Wall clock time and date at job start Tue Mar 31 2020 17:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.64072 * 2 1 4 4 C 1.54321 * 110.72060 * 123.14444 * 2 1 3 5 5 N 1.47017 * 107.27208 * 140.55636 * 4 2 1 6 6 C 1.34773 * 125.65337 * 181.02100 * 5 4 2 7 7 O 1.21288 * 119.99305 * 4.65187 * 6 5 4 8 8 C 1.50698 * 120.00548 * 184.65166 * 6 5 4 9 9 C 1.53001 * 109.46888 * 290.22436 * 8 6 5 10 10 C 1.53005 * 109.47344 * 170.22577 * 8 6 5 11 11 C 1.53001 * 109.46991 * 300.00178 * 10 8 6 12 12 C 1.53001 * 109.47098 * 299.99907 * 11 10 8 13 13 F 1.39907 * 109.47172 * 300.00371 * 12 11 10 14 14 F 1.39896 * 109.47265 * 180.02562 * 12 11 10 15 15 C 1.53005 * 109.47124 * 60.00174 * 12 11 10 16 16 C 1.53001 * 109.46953 * 50.22542 * 8 6 5 17 17 C 1.47428 * 108.70369 * 1.28485 * 5 4 2 18 18 C 1.55130 * 104.72024 * 335.55605 * 17 5 4 19 19 H 1.08999 * 110.93644 * 155.28727 * 18 17 5 20 20 N 1.46505 * 111.18889 * 279.18908 * 18 17 5 21 21 C 1.36938 * 119.99870 * 267.18287 * 20 18 17 22 22 H 1.07999 * 120.00259 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99848 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99815 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99972 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46716 * 90.00455 * 25 23 21 27 27 H 1.48499 * 109.47158 * 210.00190 * 25 23 21 28 28 H 1.48498 * 109.47247 * 330.00357 * 25 23 21 29 29 H 1.09002 * 109.47045 * 298.31311 * 1 2 3 30 30 H 1.09004 * 109.47078 * 58.30722 * 1 2 3 31 31 H 1.08994 * 109.47053 * 178.31324 * 1 2 3 32 32 H 1.08999 * 109.88165 * 21.13620 * 4 2 1 33 33 H 1.09006 * 109.88257 * 259.97263 * 4 2 1 34 34 H 1.08999 * 109.46669 * 187.45682 * 9 8 6 35 35 H 1.09000 * 109.47441 * 307.45452 * 9 8 6 36 36 H 1.08995 * 109.47138 * 67.45932 * 9 8 6 37 37 H 1.09001 * 109.46949 * 60.00032 * 10 8 6 38 38 H 1.08996 * 109.47135 * 180.02562 * 10 8 6 39 39 H 1.08994 * 109.47081 * 179.97438 * 11 10 8 40 40 H 1.08996 * 109.47271 * 59.99973 * 11 10 8 41 41 H 1.08997 * 109.47035 * 180.02562 * 15 12 11 42 42 H 1.08996 * 109.47135 * 60.00001 * 15 12 11 43 43 H 1.09004 * 109.46505 * 180.02562 * 16 8 6 44 44 H 1.08994 * 109.47097 * 300.00076 * 16 8 6 45 45 H 1.09000 * 110.36744 * 94.48248 * 17 5 4 46 46 H 1.09001 * 110.36823 * 216.80642 * 17 5 4 47 47 H 0.96993 * 119.99751 * 87.19493 * 20 18 17 48 48 H 0.97004 * 119.99687 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2445 -1.5495 0.7416 6 6 3.9923 -2.3810 1.4936 7 8 3.6706 -2.6172 2.6389 8 6 5.2281 -3.0174 0.9115 9 6 4.8220 -4.0493 -0.1426 10 6 6.0182 -3.7091 2.0244 11 6 6.4241 -2.6772 3.0786 12 6 7.2948 -1.5998 2.4289 13 9 8.4421 -2.1906 1.8884 14 9 7.6665 -0.6566 3.3929 15 6 6.5048 -0.9082 1.3160 16 6 6.0988 -1.9401 0.2618 17 6 3.4665 -1.2467 -0.6841 18 6 2.0789 -0.7974 -1.2125 19 1 2.1843 -0.1554 -2.0870 20 7 1.2271 -1.9514 -1.5112 21 6 1.2020 -2.4746 -2.7764 22 1 1.8105 -2.0369 -3.5540 23 6 0.3945 -3.5676 -3.0596 24 7 -0.3474 -4.1007 -2.1121 25 14 0.3608 -4.2818 -4.7853 26 1 1.4018 -5.3341 -4.9058 27 1 -0.9749 -4.8744 -5.0498 28 1 0.6289 -3.2050 -5.7720 29 1 -0.3633 0.4874 0.9047 30 1 -0.3633 0.5399 -0.8745 31 1 -0.3633 -1.0272 -0.0302 32 1 1.3129 -1.4732 1.5800 33 1 2.3741 -0.0990 1.9979 34 1 5.7032 -4.6022 -0.4681 35 1 4.0971 -4.7411 0.2863 36 1 4.3767 -3.5399 -0.9971 37 1 5.3979 -4.4766 2.4873 38 1 6.9122 -4.1689 1.6034 39 1 6.9866 -3.1699 3.8716 40 1 5.5303 -2.2169 3.4996 41 1 7.1252 -0.1410 0.8528 42 1 5.6109 -0.4479 1.7370 43 1 6.9924 -2.4005 -0.1596 44 1 5.5360 -1.4474 -0.5310 45 1 4.1946 -0.4428 -0.7923 46 1 3.8031 -2.1382 -1.2133 47 1 0.6808 -2.3445 -0.8128 48 1 -0.9120 -4.8642 -2.3101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054815031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:50 Heat of formation + Delta-G solvation = -128.392698 kcal Electronic energy + Delta-G solvation = -31303.618188 eV Core-core repulsion = 27029.082456 eV Total energy + Delta-G solvation = -4274.535732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.00962 -46.99131 -40.76486 -38.25778 -36.56134 -34.02886 -32.82766 -31.84762 -31.06091 -30.48235 -27.89993 -26.27808 -26.12185 -24.13245 -23.29960 -22.98376 -21.46287 -20.78858 -19.29115 -18.68559 -17.53252 -17.41739 -16.88480 -16.31041 -16.13858 -15.86166 -15.03805 -14.66791 -14.49251 -14.28595 -14.07239 -13.76758 -13.63995 -13.50103 -13.31014 -13.12133 -13.01161 -12.93836 -12.58266 -12.50888 -12.33900 -12.02307 -12.00789 -11.78606 -11.64668 -11.50532 -11.27505 -11.10535 -10.97621 -10.95241 -10.83190 -10.66645 -10.45560 -10.32473 -10.08364 -9.96836 -9.70907 -9.36400 -9.05266 -8.25230 -7.08941 -5.88718 -3.18900 2.89238 3.29588 3.35196 3.40958 3.43089 3.70844 4.01032 4.25353 4.28792 4.47343 4.56333 4.66163 4.85037 4.98021 5.04965 5.08714 5.13850 5.19454 5.28671 5.44435 5.50374 5.54364 5.55457 5.66075 5.70143 5.71109 5.73739 5.78269 5.88456 5.93481 5.93684 5.96593 6.07652 6.14095 6.16505 6.17013 6.28662 6.33084 6.39195 6.56467 6.59547 6.75845 6.90933 7.58184 7.88266 8.28623 8.45468 9.40834 9.95906 10.30510 11.32965 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.003950 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.448312 B = 7086.110911 C = 7865.166267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.078 0.922 4 C 0.115 3.885 5 N -0.598 5.598 6 C 0.540 3.460 7 O -0.551 6.551 8 C -0.076 4.076 9 C -0.146 4.146 10 C -0.091 4.091 11 C -0.165 4.165 12 C 0.287 3.713 13 F -0.202 7.202 14 F -0.206 7.206 15 C -0.158 4.158 16 C -0.123 4.123 17 C 0.056 3.944 18 C 0.171 3.829 19 H 0.074 0.926 20 N -0.706 5.706 21 C -0.249 4.249 22 H 0.072 0.928 23 C -0.006 4.006 24 N -0.927 5.927 25 Si 0.905 3.095 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.281 1.281 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.058 0.942 46 H 0.091 0.909 47 H 0.387 0.613 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.548 6.746 6.072 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.096 0.904 4 C -0.007 4.007 5 N -0.330 5.330 6 C 0.328 3.672 7 O -0.431 6.431 8 C -0.079 4.079 9 C -0.203 4.203 10 C -0.129 4.129 11 C -0.202 4.202 12 C 0.251 3.749 13 F -0.183 7.183 14 F -0.187 7.187 15 C -0.196 4.196 16 C -0.160 4.160 17 C -0.070 4.070 18 C 0.058 3.942 19 H 0.092 0.908 20 N -0.347 5.347 21 C -0.380 4.380 22 H 0.090 0.910 23 C -0.203 4.203 24 N -0.574 5.574 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.130 0.870 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.223 0.777 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.425 6.514 6.542 15.479 hybrid contribution -0.016 -0.544 -0.633 0.834 sum 12.409 5.970 5.909 14.985 Atomic orbital electron populations 1.21610 0.93493 1.03414 1.00479 1.22534 0.97156 0.98448 0.95384 0.90400 1.21956 0.88012 0.94273 0.96493 1.48278 1.29166 1.43755 1.11764 1.20032 0.83956 0.77935 0.85261 1.90621 1.72078 1.61930 1.18425 1.20809 0.93253 0.96649 0.97235 1.21951 1.02016 0.98083 0.98215 1.21357 0.99810 0.97474 0.94231 1.22682 1.01262 0.96674 0.99623 1.21198 0.82038 0.85891 0.85744 1.92972 1.53819 1.84779 1.86723 1.92986 1.92771 1.67077 1.65827 1.22513 1.01378 0.99548 0.96134 1.21932 1.00639 0.95413 0.98034 1.23856 1.01198 1.00987 0.80944 1.21405 0.88483 0.89943 0.94357 0.90848 1.42358 1.49432 1.32573 1.10305 1.19214 1.21425 1.09917 0.87408 0.91020 1.24737 0.99298 0.98715 0.97514 1.69661 1.30440 1.25561 1.31718 0.86237 0.76989 0.79056 0.84131 1.21677 1.21794 1.20695 0.93837 0.92359 0.90953 0.91448 0.92527 0.91592 0.91634 0.90101 0.89633 0.90475 0.89785 0.86998 0.89303 0.89019 0.89904 0.88356 0.92387 0.89121 0.77723 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.80 37.16 0.33 -1.68 16 2 C -0.12 -1.66 3.42 -88.79 -0.30 -1.96 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.78 6.46 -3.07 -0.02 1.76 16 5 N -0.60 -9.31 3.30 -170.38 -0.56 -9.87 16 6 C 0.54 8.69 4.89 -10.99 -0.05 8.64 16 7 O -0.55 -10.38 14.42 5.55 0.08 -10.30 16 8 C -0.08 -1.00 0.50 -155.66 -0.08 -1.08 16 9 C -0.15 -1.99 8.30 37.16 0.31 -1.68 16 10 C -0.09 -1.12 4.22 -26.73 -0.11 -1.23 16 11 C -0.16 -2.05 5.16 -26.73 -0.14 -2.19 16 12 C 0.29 3.55 2.10 -26.73 -0.06 3.49 16 13 F -0.20 -2.58 16.02 2.25 0.04 -2.54 16 14 F -0.21 -2.78 17.06 2.25 0.04 -2.74 16 15 C -0.16 -1.77 5.23 -26.73 -0.14 -1.91 16 16 C -0.12 -1.37 4.30 -26.73 -0.11 -1.48 16 17 C 0.06 0.82 4.61 -2.41 -0.01 0.81 16 18 C 0.17 2.87 3.47 -65.66 -0.23 2.64 16 19 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 20 N -0.71 -15.48 4.57 -51.23 -0.23 -15.72 16 21 C -0.25 -6.17 9.96 -15.06 -0.15 -6.32 16 22 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 24 N -0.93 -26.33 13.06 55.49 0.72 -25.61 16 25 Si 0.91 21.00 29.55 -169.99 -5.02 15.97 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.33 6.34 -51.93 -0.33 1.00 16 32 H 0.07 1.18 7.82 -51.93 -0.41 0.78 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 35 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 36 H 0.08 1.21 5.13 -51.93 -0.27 0.94 16 37 H 0.09 1.12 7.99 -51.93 -0.42 0.70 16 38 H 0.08 0.84 7.80 -51.93 -0.41 0.43 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.11 1.60 5.88 -51.93 -0.31 1.30 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.11 7.22 -51.93 -0.37 0.73 16 43 H 0.08 0.84 7.80 -51.93 -0.41 0.44 16 44 H 0.10 1.06 4.15 -51.93 -0.22 0.85 16 45 H 0.06 0.70 6.89 -51.93 -0.36 0.34 16 46 H 0.09 1.44 4.53 -51.93 -0.24 1.20 16 47 H 0.39 9.41 6.32 -40.82 -0.26 9.15 16 48 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -28.79 363.45 -7.65 -36.44 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -7.32 Total: 11.33 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.87 Total: -2.44 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.07 Total: -51.20 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.07 Total: -5.28 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.79 -7.65 -36.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054815031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.948 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds