3 F -0.167 7.167 4 F -0.159 7.159 5 C 0.259 3.741 6 O -0.415 6.415 7 N -0.320 5.320 8 C -0.041 4.041 9 C -0.167 4.167 10 C -0.154 4.154 11 C -0.102 4.102 12 H 0.076 0.924 13 C -0.079 4.079 14 C -0.157 4.157 15 C 0.018 3.982 16 N -0.345 5.345 17 C -0.487 4.487 18 H 0.063 0.937 19 C -0.271 4.271 20 N -0.583 5.583 21 Si 0.938 3.062 22 H -0.215 1.215 23 H -0.203 1.203 24 H -0.207 1.207 25 C 0.030 3.970 26 C -0.154 4.154 27 C -0.007 4.007 28 H 0.114 0.886 29 H 0.132 0.868 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.035 0.965 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.023 0.977 45 H 0.098 0.902 46 H 0.061 0.939 47 H 0.106 0.894 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.081 4.328 -22.100 26.043 hybrid contribution -0.941 -0.658 -0.410 1.220 sum -14.023 3.670 -22.510 26.773 Atomic orbital electron populations 1.22672 0.86766 1.07186 1.07014 1.21373 0.97044 0.75563 0.81341 1.93092 1.90714 1.36419 1.96524 1.92970 1.89649 1.80710 1.52592 1.21216 0.83102 0.80625 0.89195 1.90766 1.55900 1.56893 1.37978 1.48354 1.10110 1.57058 1.16487 1.22586 0.91060 1.03378 0.87046 1.21920 0.96730 0.98885 0.99184 1.21660 0.98023 1.01840 0.93914 1.21407 0.94674 0.98907 0.95179 0.92437 1.20903 0.94354 0.99229 0.93431 1.21964 0.98153 0.99977 0.95621 1.21030 0.86852 0.94120 0.96235 1.44369 1.14135 1.70855 1.05117 1.20224 0.95147 1.41928 0.91438 0.93692 1.27182 0.93685 1.01496 1.04781 1.70890 1.37256 1.20033 1.30169 0.82876 0.75542 0.74549 0.73242 1.21480 1.20274 1.20722 1.20740 0.92048 0.95964 0.88219 1.21902 0.97421 0.98509 0.97585 1.21838 0.95804 0.96902 0.86139 0.88609 0.86765 0.88078 0.87527 0.88623 0.92392 0.87839 0.91032 0.90409 0.90963 0.90455 0.93780 0.96490 0.93894 0.93563 0.94096 0.97706 0.90158 0.93898 0.89402 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 8.82 71.98 0.63 -1.58 16 2 C 0.29 4.91 1.80 29.85 0.05 4.97 16 3 F -0.19 -3.55 16.86 44.97 0.76 -2.79 16 4 F -0.18 -2.70 14.02 44.97 0.63 -2.07 16 5 C 0.48 10.84 7.19 87.66 0.63 11.47 16 6 O -0.54 -15.54 15.43 -3.03 -0.05 -15.58 16 7 N -0.59 -12.16 2.97 -818.87 -2.43 -14.60 16 8 C 0.08 1.20 5.81 86.36 0.50 1.70 16 9 C -0.13 -1.93 6.08 30.67 0.19 -1.75 16 10 C -0.12 -2.18 4.85 30.62 0.15 -2.03 16 11 C -0.08 -1.96 1.92 -10.71 -0.02 -1.98 16 12 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 13 C -0.06 -1.80 1.74 -10.77 -0.02 -1.82 16 14 C -0.12 -4.05 5.05 30.67 0.15 -3.90 16 15 C 0.14 6.16 6.52 86.36 0.56 6.72 16 16 N -0.62 -32.08 2.85 -699.93 -2.00 -34.08 16 17 C -0.36 -20.76 9.49 84.03 0.80 -19.96 16 18 H 0.05 2.64 7.94 -2.91 -0.02 2.61 16 19 C -0.08 -4.38 4.70 84.86 0.40 -3.98 16 20 N -0.94 -58.29 12.41 21.65 0.27 -58.02 16 21 Si 1.11 52.10 29.98 68.60 2.06 54.16 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 C 0.16 7.40 4.66 86.22 0.40 7.80 16 26 C -0.12 -4.13 5.03 30.53 0.15 -3.98 16 27 C 0.11 2.59 5.18 86.36 0.45 3.04 16 28 H 0.10 1.32 7.92 -2.39 -0.02 1.30 16 29 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.49 4.62 -2.39 -0.01 1.47 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.42 6.33 -2.39 -0.02 1.41 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.27 6.50 -2.39 -0.02 2.26 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.04 1.89 7.93 -2.39 -0.02 1.88 16 42 H 0.25 16.01 6.69 -92.71 -0.62 15.39 16 43 H 0.04 2.22 6.31 -2.39 -0.02 2.21 16 44 H 0.00 0.24 7.86 -2.39 -0.02 0.22 16 45 H 0.08 2.44 6.33 -2.39 -0.02 2.42 16 46 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.08 2.14 5.61 -2.39 -0.01 2.13 16 Total: -1.00 -70.65 366.43 5.37 -65.27 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.10 Total: 12.99 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.03 Total: -5.28 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -4.16 Total: -106.70 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.05 Total: -15.58 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 1.39 Total: -4.86 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 2.06 Total: 54.16 kcal Total: -70.65 5.37 -65.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047215166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.371 kcal (2) G-P(sol) polarization free energy of solvation -70.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds