Wall clock time and date at job start Tue Mar 31 2020 16:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39895 * 109.47183 * 2 1 4 4 F 1.39898 * 109.47172 * 240.00038 * 2 1 3 5 5 C 1.50700 * 109.46746 * 120.00023 * 2 1 3 6 6 O 1.21283 * 120.00242 * 339.92137 * 5 2 1 7 7 N 1.34781 * 119.99988 * 159.92723 * 5 2 1 8 8 C 1.46923 * 120.62760 * 4.96171 * 7 5 2 9 9 C 1.53197 * 108.77547 * 126.43757 * 8 7 5 10 10 C 1.53039 * 109.30998 * 54.63386 * 9 8 7 11 11 C 1.53044 * 109.53874 * 298.63438 * 10 9 8 12 12 H 1.08996 * 109.49622 * 301.38486 * 11 10 9 13 13 C 1.53000 * 109.49749 * 181.31723 * 11 10 9 14 14 H 1.09007 * 109.52382 * 300.14788 * 13 11 10 15 15 C 1.53042 * 109.49770 * 180.02562 * 13 11 10 16 16 C 1.53038 * 109.53695 * 178.68145 * 15 13 11 17 17 C 1.53199 * 109.31036 * 61.36650 * 16 15 13 18 18 N 1.46924 * 108.77552 * 305.36292 * 17 16 15 19 19 C 1.36931 * 120.62747 * 233.60883 * 18 17 16 20 20 H 1.08008 * 119.99953 * 153.44985 * 19 18 17 21 21 C 1.38819 * 120.00342 * 333.44701 * 19 18 17 22 22 N 1.31611 * 119.99780 * 343.56061 * 21 19 18 23 23 Si 1.86804 * 120.00003 * 163.56335 * 21 19 18 24 24 H 1.48498 * 109.46745 * 89.99922 * 23 21 19 25 25 H 1.48495 * 109.46529 * 209.99935 * 23 21 19 26 26 H 1.48492 * 109.46974 * 330.00021 * 23 21 19 27 27 C 1.46925 * 118.74070 * 53.61016 * 18 17 16 28 28 C 1.46932 * 120.60399 * 184.98959 * 7 5 2 29 29 H 1.08999 * 109.47171 * 300.00641 * 1 2 3 30 30 H 1.09007 * 109.46887 * 59.99897 * 1 2 3 31 31 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.59006 * 6.65214 * 8 7 5 33 33 H 1.09000 * 109.58992 * 246.22687 * 8 7 5 34 34 H 1.08997 * 109.49407 * 294.68403 * 9 8 7 35 35 H 1.08998 * 109.49865 * 174.58786 * 9 8 7 36 36 H 1.09005 * 109.45748 * 178.61930 * 10 9 8 37 37 H 1.08997 * 109.45050 * 58.65104 * 10 9 8 38 38 H 1.08996 * 109.45899 * 298.70529 * 15 13 11 39 39 H 1.09000 * 109.45682 * 58.67955 * 15 13 11 40 40 H 1.08999 * 109.49447 * 181.31552 * 16 15 13 41 41 H 1.08989 * 109.50182 * 301.38470 * 16 15 13 42 42 H 1.09000 * 109.58352 * 65.15236 * 17 16 15 43 43 H 1.09004 * 109.58417 * 185.43152 * 17 16 15 44 44 H 0.96995 * 120.00154 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.58699 * 186.60672 * 27 18 17 46 46 H 1.09002 * 109.58827 * 66.17689 * 27 18 17 47 47 H 1.08999 * 109.56126 * 113.76285 * 28 7 5 48 48 H 1.08992 * 109.61583 * 353.32995 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 1.3043 -0.8484 2.1907 7 7 3.2905 -1.1924 1.2640 8 6 4.2188 -0.9392 0.1537 9 6 5.5034 -0.3221 0.7159 10 6 6.0654 -1.2326 1.8101 11 6 5.0491 -1.3529 2.9480 12 1 4.8323 -0.3626 3.3483 13 6 5.6253 -2.2368 4.0560 14 1 5.8436 -3.2269 3.6557 15 6 4.6087 -2.3576 5.1936 16 6 5.1708 -3.2682 6.2877 17 6 6.4550 -2.6508 6.8503 18 7 7.3836 -2.3972 5.7403 19 6 8.6618 -2.8872 5.7742 20 1 9.1887 -3.0856 4.8525 21 6 9.2804 -3.1290 6.9932 22 7 8.7921 -2.6006 8.0952 23 14 10.8060 -4.2043 7.0693 24 1 12.0159 -3.3591 6.9047 25 1 10.8596 -4.8950 8.3827 26 1 10.7552 -5.2132 5.9810 27 6 6.9147 -1.6078 4.5933 28 6 3.7590 -1.9813 2.4116 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.7615 -0.2487 -0.5548 33 1 4.4536 -1.8781 -0.3477 34 1 5.2818 0.6585 1.1369 35 1 6.2371 -0.2181 -0.0834 36 1 6.9928 -0.8081 2.1949 37 1 6.2634 -2.2204 1.3940 38 1 4.4102 -1.3699 5.6096 39 1 3.6818 -2.7826 4.8086 40 1 4.4369 -3.3725 7.0867 41 1 5.3923 -4.2488 5.8667 42 1 6.2198 -1.7120 7.3518 43 1 6.9111 -3.3403 7.5608 44 1 9.2241 -2.7698 8.9470 45 1 7.6753 -1.6101 3.8126 46 1 6.7170 -0.5839 4.9107 47 1 3.9558 -3.0054 2.0945 48 1 2.9989 -1.9781 3.1926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053000360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:53 Heat of formation + Delta-G solvation = -121.473738 kcal Electronic energy + Delta-G solvation = -30161.611924 eV Core-core repulsion = 25887.376220 eV Total energy + Delta-G solvation = -4274.235703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -49.69551 -47.59243 -40.46130 -38.59474 -36.95648 -34.07077 -32.73802 -31.97199 -31.46296 -30.43754 -28.53219 -26.51746 -25.26725 -24.33220 -23.39706 -22.03414 -21.39444 -20.45494 -19.72693 -19.05016 -18.24337 -18.16190 -17.23047 -16.68260 -16.06301 -15.44627 -15.05218 -14.86102 -14.67188 -14.36062 -14.10028 -13.98504 -13.91248 -13.74821 -13.64752 -13.31843 -13.13040 -13.05785 -12.94857 -12.85097 -12.54692 -12.45506 -12.23064 -12.14642 -11.61004 -11.38499 -11.17269 -10.94164 -10.83955 -10.67590 -10.55198 -10.30126 -10.15308 -10.12472 -10.08072 -9.84044 -9.40966 -9.33370 -8.90724 -8.43799 -6.65047 -5.75941 -3.17850 1.84556 2.27488 3.24752 3.37739 3.44796 3.46869 3.49849 3.94810 4.15244 4.49323 4.55372 4.77251 4.80158 4.91605 4.99370 5.12374 5.14075 5.21855 5.38062 5.38975 5.45280 5.50939 5.57405 5.60796 5.69718 5.72686 5.79929 5.91866 5.95402 6.05713 6.11563 6.24200 6.29283 6.41743 6.44177 6.49761 6.68302 6.74816 6.84909 6.90970 6.93916 7.03930 7.45701 7.48855 7.72833 7.81303 8.47200 9.23882 9.88076 10.44106 11.31992 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.002751 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.428020 B =10174.514323 C =10779.680882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.281 3.719 3 F -0.182 7.182 4 F -0.186 7.186 5 C 0.484 3.516 6 O -0.506 6.506 7 N -0.589 5.589 8 C 0.092 3.908 9 C -0.135 4.135 10 C -0.118 4.118 11 C -0.092 4.092 12 H 0.073 0.927 13 C -0.095 4.095 14 H 0.068 0.932 15 C -0.106 4.106 16 C -0.142 4.142 17 C 0.168 3.832 18 N -0.592 5.592 19 C -0.249 4.249 20 H 0.065 0.935 21 C 0.000 4.000 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.155 3.845 28 C 0.112 3.888 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.015 0.985 43 H 0.090 0.910 44 H 0.253 0.747 45 H 0.053 0.947 46 H 0.015 0.985 47 H 0.074 0.926 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.542 4.171 -18.260 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.241 3.759 3 F -0.163 7.163 4 F -0.167 7.167 5 C 0.266 3.734 6 O -0.381 6.381 7 N -0.320 5.320 8 C -0.030 4.030 9 C -0.173 4.173 10 C -0.156 4.156 11 C -0.112 4.112 12 H 0.091 0.909 13 C -0.116 4.116 14 H 0.087 0.913 15 C -0.144 4.144 16 C -0.181 4.181 17 C 0.042 3.958 18 N -0.315 5.315 19 C -0.379 4.379 20 H 0.083 0.917 21 C -0.199 4.199 22 N -0.549 5.549 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.029 3.971 28 C -0.009 4.009 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.033 0.967 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.033 0.967 47 H 0.092 0.908 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.806 4.081 -17.587 23.349 hybrid contribution 0.989 -0.413 -0.080 1.075 sum -13.817 3.668 -17.667 22.726 Atomic orbital electron populations 1.22616 0.88735 1.06384 1.06090 1.21398 0.95870 0.76173 0.82463 1.93090 1.90468 1.36188 1.96581 1.93012 1.89954 1.80784 1.52957 1.20720 0.83053 0.80885 0.88732 1.90780 1.55670 1.56776 1.34868 1.48237 1.10714 1.51641 1.21457 1.22206 0.90609 1.01911 0.88277 1.21951 0.96156 0.99796 0.99392 1.21655 0.99077 0.99895 0.94966 1.21529 0.93594 1.00297 0.95758 0.90868 1.21665 0.97464 0.98876 0.93564 0.91319 1.21500 0.96736 0.99826 0.96291 1.22179 0.99598 0.99016 0.97348 1.20828 0.86651 0.98081 0.90210 1.44055 1.09837 1.59457 1.18116 1.19178 0.90335 1.36253 0.92119 0.91740 1.25007 0.98065 1.00480 0.96302 1.70022 1.41720 1.44942 0.98204 0.86311 0.83021 0.80553 0.76989 1.21460 1.21586 1.20548 1.20910 0.92655 0.92859 0.90714 1.21988 0.97537 0.93837 0.87498 0.88034 0.89182 0.88748 0.89093 0.90437 0.91358 0.90335 0.90410 0.91600 0.92827 0.93651 0.93450 0.92879 0.96704 0.89219 0.93678 0.92809 0.96709 0.90818 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 8.85 37.16 0.33 -0.99 16 2 C 0.28 2.74 1.78 -27.88 -0.05 2.69 16 3 F -0.18 -1.93 16.65 2.25 0.04 -1.89 16 4 F -0.19 -1.73 14.26 2.25 0.03 -1.70 16 5 C 0.48 5.95 7.15 -10.98 -0.08 5.87 16 6 O -0.51 -7.51 15.45 5.55 0.09 -7.42 16 7 N -0.59 -6.86 2.97 -172.77 -0.51 -7.38 16 8 C 0.09 0.88 5.63 -3.71 -0.02 0.86 16 9 C -0.13 -1.30 6.08 -26.61 -0.16 -1.47 16 10 C -0.12 -1.38 4.86 -26.69 -0.13 -1.51 16 11 C -0.09 -1.23 1.92 -90.50 -0.17 -1.41 16 12 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 13 C -0.09 -1.56 1.92 -90.50 -0.17 -1.74 16 14 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 15 C -0.11 -1.80 4.86 -26.69 -0.13 -1.93 16 16 C -0.14 -2.77 6.08 -26.61 -0.16 -2.93 16 17 C 0.17 4.06 5.31 -3.71 -0.02 4.04 16 18 N -0.59 -14.78 3.00 -172.31 -0.52 -15.29 16 19 C -0.25 -6.81 9.61 -15.06 -0.14 -6.95 16 20 H 0.06 1.72 7.88 -52.48 -0.41 1.31 16 21 C 0.00 -0.01 4.95 -17.43 -0.09 -0.10 16 22 N -0.90 -26.36 11.04 55.49 0.61 -25.74 16 23 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.16 3.16 5.28 -3.71 -0.02 3.14 16 28 C 0.11 1.41 5.20 -3.71 -0.02 1.39 16 29 H 0.10 0.77 7.90 -51.93 -0.41 0.36 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.82 4.85 -51.93 -0.25 0.56 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.98 6.50 -51.93 -0.34 0.65 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.04 0.69 6.50 -51.93 -0.34 0.35 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 1.05 8.14 -51.94 -0.42 0.62 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 2.43 5.92 -51.93 -0.31 2.12 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 45 H 0.05 1.06 6.52 -51.93 -0.34 0.72 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.10 1.37 5.59 -51.93 -0.29 1.08 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -30.55 367.70 -8.53 -39.08 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.74 Total: -0.80 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.04 Total: -1.03 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.42 Total: -48.41 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.09 Total: -7.42 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.07 Total: -3.59 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.55 -8.53 -39.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053000360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.397 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds