Wall clock time and date at job start Tue Mar 31 2020 16:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39901 * 109.46788 * 2 1 4 4 F 1.39902 * 109.47141 * 240.00367 * 2 1 3 5 5 C 1.50699 * 109.47151 * 119.99938 * 2 1 3 6 6 O 1.21277 * 120.00041 * 345.02117 * 5 2 1 7 7 N 1.34775 * 119.99750 * 165.02097 * 5 2 1 8 8 C 1.46923 * 120.63171 * 358.94696 * 7 5 2 9 9 C 1.53201 * 108.77424 * 233.63095 * 8 7 5 10 10 C 1.53034 * 109.31041 * 305.36383 * 9 8 7 11 11 C 1.53350 * 109.61083 * 61.37572 * 10 9 8 12 12 C 1.46919 * 120.62919 * 178.96927 * 7 5 2 13 13 H 1.09003 * 109.58870 * 246.15500 * 12 7 5 14 14 C 1.52996 * 109.58987 * 6.43699 * 12 7 5 15 15 H 1.08997 * 109.50199 * 308.22225 * 14 12 7 16 16 C 1.53039 * 109.50097 * 188.15607 * 14 12 7 17 17 C 1.53043 * 109.53971 * 178.71746 * 16 14 12 18 18 C 1.53189 * 109.33955 * 61.31877 * 17 16 14 19 19 N 1.46924 * 108.77566 * 305.38008 * 18 17 16 20 20 C 1.36937 * 120.63536 * 233.63310 * 19 18 17 21 21 H 1.07999 * 120.00804 * 145.26680 * 20 19 18 22 22 C 1.38814 * 119.99707 * 325.26529 * 20 19 18 23 23 N 1.31626 * 119.99858 * 358.87188 * 22 20 19 24 24 Si 1.86796 * 120.00145 * 178.87033 * 22 20 19 25 25 H 1.48498 * 109.47419 * 89.99891 * 24 22 20 26 26 H 1.48506 * 109.47228 * 210.00416 * 24 22 20 27 27 H 1.48500 * 109.47311 * 329.99678 * 24 22 20 28 28 C 1.46929 * 118.73839 * 53.60936 * 19 18 17 29 29 H 1.09000 * 109.47281 * 299.99431 * 1 2 3 30 30 H 1.08993 * 109.47391 * 60.00017 * 1 2 3 31 31 H 1.09003 * 109.47240 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.58643 * 353.41580 * 8 7 5 33 33 H 1.09003 * 109.58664 * 113.84523 * 8 7 5 34 34 H 1.08996 * 109.49632 * 65.31425 * 9 8 7 35 35 H 1.09002 * 109.49535 * 185.38149 * 9 8 7 36 36 H 1.08999 * 109.46172 * 181.38925 * 10 9 8 37 37 H 1.09009 * 109.46358 * 301.34325 * 10 9 8 38 38 H 1.09000 * 109.68733 * 178.74512 * 11 10 9 39 39 H 1.08995 * 109.47183 * 58.54499 * 11 10 9 40 40 H 1.08999 * 109.46165 * 298.70318 * 16 14 12 41 41 H 1.09000 * 109.45900 * 58.66702 * 16 14 12 42 42 H 1.09004 * 109.47276 * 301.36437 * 17 16 14 43 43 H 1.08999 * 109.49938 * 181.28430 * 17 16 14 44 44 H 1.09001 * 109.58714 * 185.59778 * 18 17 16 45 45 H 1.09001 * 109.70758 * 65.23870 * 18 17 16 46 46 H 0.96999 * 119.99470 * 179.97438 * 23 22 20 47 47 H 1.09005 * 109.58606 * 186.60479 * 28 19 18 48 48 H 1.08993 * 109.59002 * 66.17982 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 1.2779 -0.9302 2.1542 7 7 3.3200 -1.1014 1.3043 8 6 4.2403 -0.8627 0.1841 9 6 4.8970 -2.1906 -0.2061 10 6 5.5564 -2.8109 1.0278 11 6 4.4905 -3.0940 2.0934 12 6 3.8301 -1.7748 2.5063 13 1 4.5642 -1.1371 2.9988 14 6 2.6723 -2.0591 3.4653 15 1 2.1075 -1.1425 3.6356 16 6 3.2259 -2.5726 4.7964 17 6 2.0705 -2.8269 5.7673 18 6 1.1434 -3.8974 5.1833 19 7 0.7215 -3.4762 3.8405 20 6 -0.6068 -3.4153 3.5134 21 1 -0.9630 -2.6488 2.8411 22 6 -1.4958 -4.3389 4.0462 23 7 -1.0583 -5.2866 4.8480 24 14 -3.3128 -4.2367 3.6251 25 1 -3.5858 -5.0465 2.4106 26 1 -4.1142 -4.7609 4.7601 27 1 -3.6830 -2.8214 3.3699 28 6 1.7520 -3.1210 2.8552 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.6857 -0.4656 -0.6662 33 1 5.0079 -0.1506 0.4872 34 1 4.1391 -2.8710 -0.5943 35 1 5.6521 -2.0119 -0.9716 36 1 6.0456 -3.7438 0.7478 37 1 6.2968 -2.1195 1.4302 38 1 4.9555 -3.5563 2.9641 39 1 3.7364 -3.7657 1.6835 40 1 3.7701 -3.5021 4.6291 41 1 3.9001 -1.8285 5.2206 42 1 1.5112 -1.9032 5.9164 43 1 2.4670 -3.1709 6.7226 44 1 0.2678 -4.0108 5.8226 45 1 1.6739 -4.8474 5.1184 46 1 -1.6795 -5.9317 5.2206 47 1 1.2780 -2.7220 1.9584 48 1 2.3344 -4.0063 2.6001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053063946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:18 Heat of formation + Delta-G solvation = -94.689479 kcal Electronic energy + Delta-G solvation = -32062.816111 eV Core-core repulsion = 27789.741860 eV Total energy + Delta-G solvation = -4273.074251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -50.45199 -48.33353 -42.03932 -38.97085 -38.39154 -35.29158 -33.92766 -33.21978 -32.41637 -32.13330 -29.68847 -27.24457 -27.08137 -25.21185 -24.72570 -23.77877 -22.50002 -22.03009 -20.74134 -20.28261 -18.96709 -18.65512 -18.46769 -17.88101 -16.92458 -16.75881 -16.40066 -16.10137 -15.75788 -15.63877 -15.59669 -15.05697 -14.92691 -14.76142 -14.63801 -14.46341 -14.23662 -14.14355 -13.93522 -13.80962 -13.56971 -13.45301 -13.24436 -13.07344 -12.93470 -12.79604 -12.75694 -12.26889 -12.13743 -12.09483 -11.88218 -11.66766 -11.61421 -11.57820 -11.32437 -11.06545 -10.89607 -10.50492 -10.04533 -9.53148 -8.43122 -7.80031 -5.33103 1.13329 1.42995 1.44127 1.53759 1.54839 2.51185 2.52270 2.83528 3.28175 3.33280 3.50090 3.67911 3.83191 3.92844 3.97873 4.08615 4.17619 4.25652 4.30725 4.35151 4.48081 4.55441 4.57117 4.57824 4.67415 4.79264 4.82413 4.90162 4.95706 4.98515 5.00335 5.06370 5.08371 5.16672 5.23229 5.25066 5.38628 5.43905 5.45194 5.52285 5.60886 5.68485 5.80536 5.92114 6.19741 6.52289 6.87903 7.24435 7.97232 8.50231 9.24220 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012119 B = 0.005467 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.941502 B = 5120.401111 C = 6532.651137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.286 3.714 3 F -0.184 7.184 4 F -0.181 7.181 5 C 0.456 3.544 6 O -0.489 6.489 7 N -0.587 5.587 8 C 0.076 3.924 9 C -0.128 4.128 10 C -0.113 4.113 11 C -0.135 4.135 12 C 0.158 3.842 13 H 0.094 0.906 14 C -0.102 4.102 15 H 0.087 0.913 16 C -0.101 4.101 17 C -0.131 4.131 18 C 0.175 3.825 19 N -0.605 5.605 20 C -0.242 4.242 21 H 0.055 0.945 22 C -0.054 4.054 23 N -0.940 5.940 24 Si 0.965 3.035 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.272 1.272 28 C 0.171 3.829 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.066 0.934 44 H 0.053 0.947 45 H -0.010 1.010 46 H 0.247 0.753 47 H 0.050 0.950 48 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.038 11.166 -11.126 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.246 3.754 3 F -0.165 7.165 4 F -0.162 7.162 5 C 0.239 3.761 6 O -0.364 6.364 7 N -0.320 5.320 8 C -0.045 4.045 9 C -0.166 4.166 10 C -0.150 4.150 11 C -0.173 4.173 12 C 0.055 3.945 13 H 0.112 0.888 14 C -0.122 4.122 15 H 0.105 0.895 16 C -0.139 4.139 17 C -0.170 4.170 18 C 0.050 3.950 19 N -0.327 5.327 20 C -0.373 4.373 21 H 0.072 0.928 22 C -0.248 4.248 23 N -0.587 5.587 24 Si 0.793 3.207 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.196 1.196 28 C 0.047 3.953 29 H 0.111 0.889 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.008 0.992 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 14.573 10.947 -10.595 21.082 hybrid contribution -1.251 -0.435 -0.030 1.325 sum 13.322 10.511 -10.625 20.021 Atomic orbital electron populations 1.22601 0.88158 1.06276 1.06680 1.21446 0.96273 0.75723 0.81923 1.93059 1.90570 1.36313 1.96585 1.92906 1.89378 1.80904 1.52989 1.21123 0.83684 0.82169 0.89109 1.91008 1.56331 1.52541 1.36479 1.48205 1.08600 1.56762 1.18416 1.22566 0.93773 0.99181 0.89024 1.21866 1.00420 0.95634 0.98694 1.21573 0.97054 1.01872 0.94535 1.22145 0.98567 0.96213 1.00405 1.21448 0.95302 0.93877 0.83849 0.88836 1.22166 0.94913 1.00749 0.94358 0.89526 1.21512 0.96754 1.00632 0.95024 1.22005 0.97414 0.99206 0.98372 1.20620 0.95715 0.91938 0.86773 1.44136 1.01675 1.78439 1.08493 1.19384 0.85040 1.07581 1.25328 0.92769 1.25991 1.02562 0.95758 1.00503 1.70122 1.34336 1.18307 1.35936 0.85307 0.80515 0.77794 0.77117 1.21082 1.21800 1.19648 1.21302 0.89247 0.92765 0.92027 0.88869 0.86802 0.89749 0.87831 0.89003 0.93039 0.87878 0.90667 0.90023 0.89988 0.93184 0.92498 0.90789 0.94246 0.91553 0.92836 0.99183 0.94344 0.93187 0.98644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.38 8.79 71.98 0.63 -3.75 16 2 C 0.29 7.35 1.78 29.85 0.05 7.40 16 3 F -0.18 -4.49 16.95 44.97 0.76 -3.73 16 4 F -0.18 -4.31 14.08 44.97 0.63 -3.67 16 5 C 0.46 14.22 6.19 87.66 0.54 14.76 16 6 O -0.49 -19.33 9.39 -3.02 -0.03 -19.36 16 7 N -0.59 -15.39 2.95 -795.03 -2.34 -17.74 16 8 C 0.08 1.41 6.06 86.37 0.52 1.93 16 9 C -0.13 -2.11 6.08 30.67 0.19 -1.92 16 10 C -0.11 -1.89 5.89 30.72 0.18 -1.71 16 11 C -0.14 -3.29 4.69 30.78 0.14 -3.14 16 12 C 0.16 4.26 2.63 44.98 0.12 4.37 16 13 H 0.09 2.13 8.13 -2.39 -0.02 2.11 16 14 C -0.10 -3.72 1.57 -10.72 -0.02 -3.74 16 15 H 0.09 3.66 5.63 -30.40 -0.17 3.49 16 16 C -0.10 -3.45 4.96 30.62 0.15 -3.30 16 17 C -0.13 -5.39 6.08 30.67 0.19 -5.20 16 18 C 0.18 9.21 5.24 86.36 0.45 9.66 16 19 N -0.60 -33.06 2.99 -699.09 -2.09 -35.15 16 20 C -0.24 -14.41 9.56 84.03 0.80 -13.61 16 21 H 0.05 3.25 7.83 -2.91 -0.02 3.23 16 22 C -0.05 -3.20 5.23 84.86 0.44 -2.76 16 23 N -0.94 -58.42 10.80 21.65 0.23 -58.19 16 24 Si 0.96 47.47 29.55 68.60 2.03 49.50 16 25 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 28 C 0.17 7.81 4.43 86.36 0.38 8.19 16 29 H 0.09 2.43 7.94 -2.39 -0.02 2.41 16 30 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.10 1.95 4.43 -2.38 -0.01 1.94 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.08 1.90 7.00 -2.39 -0.02 1.89 16 39 H 0.05 1.53 5.89 -2.39 -0.01 1.52 16 40 H 0.06 1.88 6.89 -2.39 -0.02 1.86 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.05 3.18 6.05 -2.39 -0.01 3.17 16 45 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 46 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 47 H 0.05 2.40 4.93 -2.72 -0.01 2.39 16 48 H 0.00 -0.19 5.90 -2.39 -0.01 -0.20 16 Total: -1.00 -71.18 355.67 4.78 -66.39 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.80 Total: 14.75 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 4.79 Total: 7.19 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -4.20 Total: -111.08 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.03 Total: -19.36 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 1.40 Total: -7.40 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -71.18 4.78 -66.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053063946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.295 kcal (2) G-P(sol) polarization free energy of solvation -71.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds