Wall clock time and date at job start Tue Mar 31 2020 16:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39896 * 109.46693 * 2 1 4 4 F 1.39898 * 109.46696 * 239.99956 * 2 1 3 5 5 C 1.50694 * 109.46921 * 119.99894 * 2 1 3 6 6 O 1.21286 * 120.00459 * 15.47331 * 5 2 1 7 7 N 1.34777 * 119.99951 * 195.75238 * 5 2 1 8 8 C 1.46927 * 120.63482 * 183.34871 * 7 5 2 9 9 C 1.53191 * 108.77577 * 126.36478 * 8 7 5 10 10 C 1.53036 * 109.31543 * 54.63759 * 9 8 7 11 11 C 1.53038 * 109.53760 * 298.63269 * 10 9 8 12 12 H 1.09004 * 109.49811 * 301.41274 * 11 10 9 13 13 C 1.52996 * 109.50077 * 181.34874 * 11 10 9 14 14 H 1.09006 * 109.49478 * 300.00124 * 13 11 10 15 15 C 1.53040 * 109.49678 * 60.06392 * 13 11 10 16 16 C 1.53041 * 109.53958 * 181.28666 * 15 13 11 17 17 C 1.53192 * 109.33951 * 298.68367 * 16 15 13 18 18 N 1.46932 * 108.77481 * 54.61911 * 17 16 15 19 19 C 1.36934 * 120.63180 * 126.41551 * 18 17 16 20 20 H 1.07996 * 119.99859 * 208.30624 * 19 18 17 21 21 C 1.38819 * 119.99986 * 28.30475 * 19 18 17 22 22 N 1.31615 * 119.99911 * 16.45043 * 21 19 18 23 23 Si 1.86798 * 119.99848 * 196.45050 * 21 19 18 24 24 H 1.48497 * 109.47313 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47239 * 120.00159 * 23 21 19 26 26 H 1.48499 * 109.46931 * 239.99957 * 23 21 19 27 27 C 1.46925 * 118.73787 * 306.38812 * 18 17 16 28 28 C 1.46928 * 120.63026 * 3.06160 * 7 5 2 29 29 H 1.09000 * 109.47333 * 299.99853 * 1 2 3 30 30 H 1.08995 * 109.47480 * 60.00125 * 1 2 3 31 31 H 1.09000 * 109.47162 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.58385 * 246.15175 * 8 7 5 33 33 H 1.08996 * 109.58444 * 6.57619 * 8 7 5 34 34 H 1.09010 * 109.49397 * 174.58717 * 9 8 7 35 35 H 1.09002 * 109.49859 * 294.64812 * 9 8 7 36 36 H 1.09006 * 109.45987 * 58.65205 * 10 9 8 37 37 H 1.09003 * 109.46376 * 178.62787 * 10 9 8 38 38 H 1.08994 * 109.46088 * 301.33576 * 15 13 11 39 39 H 1.08999 * 109.46365 * 61.30049 * 15 13 11 40 40 H 1.09000 * 109.49880 * 178.71716 * 16 15 13 41 41 H 1.09006 * 109.49547 * 58.65097 * 16 15 13 42 42 H 1.08999 * 109.58894 * 294.83644 * 17 16 15 43 43 H 1.09001 * 109.58727 * 174.40453 * 17 16 15 44 44 H 0.97004 * 119.99860 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.59102 * 293.82619 * 27 18 17 46 46 H 1.08998 * 109.58400 * 173.39647 * 27 18 17 47 47 H 1.09005 * 109.58736 * 353.42494 * 28 7 5 48 48 H 1.08999 * 109.58514 * 113.84207 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.2801 -1.4076 1.8777 7 7 3.3161 -0.5664 1.6148 8 6 3.8398 -1.3094 2.7691 9 6 5.0957 -2.0722 2.3359 10 6 6.0934 -1.0927 1.7138 11 6 5.4704 -0.4451 0.4751 12 1 5.1964 -1.2196 -0.2414 13 6 6.4807 0.5087 -0.1654 14 1 6.7538 1.2838 0.5507 15 6 7.7316 -0.2720 -0.5750 16 6 8.7558 0.6867 -1.1866 17 6 8.1585 1.3357 -2.4391 18 7 6.8804 1.9661 -2.0813 19 6 6.6470 3.2838 -2.3718 20 1 5.9733 3.8613 -1.7562 21 6 7.2762 3.8772 -3.4577 22 7 7.8290 3.1281 -4.3880 23 14 7.3382 5.7388 -3.5984 24 1 6.6493 6.3466 -2.4317 25 1 8.7540 6.1864 -3.6249 26 1 6.6613 6.1634 -4.8500 27 6 5.8575 1.1557 -1.4064 28 6 4.2202 0.3318 0.8837 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0929 -0.6124 3.5680 33 1 3.0872 -2.0147 3.1216 34 1 5.5486 -2.5503 3.2046 35 1 4.8251 -2.8317 1.6024 36 1 6.3445 -0.3197 2.4402 37 1 6.9980 -1.6289 1.4268 38 1 8.1629 -0.7531 0.3027 39 1 7.4618 -1.0310 -1.3093 40 1 9.6554 0.1338 -1.4572 41 1 9.0086 1.4602 -0.4613 42 1 7.9896 0.5739 -3.2003 43 1 8.8444 2.0916 -2.8215 44 1 8.2691 3.5427 -5.1465 45 1 5.5011 0.3793 -2.0833 46 1 5.0253 1.7929 -1.1074 47 1 3.7185 0.7091 -0.0075 48 1 4.5049 1.1654 1.5257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053000362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:02 Heat of formation + Delta-G solvation = -136.882671 kcal Electronic energy + Delta-G solvation = -30878.054748 eV Core-core repulsion = 26603.150863 eV Total energy + Delta-G solvation = -4274.903885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -50.47948 -48.38923 -41.42898 -39.94482 -38.23380 -35.51232 -33.92752 -33.22675 -32.52446 -32.20834 -29.67317 -27.66145 -27.02136 -25.37022 -24.64530 -23.56998 -22.49465 -21.62730 -20.75136 -20.55297 -19.16737 -18.95962 -18.59144 -18.11768 -16.99226 -16.82481 -16.30538 -16.08689 -15.74918 -15.68964 -15.39211 -15.23835 -14.92075 -14.81578 -14.69043 -14.59379 -14.37438 -14.14273 -13.96765 -13.88087 -13.64061 -13.49071 -13.36527 -13.16484 -12.99740 -12.90593 -12.70864 -12.39666 -12.29106 -11.99411 -11.94065 -11.78084 -11.76033 -11.54265 -11.39430 -11.17024 -11.01806 -10.77230 -10.52046 -9.87244 -8.64566 -7.85503 -5.31702 0.87951 1.42520 1.45813 1.47527 1.58162 2.42628 2.51757 2.79269 3.21933 3.28806 3.41413 3.60445 3.64622 3.83145 3.93441 4.01908 4.18634 4.22174 4.27716 4.36894 4.44782 4.47789 4.53340 4.54040 4.64885 4.75150 4.77003 4.80805 4.88552 4.89890 4.92433 4.95081 5.05660 5.07752 5.10482 5.24338 5.32309 5.37394 5.38610 5.43941 5.55188 5.59980 5.69348 5.81329 5.93539 6.40941 6.53090 7.16883 7.88633 8.40377 9.20474 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.004108 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.949918 B = 6814.882609 C = 8265.469490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.271 3.729 3 F -0.187 7.187 4 F -0.191 7.191 5 C 0.484 3.516 6 O -0.531 6.531 7 N -0.587 5.587 8 C 0.103 3.897 9 C -0.126 4.126 10 C -0.112 4.112 11 C -0.084 4.084 12 H 0.062 0.938 13 C -0.081 4.081 14 H 0.070 0.930 15 C -0.096 4.096 16 C -0.132 4.132 17 C 0.174 3.826 18 N -0.609 5.609 19 C -0.259 4.259 20 H 0.066 0.934 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.266 1.266 25 H -0.289 1.289 26 H -0.293 1.293 27 C 0.150 3.850 28 C 0.090 3.910 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.052 0.948 42 H -0.011 1.011 43 H 0.050 0.950 44 H 0.249 0.751 45 H 0.000 1.000 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 -10.248 15.760 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.232 3.768 3 F -0.168 7.168 4 F -0.172 7.172 5 C 0.267 3.733 6 O -0.409 6.409 7 N -0.317 5.317 8 C -0.018 4.018 9 C -0.164 4.164 10 C -0.150 4.150 11 C -0.104 4.104 12 H 0.080 0.920 13 C -0.102 4.102 14 H 0.088 0.912 15 C -0.134 4.134 16 C -0.171 4.171 17 C 0.049 3.951 18 N -0.333 5.333 19 C -0.390 4.390 20 H 0.083 0.917 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.216 1.216 26 H -0.220 1.220 27 C 0.025 3.975 28 C -0.032 4.032 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.007 0.993 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.018 0.982 46 H 0.066 0.934 47 H 0.106 0.894 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.638 -10.539 15.964 20.989 hybrid contribution 0.296 1.204 -1.203 1.727 sum -8.343 -9.335 14.761 19.355 Atomic orbital electron populations 1.22661 0.86467 1.07230 1.06967 1.21685 0.97444 0.75358 0.82325 1.93005 1.89883 1.37317 1.96626 1.93090 1.90783 1.80904 1.52452 1.20897 0.83280 0.82760 0.86334 1.90722 1.55448 1.40074 1.54610 1.48331 1.08979 1.43385 1.31024 1.21974 0.96865 0.96138 0.86789 1.21896 0.94572 0.97751 1.02143 1.21640 0.98607 0.98942 0.95769 1.21336 0.93803 0.97234 0.98044 0.91982 1.21448 0.95198 0.96930 0.96576 0.91199 1.21441 0.94769 0.96859 1.00295 1.22022 0.98243 0.98619 0.98204 1.20616 0.87395 0.94380 0.92744 1.44314 1.12425 1.07927 1.68589 1.19542 1.25716 0.86838 1.06855 0.91673 1.25789 1.01996 1.02008 0.94827 1.70202 1.42105 1.35113 1.10864 0.85249 0.77167 0.80853 0.77469 1.18981 1.21591 1.22047 1.21076 0.91096 0.92915 0.92432 1.22340 0.91049 0.92228 0.97569 0.87766 0.87640 0.87854 0.89087 0.89267 0.87704 0.92394 0.90529 0.90024 0.89607 0.93415 0.91495 0.92888 0.99272 0.93143 0.94216 0.98157 0.93370 0.89390 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 8.80 71.98 0.63 -2.52 16 2 C 0.27 6.72 1.78 29.85 0.05 6.77 16 3 F -0.19 -5.06 14.12 44.97 0.64 -4.42 16 4 F -0.19 -5.45 16.80 44.97 0.76 -4.70 16 5 C 0.48 12.43 7.19 87.66 0.63 13.06 16 6 O -0.53 -14.98 15.42 -3.05 -0.05 -15.03 16 7 N -0.59 -13.56 2.98 -819.74 -2.44 -16.01 16 8 C 0.10 1.82 6.43 86.36 0.55 2.37 16 9 C -0.13 -1.90 6.08 30.67 0.19 -1.72 16 10 C -0.11 -1.97 4.86 30.62 0.15 -1.82 16 11 C -0.08 -2.06 1.91 -10.86 -0.02 -2.08 16 12 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 13 C -0.08 -2.50 1.93 -10.72 -0.02 -2.52 16 14 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 15 C -0.10 -2.88 4.86 30.62 0.15 -2.73 16 16 C -0.13 -4.81 6.08 30.67 0.19 -4.62 16 17 C 0.17 8.52 5.30 86.36 0.46 8.98 16 18 N -0.61 -30.94 2.99 -699.08 -2.09 -33.03 16 19 C -0.26 -14.43 9.58 84.04 0.81 -13.63 16 20 H 0.07 3.55 7.88 -2.91 -0.02 3.52 16 21 C -0.05 -2.89 4.93 84.86 0.42 -2.47 16 22 N -0.94 -56.35 11.18 21.65 0.24 -56.11 16 23 Si 0.96 45.32 29.58 68.60 2.03 47.35 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 C 0.15 6.23 5.28 86.36 0.46 6.69 16 28 C 0.09 2.23 4.57 86.22 0.39 2.63 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.76 7.93 -2.39 -0.02 1.74 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.67 7.02 -2.39 -0.02 1.65 16 34 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.08 1.34 6.33 -2.39 -0.02 1.33 16 38 H 0.09 1.98 6.33 -2.39 -0.02 1.97 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 44 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 45 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.05 2.00 6.69 -2.39 -0.02 1.98 16 47 H 0.09 2.56 3.38 -2.38 -0.01 2.55 16 48 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -67.88 367.91 5.06 -62.81 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.95 Total: 12.74 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 5.03 Total: 6.39 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -4.29 Total: -105.15 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.05 Total: -15.03 kcal Atomic # 9 Polarization: -10.51 SS G_CDS: 1.39 Total: -9.12 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -67.88 5.06 -62.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053000362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.069 kcal (2) G-P(sol) polarization free energy of solvation -67.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds