Wall clock time and date at job start Tue Mar 31 2020 17:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.64072 * 2 1 4 4 C 1.54321 * 110.72060 * 123.14444 * 2 1 3 5 5 N 1.47017 * 107.27208 * 140.55636 * 4 2 1 6 6 C 1.34773 * 125.65337 * 181.02100 * 5 4 2 7 7 O 1.21288 * 119.99305 * 4.65187 * 6 5 4 8 8 C 1.50698 * 120.00548 * 184.65166 * 6 5 4 9 9 C 1.53001 * 109.46888 * 290.22436 * 8 6 5 10 10 C 1.53005 * 109.47344 * 170.22577 * 8 6 5 11 11 C 1.53001 * 109.46991 * 300.00178 * 10 8 6 12 12 C 1.53001 * 109.47098 * 299.99907 * 11 10 8 13 13 F 1.39907 * 109.47172 * 300.00371 * 12 11 10 14 14 F 1.39896 * 109.47265 * 180.02562 * 12 11 10 15 15 C 1.53005 * 109.47124 * 60.00174 * 12 11 10 16 16 C 1.53001 * 109.46953 * 50.22542 * 8 6 5 17 17 C 1.47428 * 108.70369 * 1.28485 * 5 4 2 18 18 C 1.55130 * 104.72024 * 335.55605 * 17 5 4 19 19 H 1.08999 * 110.93644 * 155.28727 * 18 17 5 20 20 N 1.46505 * 111.18889 * 279.18908 * 18 17 5 21 21 C 1.36938 * 119.99870 * 267.18287 * 20 18 17 22 22 H 1.07999 * 120.00259 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99848 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99815 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99972 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46716 * 90.00455 * 25 23 21 27 27 H 1.48499 * 109.47158 * 210.00190 * 25 23 21 28 28 H 1.48498 * 109.47247 * 330.00357 * 25 23 21 29 29 H 1.09002 * 109.47045 * 298.31311 * 1 2 3 30 30 H 1.09004 * 109.47078 * 58.30722 * 1 2 3 31 31 H 1.08994 * 109.47053 * 178.31324 * 1 2 3 32 32 H 1.08999 * 109.88165 * 21.13620 * 4 2 1 33 33 H 1.09006 * 109.88257 * 259.97263 * 4 2 1 34 34 H 1.08999 * 109.46669 * 187.45682 * 9 8 6 35 35 H 1.09000 * 109.47441 * 307.45452 * 9 8 6 36 36 H 1.08995 * 109.47138 * 67.45932 * 9 8 6 37 37 H 1.09001 * 109.46949 * 60.00032 * 10 8 6 38 38 H 1.08996 * 109.47135 * 180.02562 * 10 8 6 39 39 H 1.08994 * 109.47081 * 179.97438 * 11 10 8 40 40 H 1.08996 * 109.47271 * 59.99973 * 11 10 8 41 41 H 1.08997 * 109.47035 * 180.02562 * 15 12 11 42 42 H 1.08996 * 109.47135 * 60.00001 * 15 12 11 43 43 H 1.09004 * 109.46505 * 180.02562 * 16 8 6 44 44 H 1.08994 * 109.47097 * 300.00076 * 16 8 6 45 45 H 1.09000 * 110.36744 * 94.48248 * 17 5 4 46 46 H 1.09001 * 110.36823 * 216.80642 * 17 5 4 47 47 H 0.96993 * 119.99751 * 87.19493 * 20 18 17 48 48 H 0.97004 * 119.99687 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2445 -1.5495 0.7416 6 6 3.9923 -2.3810 1.4936 7 8 3.6706 -2.6172 2.6389 8 6 5.2281 -3.0174 0.9115 9 6 4.8220 -4.0493 -0.1426 10 6 6.0182 -3.7091 2.0244 11 6 6.4241 -2.6772 3.0786 12 6 7.2948 -1.5998 2.4289 13 9 8.4421 -2.1906 1.8884 14 9 7.6665 -0.6566 3.3929 15 6 6.5048 -0.9082 1.3160 16 6 6.0988 -1.9401 0.2618 17 6 3.4665 -1.2467 -0.6841 18 6 2.0789 -0.7974 -1.2125 19 1 2.1843 -0.1554 -2.0870 20 7 1.2271 -1.9514 -1.5112 21 6 1.2020 -2.4746 -2.7764 22 1 1.8105 -2.0369 -3.5540 23 6 0.3945 -3.5676 -3.0596 24 7 -0.3474 -4.1007 -2.1121 25 14 0.3608 -4.2818 -4.7853 26 1 1.4018 -5.3341 -4.9058 27 1 -0.9749 -4.8744 -5.0498 28 1 0.6289 -3.2050 -5.7720 29 1 -0.3633 0.4874 0.9047 30 1 -0.3633 0.5399 -0.8745 31 1 -0.3633 -1.0272 -0.0302 32 1 1.3129 -1.4732 1.5800 33 1 2.3741 -0.0990 1.9979 34 1 5.7032 -4.6022 -0.4681 35 1 4.0971 -4.7411 0.2863 36 1 4.3767 -3.5399 -0.9971 37 1 5.3979 -4.4766 2.4873 38 1 6.9122 -4.1689 1.6034 39 1 6.9866 -3.1699 3.8716 40 1 5.5303 -2.2169 3.4996 41 1 7.1252 -0.1410 0.8528 42 1 5.6109 -0.4479 1.7370 43 1 6.9924 -2.4005 -0.1596 44 1 5.5360 -1.4474 -0.5310 45 1 4.1946 -0.4428 -0.7923 46 1 3.8031 -2.1382 -1.2133 47 1 0.6808 -2.3445 -0.8128 48 1 -0.9120 -4.8642 -2.3101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054815031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:49 Heat of formation + Delta-G solvation = -144.418375 kcal Electronic energy + Delta-G solvation = -31304.313114 eV Core-core repulsion = 27029.082456 eV Total energy + Delta-G solvation = -4275.230657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.99514 -47.98223 -41.94623 -39.50816 -37.76485 -35.67341 -34.16053 -32.98121 -32.26565 -31.89943 -29.36607 -27.52230 -27.15096 -25.83368 -24.46990 -24.12287 -22.58008 -21.88894 -20.60820 -19.88991 -19.23874 -18.41650 -17.99449 -17.45942 -17.26025 -17.11922 -16.50253 -15.89856 -15.87684 -15.55799 -15.28408 -15.03073 -14.73591 -14.66775 -14.61547 -14.36789 -14.21050 -14.06435 -13.66329 -13.64368 -13.48954 -13.22984 -13.15360 -13.02230 -12.92080 -12.78632 -12.75468 -12.50105 -12.29423 -12.20602 -12.11252 -11.99106 -11.91370 -11.66836 -11.44776 -11.30758 -11.11442 -10.86314 -10.55989 -9.57669 -8.88973 -7.88165 -5.15361 1.51600 1.52456 1.60071 1.64374 2.09981 2.60568 2.75893 3.06429 3.25693 3.34457 3.43533 3.47952 3.62956 3.75309 3.90921 3.97397 4.02034 4.03801 4.08821 4.15073 4.27442 4.45280 4.53945 4.56029 4.60562 4.68127 4.70311 4.74549 4.76391 4.81534 4.83237 4.90507 4.95926 4.98721 5.02238 5.03801 5.13728 5.19359 5.21939 5.30135 5.38238 5.52793 5.57940 5.64357 6.32554 6.64244 7.20090 7.40436 8.16586 8.38281 9.35167 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.003950 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.448312 B = 7086.110911 C = 7865.166267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.117 0.883 4 C 0.114 3.886 5 N -0.600 5.600 6 C 0.532 3.468 7 O -0.586 6.586 8 C -0.072 4.072 9 C -0.141 4.141 10 C -0.089 4.089 11 C -0.163 4.163 12 C 0.287 3.713 13 F -0.202 7.202 14 F -0.213 7.213 15 C -0.154 4.154 16 C -0.117 4.117 17 C 0.064 3.936 18 C 0.157 3.843 19 H 0.088 0.912 20 N -0.719 5.719 21 C -0.228 4.228 22 H 0.086 0.914 23 C -0.072 4.072 24 N -0.970 5.970 25 Si 0.963 3.037 26 H -0.291 1.291 27 H -0.307 1.307 28 H -0.266 1.266 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.372 0.628 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.100 8.768 4.917 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.135 0.865 4 C -0.009 4.009 5 N -0.331 5.331 6 C 0.322 3.678 7 O -0.468 6.468 8 C -0.075 4.075 9 C -0.198 4.198 10 C -0.127 4.127 11 C -0.200 4.200 12 C 0.251 3.749 13 F -0.183 7.183 14 F -0.194 7.194 15 C -0.192 4.192 16 C -0.154 4.154 17 C -0.060 4.060 18 C 0.047 3.953 19 H 0.106 0.894 20 N -0.357 5.357 21 C -0.360 4.360 22 H 0.104 0.896 23 C -0.264 4.264 24 N -0.622 5.622 25 Si 0.793 3.207 26 H -0.219 1.219 27 H -0.234 1.234 28 H -0.190 1.190 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.101 0.899 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.118 0.882 46 H 0.099 0.901 47 H 0.204 0.796 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.027 8.598 5.360 18.124 hybrid contribution -0.788 -1.098 -0.194 1.366 sum 14.239 7.500 5.166 16.902 Atomic orbital electron populations 1.21531 0.94337 1.01056 1.01587 1.22513 0.96352 0.99766 0.93368 0.86490 1.21967 0.87420 0.93979 0.97502 1.48382 1.28954 1.43622 1.12148 1.20647 0.84723 0.77542 0.84929 1.90605 1.73133 1.62959 1.20073 1.20824 0.92336 0.97069 0.97249 1.21904 1.02406 0.97820 0.97659 1.21354 1.00188 0.97106 0.94010 1.22609 1.00616 0.96847 0.99973 1.21250 0.81959 0.85688 0.85962 1.92971 1.53841 1.84805 1.86649 1.92973 1.92842 1.67322 1.66303 1.22507 1.01157 0.99868 0.95643 1.21926 1.00850 0.94716 0.97873 1.23789 1.00419 1.01884 0.79942 1.21744 0.88862 0.88694 0.96009 0.89426 1.42523 1.50290 1.33916 1.09002 1.19655 1.19208 1.08522 0.88630 0.89642 1.25422 1.00378 1.00193 1.00442 1.69831 1.32378 1.26398 1.33545 0.85294 0.75861 0.78496 0.81031 1.21881 1.23419 1.19024 0.91685 0.92317 0.94923 0.94697 0.90914 0.88851 0.94449 0.91233 0.91089 0.88404 0.88900 0.89067 0.87093 0.89899 0.88080 0.87611 0.88217 0.90076 0.79550 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.80 71.98 0.63 -3.14 16 2 C -0.10 -2.67 3.42 -9.61 -0.03 -2.70 16 3 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 4 C 0.11 3.42 6.46 86.73 0.56 3.98 16 5 N -0.60 -17.98 3.30 -811.35 -2.67 -20.66 16 6 C 0.53 16.91 4.89 87.66 0.43 17.33 16 7 O -0.59 -22.56 14.42 -3.05 -0.04 -22.60 16 8 C -0.07 -1.78 0.50 -52.93 -0.03 -1.81 16 9 C -0.14 -3.71 8.30 71.98 0.60 -3.11 16 10 C -0.09 -2.08 4.22 30.60 0.13 -1.95 16 11 C -0.16 -3.87 5.16 30.59 0.16 -3.71 16 12 C 0.29 6.43 2.10 30.60 0.06 6.49 16 13 F -0.20 -4.53 16.02 44.97 0.72 -3.81 16 14 F -0.21 -5.37 17.06 44.97 0.77 -4.60 16 15 C -0.15 -2.95 5.23 30.60 0.16 -2.79 16 16 C -0.12 -2.19 4.30 30.59 0.13 -2.06 16 17 C 0.06 1.71 4.61 86.93 0.40 2.11 16 18 C 0.16 4.93 3.47 46.46 0.16 5.10 16 19 H 0.09 2.55 8.09 -2.39 -0.02 2.53 16 20 N -0.72 -31.42 4.57 -316.01 -1.44 -32.87 16 21 C -0.23 -11.19 9.96 84.03 0.84 -10.35 16 22 H 0.09 3.89 7.83 -2.91 -0.02 3.87 16 23 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 24 N -0.97 -57.22 13.06 21.65 0.28 -56.94 16 25 Si 0.96 43.57 29.55 68.60 2.03 45.60 16 26 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.03 1.23 6.34 -2.39 -0.02 1.21 16 32 H 0.03 1.27 7.82 -2.39 -0.02 1.25 16 33 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.09 1.91 8.13 -2.39 -0.02 1.89 16 35 H 0.04 1.17 8.13 -2.39 -0.02 1.15 16 36 H 0.07 2.00 5.13 -2.39 -0.01 1.99 16 37 H 0.07 1.86 7.99 -2.39 -0.02 1.84 16 38 H 0.10 1.88 7.80 -2.39 -0.02 1.86 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 40 H 0.09 2.61 5.88 -2.39 -0.01 2.60 16 41 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 1.77 7.22 -2.39 -0.02 1.76 16 43 H 0.10 1.61 7.80 -2.39 -0.02 1.59 16 44 H 0.11 1.84 4.15 -2.39 -0.01 1.83 16 45 H 0.10 1.90 6.89 -2.39 -0.02 1.89 16 46 H 0.08 2.39 4.53 -2.39 -0.01 2.38 16 47 H 0.37 18.67 6.32 -92.71 -0.59 18.08 16 48 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -64.79 363.45 4.70 -60.09 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: 0.40 Total: 35.79 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 4.67 Total: 0.00 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -3.84 Total: -110.47 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.04 Total: -22.60 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 1.49 Total: -8.41 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -64.79 4.70 -60.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054815031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.330 kcal (2) G-P(sol) polarization free energy of solvation -64.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds