Wall clock time and date at job start Tue Mar 31 2020 16:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39896 * 109.46693 * 2 1 4 4 F 1.39898 * 109.46696 * 239.99956 * 2 1 3 5 5 C 1.50694 * 109.46921 * 119.99894 * 2 1 3 6 6 O 1.21286 * 120.00459 * 15.47331 * 5 2 1 7 7 N 1.34777 * 119.99951 * 195.75238 * 5 2 1 8 8 C 1.46927 * 120.63482 * 183.34871 * 7 5 2 9 9 C 1.53191 * 108.77577 * 126.36478 * 8 7 5 10 10 C 1.53036 * 109.31543 * 54.63759 * 9 8 7 11 11 C 1.53038 * 109.53760 * 298.63269 * 10 9 8 12 12 H 1.09004 * 109.49811 * 301.41274 * 11 10 9 13 13 C 1.52996 * 109.50077 * 181.34874 * 11 10 9 14 14 H 1.09006 * 109.49478 * 300.00124 * 13 11 10 15 15 C 1.53040 * 109.49678 * 60.06392 * 13 11 10 16 16 C 1.53041 * 109.53958 * 181.28666 * 15 13 11 17 17 C 1.53192 * 109.33951 * 298.68367 * 16 15 13 18 18 N 1.46932 * 108.77481 * 54.61911 * 17 16 15 19 19 C 1.36934 * 120.63180 * 126.41551 * 18 17 16 20 20 H 1.07996 * 119.99859 * 208.30624 * 19 18 17 21 21 C 1.38819 * 119.99986 * 28.30475 * 19 18 17 22 22 N 1.31615 * 119.99911 * 16.45043 * 21 19 18 23 23 Si 1.86798 * 119.99848 * 196.45050 * 21 19 18 24 24 H 1.48497 * 109.47313 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47239 * 120.00159 * 23 21 19 26 26 H 1.48499 * 109.46931 * 239.99957 * 23 21 19 27 27 C 1.46925 * 118.73787 * 306.38812 * 18 17 16 28 28 C 1.46928 * 120.63026 * 3.06160 * 7 5 2 29 29 H 1.09000 * 109.47333 * 299.99853 * 1 2 3 30 30 H 1.08995 * 109.47480 * 60.00125 * 1 2 3 31 31 H 1.09000 * 109.47162 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.58385 * 246.15175 * 8 7 5 33 33 H 1.08996 * 109.58444 * 6.57619 * 8 7 5 34 34 H 1.09010 * 109.49397 * 174.58717 * 9 8 7 35 35 H 1.09002 * 109.49859 * 294.64812 * 9 8 7 36 36 H 1.09006 * 109.45987 * 58.65205 * 10 9 8 37 37 H 1.09003 * 109.46376 * 178.62787 * 10 9 8 38 38 H 1.08994 * 109.46088 * 301.33576 * 15 13 11 39 39 H 1.08999 * 109.46365 * 61.30049 * 15 13 11 40 40 H 1.09000 * 109.49880 * 178.71716 * 16 15 13 41 41 H 1.09006 * 109.49547 * 58.65097 * 16 15 13 42 42 H 1.08999 * 109.58894 * 294.83644 * 17 16 15 43 43 H 1.09001 * 109.58727 * 174.40453 * 17 16 15 44 44 H 0.97004 * 119.99860 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.59102 * 293.82619 * 27 18 17 46 46 H 1.08998 * 109.58400 * 173.39647 * 27 18 17 47 47 H 1.09005 * 109.58736 * 353.42494 * 28 7 5 48 48 H 1.08999 * 109.58514 * 113.84207 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.2801 -1.4076 1.8777 7 7 3.3161 -0.5664 1.6148 8 6 3.8398 -1.3094 2.7691 9 6 5.0957 -2.0722 2.3359 10 6 6.0934 -1.0927 1.7138 11 6 5.4704 -0.4451 0.4751 12 1 5.1964 -1.2196 -0.2414 13 6 6.4807 0.5087 -0.1654 14 1 6.7538 1.2838 0.5507 15 6 7.7316 -0.2720 -0.5750 16 6 8.7558 0.6867 -1.1866 17 6 8.1585 1.3357 -2.4391 18 7 6.8804 1.9661 -2.0813 19 6 6.6470 3.2838 -2.3718 20 1 5.9733 3.8613 -1.7562 21 6 7.2762 3.8772 -3.4577 22 7 7.8290 3.1281 -4.3880 23 14 7.3382 5.7388 -3.5984 24 1 6.6493 6.3466 -2.4317 25 1 8.7540 6.1864 -3.6249 26 1 6.6613 6.1634 -4.8500 27 6 5.8575 1.1557 -1.4064 28 6 4.2202 0.3318 0.8837 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0929 -0.6124 3.5680 33 1 3.0872 -2.0147 3.1216 34 1 5.5486 -2.5503 3.2046 35 1 4.8251 -2.8317 1.6024 36 1 6.3445 -0.3197 2.4402 37 1 6.9980 -1.6289 1.4268 38 1 8.1629 -0.7531 0.3027 39 1 7.4618 -1.0310 -1.3093 40 1 9.6554 0.1338 -1.4572 41 1 9.0086 1.4602 -0.4613 42 1 7.9896 0.5739 -3.2003 43 1 8.8444 2.0916 -2.8215 44 1 8.2691 3.5427 -5.1465 45 1 5.5011 0.3793 -2.0833 46 1 5.0253 1.7929 -1.1074 47 1 3.7185 0.7091 -0.0075 48 1 4.5049 1.1654 1.5257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053000362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:04 Heat of formation + Delta-G solvation = -120.510855 kcal Electronic energy + Delta-G solvation = -30877.344812 eV Core-core repulsion = 26603.150863 eV Total energy + Delta-G solvation = -4274.193950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -49.44440 -47.33576 -40.40801 -38.67601 -36.87259 -33.97351 -32.75155 -31.90501 -31.58615 -30.38880 -28.29407 -26.57064 -25.30787 -24.25276 -23.43436 -21.98090 -21.31707 -20.34089 -19.75392 -19.05906 -18.14284 -17.93507 -17.11728 -16.62309 -15.98048 -15.26668 -15.14742 -14.80774 -14.58869 -14.30102 -14.19228 -13.96776 -13.63958 -13.56934 -13.54425 -13.24511 -13.09564 -13.04840 -12.81192 -12.67089 -12.54124 -12.41963 -12.19333 -12.01414 -11.65122 -11.33668 -11.09552 -10.95862 -10.87114 -10.83581 -10.43450 -10.33290 -10.14034 -10.11221 -10.01813 -9.83258 -9.49208 -9.29207 -8.87861 -8.43747 -6.62224 -5.75577 -3.18418 1.90902 2.36904 3.38429 3.42631 3.46406 3.48527 3.69733 4.14378 4.35205 4.49890 4.62847 4.74238 4.79438 4.89544 5.14426 5.18931 5.23571 5.31913 5.39243 5.41903 5.52228 5.58415 5.60068 5.62633 5.68660 5.70857 5.73625 5.87461 5.90218 6.05729 6.12267 6.17397 6.21931 6.40667 6.43848 6.46866 6.65468 6.73022 6.83866 6.91432 6.94990 7.03820 7.43699 7.53180 7.70988 7.82841 8.48573 9.24907 9.88410 10.45451 11.32694 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.004108 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.949918 B = 6814.882609 C = 8265.469490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.280 3.720 3 F -0.179 7.179 4 F -0.178 7.178 5 C 0.488 3.512 6 O -0.515 6.515 7 N -0.588 5.588 8 C 0.109 3.891 9 C -0.134 4.134 10 C -0.117 4.117 11 C -0.094 4.094 12 H 0.073 0.927 13 C -0.095 4.095 14 H 0.069 0.931 15 C -0.102 4.102 16 C -0.143 4.143 17 C 0.170 3.830 18 N -0.591 5.591 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.151 3.849 28 C 0.087 3.913 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.016 0.984 43 H 0.085 0.915 44 H 0.252 0.748 45 H 0.017 0.983 46 H 0.052 0.948 47 H 0.107 0.893 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 -9.699 13.181 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.240 3.760 3 F -0.160 7.160 4 F -0.159 7.159 5 C 0.271 3.729 6 O -0.391 6.391 7 N -0.319 5.319 8 C -0.013 4.013 9 C -0.172 4.172 10 C -0.155 4.155 11 C -0.113 4.113 12 H 0.092 0.908 13 C -0.116 4.116 14 H 0.087 0.913 15 C -0.139 4.139 16 C -0.182 4.182 17 C 0.044 3.956 18 N -0.313 5.313 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.024 3.976 28 C -0.034 4.034 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.125 0.875 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.711 -9.972 13.351 18.804 hybrid contribution 0.355 1.056 -0.373 1.175 sum -8.357 -8.916 12.977 17.825 Atomic orbital electron populations 1.22609 0.88866 1.06529 1.05737 1.21332 0.95737 0.75940 0.82963 1.93024 1.89569 1.36777 1.96633 1.93122 1.90434 1.80636 1.51716 1.20788 0.83019 0.82871 0.86267 1.90735 1.55056 1.39309 1.54033 1.48246 1.09377 1.43610 1.30696 1.21747 0.96555 0.95839 0.87176 1.21934 0.95404 0.98473 1.01377 1.21664 0.98276 0.98472 0.97073 1.21468 0.94510 0.98311 0.97052 0.90818 1.21664 0.94578 0.96496 0.98879 0.91283 1.21458 0.95661 0.97705 0.99107 1.22186 0.97004 0.98149 1.00852 1.20779 0.87981 0.95954 0.90860 1.44031 1.11072 1.08024 1.68194 1.19220 1.26199 0.85414 1.07130 0.91706 1.25037 1.01735 0.97883 0.94976 1.70044 1.40895 1.33506 1.10291 0.86257 0.77387 0.85849 0.77507 1.20254 1.21623 1.21745 1.20958 0.91670 0.93721 0.91210 1.22462 0.91159 0.91860 0.97940 0.88841 0.88992 0.88320 0.90876 0.89000 0.90557 0.91463 0.91700 0.90872 0.93486 0.92914 0.93487 0.92864 0.96601 0.89638 0.93757 0.96560 0.92968 0.87490 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 8.80 37.16 0.33 -1.37 16 2 C 0.28 3.51 1.78 -27.88 -0.05 3.46 16 3 F -0.18 -2.42 14.12 2.25 0.03 -2.39 16 4 F -0.18 -2.51 16.80 2.25 0.04 -2.47 16 5 C 0.49 6.47 7.19 -10.99 -0.08 6.39 16 6 O -0.52 -7.54 15.42 5.55 0.09 -7.45 16 7 N -0.59 -7.26 2.98 -173.03 -0.52 -7.78 16 8 C 0.11 1.11 6.43 -3.71 -0.02 1.09 16 9 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 10 C -0.12 -1.25 4.86 -26.69 -0.13 -1.38 16 11 C -0.09 -1.23 1.91 -90.72 -0.17 -1.40 16 12 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 13 C -0.10 -1.54 1.93 -90.50 -0.17 -1.72 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 15 C -0.10 -1.64 4.86 -26.69 -0.13 -1.77 16 16 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 17 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 18 N -0.59 -14.68 2.99 -172.31 -0.52 -15.19 16 19 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 20 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 21 C 0.00 0.06 4.93 -17.43 -0.09 -0.03 16 22 N -0.90 -26.26 11.18 55.49 0.62 -25.64 16 23 Si 0.90 21.69 29.58 -169.99 -5.03 16.66 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C 0.15 3.09 5.28 -3.71 -0.02 3.07 16 28 C 0.09 1.14 4.57 -3.93 -0.02 1.12 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.89 7.93 -51.93 -0.41 0.47 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.97 7.02 -51.93 -0.36 0.60 16 34 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.78 6.33 -51.93 -0.33 0.45 16 38 H 0.05 0.65 6.33 -51.93 -0.33 0.32 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.29 6.06 -51.93 -0.31 1.97 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.05 1.06 6.69 -51.93 -0.35 0.71 16 47 H 0.11 1.56 3.38 -51.93 -0.18 1.38 16 48 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -30.48 367.91 -8.52 -39.00 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.74 Total: -0.54 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.04 Total: 0.24 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.41 Total: -48.60 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.09 Total: -7.45 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.07 Total: -4.85 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.48 -8.52 -39.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053000362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.506 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds