Wall clock time and date at job start Tue Mar 31 2020 16:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39901 * 109.46788 * 2 1 4 4 F 1.39902 * 109.47141 * 240.00367 * 2 1 3 5 5 C 1.50699 * 109.47151 * 119.99938 * 2 1 3 6 6 O 1.21277 * 120.00041 * 345.02117 * 5 2 1 7 7 N 1.34775 * 119.99750 * 165.02097 * 5 2 1 8 8 C 1.46923 * 120.63171 * 358.94696 * 7 5 2 9 9 C 1.53201 * 108.77424 * 233.63095 * 8 7 5 10 10 C 1.53034 * 109.31041 * 305.36383 * 9 8 7 11 11 C 1.53350 * 109.61083 * 61.37572 * 10 9 8 12 12 C 1.46919 * 120.62919 * 178.96927 * 7 5 2 13 13 H 1.09003 * 109.58870 * 246.15500 * 12 7 5 14 14 C 1.52996 * 109.58987 * 6.43699 * 12 7 5 15 15 H 1.08997 * 109.50199 * 308.22225 * 14 12 7 16 16 C 1.53039 * 109.50097 * 188.15607 * 14 12 7 17 17 C 1.53043 * 109.53971 * 178.71746 * 16 14 12 18 18 C 1.53189 * 109.33955 * 61.31877 * 17 16 14 19 19 N 1.46924 * 108.77566 * 305.38008 * 18 17 16 20 20 C 1.36937 * 120.63536 * 233.63310 * 19 18 17 21 21 H 1.07999 * 120.00804 * 145.26680 * 20 19 18 22 22 C 1.38814 * 119.99707 * 325.26529 * 20 19 18 23 23 N 1.31626 * 119.99858 * 358.87188 * 22 20 19 24 24 Si 1.86796 * 120.00145 * 178.87033 * 22 20 19 25 25 H 1.48498 * 109.47419 * 89.99891 * 24 22 20 26 26 H 1.48506 * 109.47228 * 210.00416 * 24 22 20 27 27 H 1.48500 * 109.47311 * 329.99678 * 24 22 20 28 28 C 1.46929 * 118.73839 * 53.60936 * 19 18 17 29 29 H 1.09000 * 109.47281 * 299.99431 * 1 2 3 30 30 H 1.08993 * 109.47391 * 60.00017 * 1 2 3 31 31 H 1.09003 * 109.47240 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.58643 * 353.41580 * 8 7 5 33 33 H 1.09003 * 109.58664 * 113.84523 * 8 7 5 34 34 H 1.08996 * 109.49632 * 65.31425 * 9 8 7 35 35 H 1.09002 * 109.49535 * 185.38149 * 9 8 7 36 36 H 1.08999 * 109.46172 * 181.38925 * 10 9 8 37 37 H 1.09009 * 109.46358 * 301.34325 * 10 9 8 38 38 H 1.09000 * 109.68733 * 178.74512 * 11 10 9 39 39 H 1.08995 * 109.47183 * 58.54499 * 11 10 9 40 40 H 1.08999 * 109.46165 * 298.70318 * 16 14 12 41 41 H 1.09000 * 109.45900 * 58.66702 * 16 14 12 42 42 H 1.09004 * 109.47276 * 301.36437 * 17 16 14 43 43 H 1.08999 * 109.49938 * 181.28430 * 17 16 14 44 44 H 1.09001 * 109.58714 * 185.59778 * 18 17 16 45 45 H 1.09001 * 109.70758 * 65.23870 * 18 17 16 46 46 H 0.96999 * 119.99470 * 179.97438 * 23 22 20 47 47 H 1.09005 * 109.58606 * 186.60479 * 28 19 18 48 48 H 1.08993 * 109.59002 * 66.17982 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 1.2779 -0.9302 2.1542 7 7 3.3200 -1.1014 1.3043 8 6 4.2403 -0.8627 0.1841 9 6 4.8970 -2.1906 -0.2061 10 6 5.5564 -2.8109 1.0278 11 6 4.4905 -3.0940 2.0934 12 6 3.8301 -1.7748 2.5063 13 1 4.5642 -1.1371 2.9988 14 6 2.6723 -2.0591 3.4653 15 1 2.1075 -1.1425 3.6356 16 6 3.2259 -2.5726 4.7964 17 6 2.0705 -2.8269 5.7673 18 6 1.1434 -3.8974 5.1833 19 7 0.7215 -3.4762 3.8405 20 6 -0.6068 -3.4153 3.5134 21 1 -0.9630 -2.6488 2.8411 22 6 -1.4958 -4.3389 4.0462 23 7 -1.0583 -5.2866 4.8480 24 14 -3.3128 -4.2367 3.6251 25 1 -3.5858 -5.0465 2.4106 26 1 -4.1142 -4.7609 4.7601 27 1 -3.6830 -2.8214 3.3699 28 6 1.7520 -3.1210 2.8552 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.6857 -0.4656 -0.6662 33 1 5.0079 -0.1506 0.4872 34 1 4.1391 -2.8710 -0.5943 35 1 5.6521 -2.0119 -0.9716 36 1 6.0456 -3.7438 0.7478 37 1 6.2968 -2.1195 1.4302 38 1 4.9555 -3.5563 2.9641 39 1 3.7364 -3.7657 1.6835 40 1 3.7701 -3.5021 4.6291 41 1 3.9001 -1.8285 5.2206 42 1 1.5112 -1.9032 5.9164 43 1 2.4670 -3.1709 6.7226 44 1 0.2678 -4.0108 5.8226 45 1 1.6739 -4.8474 5.1184 46 1 -1.6795 -5.9317 5.2206 47 1 1.2780 -2.7220 1.9584 48 1 2.3344 -4.0063 2.6001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053063946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:20 Heat of formation + Delta-G solvation = -77.072269 kcal Electronic energy + Delta-G solvation = -32062.052171 eV Core-core repulsion = 27789.741860 eV Total energy + Delta-G solvation = -4272.310311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.39134 -47.28191 -40.79909 -37.65150 -36.92166 -33.51598 -32.88887 -31.74984 -31.23225 -30.19873 -28.32643 -25.96125 -25.13738 -24.22103 -23.42147 -21.97034 -21.11520 -20.89574 -19.45342 -18.82348 -17.86201 -17.42966 -16.80235 -16.54174 -15.63775 -15.21017 -14.98307 -14.79973 -14.65283 -14.33043 -14.01297 -13.76302 -13.62976 -13.57534 -13.29600 -13.24960 -13.09729 -12.68159 -12.52761 -12.42362 -12.29349 -12.13482 -12.05810 -11.82152 -11.55517 -11.10808 -11.05923 -10.80188 -10.75896 -10.58398 -10.37161 -10.36041 -10.11006 -9.90030 -9.71900 -9.33074 -9.22949 -8.75707 -8.36548 -8.26647 -6.32499 -5.61722 -3.10966 2.32983 2.65342 3.44378 3.50374 3.52328 3.59625 3.90101 4.31995 4.56226 4.60429 4.70526 4.83741 4.87026 5.09016 5.26177 5.28492 5.41233 5.46320 5.53655 5.57215 5.60590 5.68913 5.75163 5.81466 5.84328 5.90462 5.96578 5.97528 6.02389 6.10302 6.23973 6.36796 6.41804 6.51086 6.62830 6.71313 6.86217 6.89244 7.06184 7.12268 7.27972 7.38520 7.62701 7.93269 7.96397 8.08913 8.70750 9.42819 10.04620 10.64746 11.45582 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012119 B = 0.005467 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.941502 B = 5120.401111 C = 6532.651137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.276 3.724 3 F -0.189 7.189 4 F -0.186 7.186 5 C 0.465 3.535 6 O -0.443 6.443 7 N -0.589 5.589 8 C 0.081 3.919 9 C -0.131 4.131 10 C -0.120 4.120 11 C -0.138 4.138 12 C 0.155 3.845 13 H 0.068 0.932 14 C -0.114 4.114 15 H 0.110 0.890 16 C -0.106 4.106 17 C -0.140 4.140 18 C 0.169 3.831 19 N -0.586 5.586 20 C -0.232 4.232 21 H 0.063 0.937 22 C -0.001 4.001 23 N -0.911 5.911 24 Si 0.900 3.100 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.164 3.836 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.038 0.962 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.011 0.989 46 H 0.251 0.749 47 H 0.062 0.938 48 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.746 9.662 -9.834 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.237 3.763 3 F -0.170 7.170 4 F -0.167 7.167 5 C 0.247 3.753 6 O -0.315 6.315 7 N -0.323 5.323 8 C -0.042 4.042 9 C -0.169 4.169 10 C -0.157 4.157 11 C -0.176 4.176 12 C 0.052 3.948 13 H 0.086 0.914 14 C -0.134 4.134 15 H 0.127 0.873 16 C -0.144 4.144 17 C -0.180 4.180 18 C 0.043 3.957 19 N -0.307 5.307 20 C -0.363 4.363 21 H 0.080 0.920 22 C -0.198 4.198 23 N -0.557 5.557 24 Si 0.730 3.270 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.038 3.962 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.029 0.971 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 12.226 9.423 -9.265 18.003 hybrid contribution -0.583 0.025 -0.390 0.702 sum 11.643 9.448 -9.655 17.834 Atomic orbital electron populations 1.22605 0.88678 1.06945 1.05637 1.21717 0.96032 0.75856 0.82717 1.93050 1.90585 1.36744 1.96634 1.92890 1.89367 1.80956 1.53526 1.20672 0.83379 0.82412 0.88855 1.91017 1.55188 1.50471 1.34778 1.48022 1.08654 1.57884 1.17756 1.22301 0.93830 0.97941 0.90090 1.21857 1.00241 0.96795 0.98031 1.21597 0.97847 1.00684 0.95609 1.22197 0.98455 0.97780 0.99184 1.21502 0.96667 0.92486 0.84133 0.91416 1.22475 0.94386 1.03361 0.93148 0.87286 1.21542 0.97554 0.99270 0.96075 1.22172 0.97361 1.01672 0.96761 1.20837 0.96492 0.91123 0.87227 1.43873 1.01438 1.78168 1.07258 1.19185 0.83471 1.07837 1.25766 0.91963 1.25267 0.98339 0.95872 1.00316 1.69933 1.33225 1.17586 1.34949 0.86323 0.85630 0.77523 0.77519 1.21594 1.21834 1.20546 1.21264 0.89788 0.92169 0.92941 0.88043 0.89721 0.88238 0.87867 0.91449 0.91146 0.90896 0.91776 0.92160 0.90511 0.90084 0.93162 0.94293 0.93011 0.93821 0.89145 0.97060 0.93906 0.91963 0.97756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 8.79 37.16 0.33 -1.90 16 2 C 0.28 3.67 1.78 -27.88 -0.05 3.62 16 3 F -0.19 -2.47 16.95 2.25 0.04 -2.43 16 4 F -0.19 -2.35 14.08 2.25 0.03 -2.32 16 5 C 0.46 7.30 6.19 -10.99 -0.07 7.23 16 6 O -0.44 -8.51 9.39 5.56 0.05 -8.46 16 7 N -0.59 -8.20 2.95 -165.22 -0.49 -8.69 16 8 C 0.08 0.88 6.06 -3.71 -0.02 0.86 16 9 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 10 C -0.12 -1.22 5.89 -26.53 -0.16 -1.37 16 11 C -0.14 -1.82 4.69 -26.45 -0.12 -1.94 16 12 C 0.15 2.24 2.63 -67.60 -0.18 2.06 16 13 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 14 C -0.11 -2.09 1.57 -90.50 -0.14 -2.24 16 15 H 0.11 2.28 5.63 -53.64 -0.30 1.98 16 16 C -0.11 -1.89 4.96 -26.69 -0.13 -2.02 16 17 C -0.14 -2.89 6.08 -26.61 -0.16 -3.05 16 18 C 0.17 4.26 5.24 -3.71 -0.02 4.24 16 19 N -0.59 -15.34 2.99 -172.32 -0.52 -15.86 16 20 C -0.23 -6.62 9.56 -15.06 -0.14 -6.77 16 21 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 22 C 0.00 -0.02 5.23 -17.43 -0.09 -0.11 16 23 N -0.91 -27.22 10.80 55.49 0.60 -26.62 16 24 Si 0.90 22.42 29.55 -169.99 -5.02 17.40 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.16 3.62 4.43 -3.71 -0.02 3.61 16 29 H 0.10 1.30 7.94 -51.93 -0.41 0.89 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.10 1.11 4.43 -51.93 -0.23 0.88 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.08 0.98 7.00 -51.93 -0.36 0.62 16 39 H 0.08 1.25 5.89 -51.93 -0.31 0.94 16 40 H 0.05 0.87 6.89 -51.93 -0.36 0.52 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 2.56 6.05 -51.93 -0.31 2.24 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.06 1.43 4.93 -51.89 -0.26 1.17 16 48 H 0.00 0.11 5.90 -51.93 -0.31 -0.20 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -31.12 355.67 -8.55 -39.67 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.47 Total: 1.18 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.14 Total: 0.76 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.40 Total: -51.17 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.05 Total: -8.46 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.07 Total: -4.75 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.12 -8.55 -39.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053063946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.405 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds