Wall clock time and date at job start Tue Mar 31 2020 16:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39895 * 109.47183 * 2 1 4 4 F 1.39898 * 109.47172 * 240.00038 * 2 1 3 5 5 C 1.50700 * 109.46746 * 120.00023 * 2 1 3 6 6 O 1.21283 * 120.00242 * 339.92137 * 5 2 1 7 7 N 1.34781 * 119.99988 * 159.92723 * 5 2 1 8 8 C 1.46923 * 120.62760 * 4.96171 * 7 5 2 9 9 C 1.53197 * 108.77547 * 126.43757 * 8 7 5 10 10 C 1.53039 * 109.30998 * 54.63386 * 9 8 7 11 11 C 1.53044 * 109.53874 * 298.63438 * 10 9 8 12 12 H 1.08996 * 109.49622 * 301.38486 * 11 10 9 13 13 C 1.53000 * 109.49749 * 181.31723 * 11 10 9 14 14 H 1.09007 * 109.52382 * 300.14788 * 13 11 10 15 15 C 1.53042 * 109.49770 * 180.02562 * 13 11 10 16 16 C 1.53038 * 109.53695 * 178.68145 * 15 13 11 17 17 C 1.53199 * 109.31036 * 61.36650 * 16 15 13 18 18 N 1.46924 * 108.77552 * 305.36292 * 17 16 15 19 19 C 1.36931 * 120.62747 * 233.60883 * 18 17 16 20 20 H 1.08008 * 119.99953 * 153.44985 * 19 18 17 21 21 C 1.38819 * 120.00342 * 333.44701 * 19 18 17 22 22 N 1.31611 * 119.99780 * 343.56061 * 21 19 18 23 23 Si 1.86804 * 120.00003 * 163.56335 * 21 19 18 24 24 H 1.48498 * 109.46745 * 89.99922 * 23 21 19 25 25 H 1.48495 * 109.46529 * 209.99935 * 23 21 19 26 26 H 1.48492 * 109.46974 * 330.00021 * 23 21 19 27 27 C 1.46925 * 118.74070 * 53.61016 * 18 17 16 28 28 C 1.46932 * 120.60399 * 184.98959 * 7 5 2 29 29 H 1.08999 * 109.47171 * 300.00641 * 1 2 3 30 30 H 1.09007 * 109.46887 * 59.99897 * 1 2 3 31 31 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.59006 * 6.65214 * 8 7 5 33 33 H 1.09000 * 109.58992 * 246.22687 * 8 7 5 34 34 H 1.08997 * 109.49407 * 294.68403 * 9 8 7 35 35 H 1.08998 * 109.49865 * 174.58786 * 9 8 7 36 36 H 1.09005 * 109.45748 * 178.61930 * 10 9 8 37 37 H 1.08997 * 109.45050 * 58.65104 * 10 9 8 38 38 H 1.08996 * 109.45899 * 298.70529 * 15 13 11 39 39 H 1.09000 * 109.45682 * 58.67955 * 15 13 11 40 40 H 1.08999 * 109.49447 * 181.31552 * 16 15 13 41 41 H 1.08989 * 109.50182 * 301.38470 * 16 15 13 42 42 H 1.09000 * 109.58352 * 65.15236 * 17 16 15 43 43 H 1.09004 * 109.58417 * 185.43152 * 17 16 15 44 44 H 0.96995 * 120.00154 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.58699 * 186.60672 * 27 18 17 46 46 H 1.09002 * 109.58827 * 66.17689 * 27 18 17 47 47 H 1.08999 * 109.56126 * 113.76285 * 28 7 5 48 48 H 1.08992 * 109.61583 * 353.32995 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 1.3043 -0.8484 2.1907 7 7 3.2905 -1.1924 1.2640 8 6 4.2188 -0.9392 0.1537 9 6 5.5034 -0.3221 0.7159 10 6 6.0654 -1.2326 1.8101 11 6 5.0491 -1.3529 2.9480 12 1 4.8323 -0.3626 3.3483 13 6 5.6253 -2.2368 4.0560 14 1 5.8436 -3.2269 3.6557 15 6 4.6087 -2.3576 5.1936 16 6 5.1708 -3.2682 6.2877 17 6 6.4550 -2.6508 6.8503 18 7 7.3836 -2.3972 5.7403 19 6 8.6618 -2.8872 5.7742 20 1 9.1887 -3.0856 4.8525 21 6 9.2804 -3.1290 6.9932 22 7 8.7921 -2.6006 8.0952 23 14 10.8060 -4.2043 7.0693 24 1 12.0159 -3.3591 6.9047 25 1 10.8596 -4.8950 8.3827 26 1 10.7552 -5.2132 5.9810 27 6 6.9147 -1.6078 4.5933 28 6 3.7590 -1.9813 2.4116 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.7615 -0.2487 -0.5548 33 1 4.4536 -1.8781 -0.3477 34 1 5.2818 0.6585 1.1369 35 1 6.2371 -0.2181 -0.0834 36 1 6.9928 -0.8081 2.1949 37 1 6.2634 -2.2204 1.3940 38 1 4.4102 -1.3699 5.6096 39 1 3.6818 -2.7826 4.8086 40 1 4.4369 -3.3725 7.0867 41 1 5.3923 -4.2488 5.8667 42 1 6.2198 -1.7120 7.3518 43 1 6.9111 -3.3403 7.5608 44 1 9.2241 -2.7698 8.9470 45 1 7.6753 -1.6101 3.8126 46 1 6.7170 -0.5839 4.9107 47 1 3.9558 -3.0054 2.0945 48 1 2.9989 -1.9781 3.1926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053000360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:52 Heat of formation + Delta-G solvation = -137.846077 kcal Electronic energy + Delta-G solvation = -30162.321881 eV Core-core repulsion = 25887.376220 eV Total energy + Delta-G solvation = -4274.945661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -50.45526 -48.35372 -41.44477 -39.87124 -38.27970 -35.60465 -34.06425 -32.88580 -32.54061 -32.23430 -29.91980 -27.57777 -27.00281 -25.37628 -24.57436 -23.48209 -22.77104 -21.56606 -20.73939 -20.59945 -19.12801 -18.93177 -18.61936 -18.06079 -17.01047 -16.81861 -16.43678 -15.98678 -15.74797 -15.60934 -15.35043 -15.09091 -14.94386 -14.88548 -14.66325 -14.55534 -14.52767 -14.16125 -14.06654 -13.85354 -13.63682 -13.53544 -13.36761 -13.14492 -13.00292 -12.90507 -12.66705 -12.44521 -12.28305 -11.98112 -11.95923 -11.84562 -11.72997 -11.64342 -11.47932 -11.20114 -10.92284 -10.80871 -10.52650 -9.87053 -8.68168 -7.85670 -5.30966 0.92211 1.41271 1.46424 1.47991 1.57688 2.43786 2.51704 2.78320 3.24576 3.28335 3.43760 3.56275 3.69516 3.83815 3.84379 3.99953 4.10853 4.18763 4.29325 4.34033 4.45382 4.50218 4.54138 4.56016 4.60833 4.71287 4.74114 4.80247 4.83347 4.89922 4.93751 4.94730 5.01799 5.07831 5.09375 5.23447 5.30336 5.33635 5.35715 5.42045 5.51150 5.58821 5.67179 5.79219 5.99958 6.39541 6.56986 7.15280 7.87746 8.39155 9.20323 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.002751 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.428020 B =10174.514323 C =10779.680882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.286 3.714 3 F -0.187 7.187 4 F -0.181 7.181 5 C 0.476 3.524 6 O -0.537 6.537 7 N -0.590 5.590 8 C 0.091 3.909 9 C -0.129 4.129 10 C -0.117 4.117 11 C -0.081 4.081 12 H 0.058 0.942 13 C -0.080 4.080 14 H 0.070 0.930 15 C -0.101 4.101 16 C -0.131 4.131 17 C 0.173 3.827 18 N -0.611 5.611 19 C -0.258 4.258 20 H 0.070 0.930 21 C -0.056 4.056 22 N -0.939 5.939 23 Si 0.968 3.032 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.268 1.268 27 C 0.154 3.846 28 C 0.117 3.883 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.053 0.947 42 H -0.012 1.012 43 H 0.056 0.944 44 H 0.249 0.751 45 H 0.059 0.941 46 H 0.002 0.998 47 H 0.088 0.912 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.224 3.566 -21.113 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.246 3.754 3 F -0.168 7.168 4 F -0.162 7.162 5 C 0.260 3.740 6 O -0.415 6.415 7 N -0.321 5.321 8 C -0.031 4.031 9 C -0.166 4.166 10 C -0.154 4.154 11 C -0.101 4.101 12 H 0.077 0.923 13 C -0.101 4.101 14 H 0.088 0.912 15 C -0.139 4.139 16 C -0.170 4.170 17 C 0.047 3.953 18 N -0.334 5.334 19 C -0.388 4.388 20 H 0.088 0.912 21 C -0.251 4.251 22 N -0.585 5.585 23 Si 0.796 3.204 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.193 1.193 27 C 0.029 3.971 28 C -0.005 4.005 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.006 0.994 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.020 0.980 47 H 0.106 0.894 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.491 3.486 -20.493 25.924 hybrid contribution 1.221 -0.166 0.801 1.470 sum -14.270 3.320 -19.692 24.544 Atomic orbital electron populations 1.22675 0.86744 1.07167 1.07029 1.21376 0.97059 0.75531 0.81434 1.93085 1.90685 1.36506 1.96549 1.93023 1.90046 1.80670 1.52440 1.21216 0.82944 0.80627 0.89247 1.90761 1.56517 1.58016 1.36180 1.48350 1.11010 1.51151 1.21573 1.22388 0.89935 1.03058 0.87695 1.21915 0.96782 0.98666 0.99286 1.21630 0.97964 1.00932 0.94901 1.21361 0.94649 0.98739 0.95363 0.92304 1.21444 0.95315 0.99092 0.94233 0.91165 1.21470 0.97857 0.98928 0.95618 1.22015 0.97493 0.98977 0.98547 1.20635 0.88516 0.96211 0.89890 1.44342 1.09558 1.60268 1.19237 1.19551 0.91269 1.35689 0.92334 0.91240 1.25800 1.01243 1.01984 0.96040 1.70193 1.43305 1.46528 0.98519 0.85267 0.79458 0.78873 0.76821 1.21172 1.22063 1.19315 1.21043 0.94731 0.91937 0.89396 1.21830 0.96259 0.94587 0.87782 0.88529 0.86820 0.88085 0.88297 0.88617 0.92317 0.87950 0.91641 0.90581 0.93685 0.90885 0.91828 0.92818 0.99418 0.92579 0.94219 0.92296 0.98029 0.89379 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 8.85 71.98 0.64 -1.59 16 2 C 0.29 4.98 1.78 29.85 0.05 5.03 16 3 F -0.19 -3.60 16.65 44.97 0.75 -2.85 16 4 F -0.18 -2.85 14.26 44.97 0.64 -2.21 16 5 C 0.48 10.95 7.15 87.66 0.63 11.57 16 6 O -0.54 -15.48 15.45 -3.04 -0.05 -15.52 16 7 N -0.59 -12.49 2.97 -818.89 -2.43 -14.93 16 8 C 0.09 1.45 5.63 86.36 0.49 1.94 16 9 C -0.13 -2.15 6.08 30.67 0.19 -1.96 16 10 C -0.12 -2.49 4.86 30.62 0.15 -2.34 16 11 C -0.08 -2.07 1.92 -10.71 -0.02 -2.09 16 12 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 13 C -0.08 -2.56 1.92 -10.71 -0.02 -2.58 16 14 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 15 C -0.10 -3.35 4.86 30.62 0.15 -3.20 16 16 C -0.13 -5.08 6.08 30.67 0.19 -4.89 16 17 C 0.17 8.66 5.31 86.37 0.46 9.12 16 18 N -0.61 -31.07 3.00 -699.07 -2.10 -33.17 16 19 C -0.26 -14.26 9.61 84.04 0.81 -13.46 16 20 H 0.07 3.69 7.88 -2.91 -0.02 3.66 16 21 C -0.06 -3.16 4.95 84.86 0.42 -2.74 16 22 N -0.94 -56.59 11.04 21.65 0.24 -56.35 16 23 Si 0.97 45.09 29.59 68.60 2.03 47.12 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 C 0.15 6.31 5.28 86.36 0.46 6.77 16 28 C 0.12 2.70 5.20 86.36 0.45 3.15 16 29 H 0.10 1.32 7.90 -2.39 -0.02 1.31 16 30 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.47 4.85 -2.39 -0.01 1.46 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.57 6.50 -2.38 -0.02 1.55 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 2.06 6.50 -2.39 -0.02 2.05 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.06 3.17 5.92 -2.38 -0.01 3.16 16 44 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 45 H 0.06 2.31 6.52 -2.39 -0.02 2.30 16 46 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.08 2.21 5.59 -2.39 -0.01 2.20 16 Total: -1.00 -67.53 367.70 5.05 -62.48 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.95 Total: 12.71 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.02 Total: 2.73 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -4.29 Total: -104.45 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.05 Total: -15.52 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 1.39 Total: -5.06 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -67.53 5.05 -62.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053000360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.368 kcal (2) G-P(sol) polarization free energy of solvation -67.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds