Wall clock time and date at job start Tue Mar 31 2020 17:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.91752 * 2 1 4 4 C 1.54910 * 111.00653 * 236.09955 * 2 1 3 5 5 N 1.47427 * 104.83479 * 204.91883 * 4 2 1 6 6 C 1.34772 * 125.64619 * 204.09181 * 5 4 2 7 7 O 1.21287 * 120.00249 * 5.63009 * 6 5 4 8 8 C 1.50700 * 120.00167 * 185.63144 * 6 5 4 9 9 C 1.53008 * 109.47060 * 305.31962 * 8 6 5 10 10 C 1.53003 * 109.46955 * 65.31779 * 8 6 5 11 11 C 1.52998 * 109.47073 * 180.02562 * 10 8 6 12 12 C 1.53008 * 109.46893 * 299.99789 * 11 10 8 13 13 F 1.39892 * 109.47185 * 300.00280 * 12 11 10 14 14 F 1.39894 * 109.46892 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47089 * 60.00220 * 12 11 10 16 16 C 1.52999 * 109.47092 * 300.00066 * 15 12 11 17 17 C 1.47015 * 108.70377 * 24.35180 * 5 4 2 18 18 C 1.54335 * 107.26687 * 358.59227 * 17 5 4 19 19 H 1.08991 * 110.67298 * 96.52157 * 18 17 5 20 20 N 1.46506 * 110.84845 * 219.67427 * 18 17 5 21 21 C 1.36939 * 119.99683 * 268.68564 * 20 18 17 22 22 H 1.08000 * 120.00029 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99784 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00192 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99986 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47151 * 59.99412 * 25 23 21 27 27 H 1.48499 * 109.47122 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46783 * 299.99960 * 25 23 21 29 29 H 1.09006 * 109.47173 * 182.44932 * 1 2 3 30 30 H 1.08996 * 109.47364 * 302.44550 * 1 2 3 31 31 H 1.08994 * 109.47269 * 62.45169 * 1 2 3 32 32 H 1.08998 * 110.36848 * 86.07659 * 4 2 1 33 33 H 1.09001 * 110.36615 * 323.75650 * 4 2 1 34 34 H 1.08998 * 109.47031 * 316.10424 * 9 8 6 35 35 H 1.08993 * 109.47022 * 196.10062 * 9 8 6 36 36 H 1.09007 * 109.46911 * 76.10291 * 9 8 6 37 37 H 1.09001 * 109.46848 * 299.99835 * 10 8 6 38 38 H 1.08992 * 109.47066 * 60.00212 * 10 8 6 39 39 H 1.08996 * 109.47299 * 180.02562 * 11 10 8 40 40 H 1.08992 * 109.47481 * 59.99879 * 11 10 8 41 41 H 1.08993 * 109.47030 * 180.02562 * 15 12 11 42 42 H 1.09000 * 109.46945 * 59.99758 * 15 12 11 43 43 H 1.09003 * 109.46758 * 300.00152 * 16 15 12 44 44 H 1.08996 * 109.47318 * 179.97438 * 16 15 12 45 45 H 1.09004 * 109.88415 * 118.13121 * 17 5 4 46 46 H 1.08995 * 109.88642 * 239.30003 * 17 5 4 47 47 H 0.96997 * 120.00375 * 88.68905 * 20 18 17 48 48 H 0.97004 * 119.99673 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7733 6 6 4.4476 -1.5616 -1.5940 7 8 4.3352 -1.4031 -2.7913 8 6 5.7284 -2.1147 -1.0243 9 6 6.2672 -1.1584 0.0418 10 6 5.4573 -3.4818 -0.3930 11 6 6.7575 -4.0430 0.1861 12 6 7.7907 -4.1936 -0.9324 13 9 7.2985 -5.0680 -1.9072 14 9 8.9793 -4.7074 -0.4031 15 6 8.0618 -2.8265 -1.5637 16 6 6.7616 -2.2652 -2.1427 17 6 3.4658 -1.2794 0.6959 18 6 2.0862 -0.8080 1.2022 19 1 1.4451 -1.6614 1.4229 20 7 2.2287 0.0495 2.3815 21 6 2.2000 -0.5003 3.6353 22 1 2.0727 -1.5661 3.7548 23 6 2.3345 0.3122 4.7527 24 7 2.4891 1.6111 4.6071 25 14 2.2960 -0.4379 6.4631 26 1 3.4020 -1.4197 6.5980 27 1 2.4585 0.6343 7.4775 28 1 0.9963 -1.1247 6.6732 29 1 -0.3634 -1.0268 0.0439 30 1 -0.3634 0.5513 0.8672 31 1 -0.3633 0.4753 -0.9111 32 1 2.1560 -0.1720 -2.0837 33 1 1.4519 -1.6703 -1.4025 34 1 6.1915 -0.1326 -0.3187 35 1 7.3109 -1.3951 0.2480 36 1 5.6827 -1.2665 0.9556 37 1 4.7215 -3.3744 0.4041 38 1 5.0735 -4.1629 -1.1524 39 1 6.5644 -5.0171 0.6354 40 1 7.1409 -3.3618 0.9455 41 1 8.7974 -2.9339 -2.3607 42 1 8.4452 -2.1452 -0.8041 43 1 6.3781 -2.9466 -2.9022 44 1 6.9546 -1.2911 -2.5920 45 1 3.6601 -2.2964 1.0366 46 1 4.2423 -0.6085 1.0630 47 1 2.3433 1.0067 2.2742 48 1 2.5835 2.1788 5.3880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054815036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:56 Heat of formation + Delta-G solvation = -133.051330 kcal Electronic energy + Delta-G solvation = -30504.158320 eV Core-core repulsion = 26229.420575 eV Total energy + Delta-G solvation = -4274.737745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.10533 -47.08354 -40.71555 -38.33377 -37.09709 -34.16940 -32.85012 -31.43346 -31.28165 -30.66915 -27.71735 -26.93767 -26.31893 -24.22068 -23.40469 -23.05046 -21.51415 -20.02687 -19.85504 -18.82044 -17.53514 -17.22638 -16.89750 -16.45834 -16.41478 -16.02227 -15.57345 -14.94168 -14.57758 -14.21312 -14.13956 -13.88453 -13.65761 -13.53275 -13.38096 -13.24958 -13.03481 -12.92931 -12.75379 -12.66249 -12.38799 -12.22767 -12.18545 -11.87671 -11.81809 -11.58207 -11.36625 -11.20616 -11.15616 -10.98283 -10.77739 -10.67959 -10.60565 -10.32443 -10.22752 -10.03633 -9.82175 -9.53145 -9.04055 -8.34683 -7.16189 -5.91583 -3.22767 2.74329 3.13672 3.34558 3.40107 3.41018 3.58848 3.87237 4.08812 4.17217 4.45705 4.54715 4.63066 4.69386 4.81884 4.91568 4.99603 5.04397 5.09793 5.16811 5.26217 5.38365 5.48536 5.49929 5.53338 5.54190 5.61610 5.67369 5.73132 5.77149 5.79591 5.83222 5.85854 5.94686 5.96816 6.04256 6.16988 6.18046 6.25041 6.35107 6.46992 6.52025 6.57485 6.80735 7.55768 7.75677 8.25217 8.31123 9.37778 9.91206 10.26092 11.30037 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.003817 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.071610 B = 7334.634414 C = 8978.676213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.112 3.888 5 N -0.609 5.609 6 C 0.539 3.461 7 O -0.552 6.552 8 C -0.075 4.075 9 C -0.162 4.162 10 C -0.113 4.113 11 C -0.156 4.156 12 C 0.287 3.713 13 F -0.200 7.200 14 F -0.204 7.204 15 C -0.160 4.160 16 C -0.092 4.092 17 C 0.061 3.939 18 C 0.176 3.824 19 H 0.068 0.932 20 N -0.710 5.710 21 C -0.251 4.251 22 H 0.072 0.928 23 C -0.005 4.005 24 N -0.928 5.928 25 Si 0.906 3.094 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.387 0.613 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 -8.080 -11.128 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.101 0.899 4 C -0.011 4.011 5 N -0.341 5.341 6 C 0.327 3.673 7 O -0.430 6.430 8 C -0.078 4.078 9 C -0.218 4.218 10 C -0.150 4.150 11 C -0.194 4.194 12 C 0.251 3.749 13 F -0.181 7.181 14 F -0.185 7.185 15 C -0.198 4.198 16 C -0.130 4.130 17 C -0.065 4.065 18 C 0.063 3.937 19 H 0.086 0.914 20 N -0.350 5.350 21 C -0.381 4.381 22 H 0.089 0.911 23 C -0.202 4.202 24 N -0.575 5.575 25 Si 0.737 3.263 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.221 0.779 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.925 -8.122 -11.617 15.776 hybrid contribution 0.218 -0.236 1.004 1.054 sum 7.143 -8.358 -10.613 15.281 Atomic orbital electron populations 1.21592 0.93896 1.01791 1.01737 1.22650 0.96328 0.99794 0.94687 0.89908 1.22268 0.82777 0.98140 0.97876 1.48457 1.11942 1.65707 1.08030 1.20030 0.83936 0.77503 0.85841 1.90664 1.82197 1.54979 1.15160 1.20739 0.93438 0.96514 0.97131 1.22319 1.01893 0.98749 0.98873 1.21670 0.97041 0.94689 1.01595 1.22522 0.95163 1.04517 0.97185 1.21157 0.80890 0.86898 0.85944 1.92990 1.87967 1.72193 1.64914 1.93000 1.49459 1.88940 1.87134 1.22633 1.00329 0.94104 1.02732 1.21322 0.91915 1.02940 0.96837 1.23756 1.03611 1.01368 0.77744 1.21276 0.91641 0.93825 0.86928 0.91440 1.42350 1.86336 1.06221 1.00082 1.19185 1.43228 0.92531 0.83198 0.91052 1.24747 1.02168 0.95398 0.97919 1.69647 1.55730 1.02843 1.29326 0.86294 0.77929 0.77870 0.84211 1.21147 1.21644 1.21148 0.92836 0.91429 0.93240 0.90968 0.91714 0.91817 0.91374 0.89707 0.88931 0.90541 0.89112 0.88076 0.89265 0.88219 0.90100 0.89836 0.91946 0.89747 0.77870 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.29 37.15 0.35 -1.44 16 2 C -0.11 -1.71 3.27 -88.47 -0.29 -2.00 16 3 H 0.08 1.32 8.01 -51.93 -0.42 0.91 16 4 C 0.11 1.59 6.40 -2.53 -0.02 1.57 16 5 N -0.61 -8.96 3.32 -170.52 -0.57 -9.53 16 6 C 0.54 8.10 6.51 -10.99 -0.07 8.03 16 7 O -0.55 -9.89 16.22 5.55 0.09 -9.80 16 8 C -0.08 -0.89 0.49 -155.65 -0.08 -0.97 16 9 C -0.16 -1.81 6.71 37.16 0.25 -1.56 16 10 C -0.11 -1.22 4.43 -26.73 -0.12 -1.34 16 11 C -0.16 -1.51 5.19 -26.73 -0.14 -1.65 16 12 C 0.29 3.05 2.10 -26.73 -0.06 2.99 16 13 F -0.20 -2.46 16.02 2.25 0.04 -2.42 16 14 F -0.20 -2.38 17.06 2.25 0.04 -2.34 16 15 C -0.16 -1.49 5.19 -26.73 -0.14 -1.63 16 16 C -0.09 -1.02 3.92 -26.73 -0.10 -1.13 16 17 C 0.06 0.93 4.83 -3.06 -0.01 0.91 16 18 C 0.18 3.03 3.08 -66.08 -0.20 2.82 16 19 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 20 N -0.71 -15.65 5.15 -51.64 -0.27 -15.92 16 21 C -0.25 -6.24 9.96 -15.06 -0.15 -6.39 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 24 N -0.93 -26.05 13.06 55.49 0.72 -25.33 16 25 Si 0.91 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 29 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.04 7.99 -51.93 -0.41 0.63 16 33 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 34 H 0.06 0.76 8.03 -51.93 -0.42 0.35 16 35 H 0.07 0.62 5.00 -51.93 -0.26 0.36 16 36 H 0.08 1.03 5.03 -51.93 -0.26 0.77 16 37 H 0.09 1.02 5.21 -51.93 -0.27 0.75 16 38 H 0.08 0.88 7.80 -51.93 -0.41 0.47 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.10 0.88 6.82 -51.93 -0.35 0.53 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.80 6.12 -51.93 -0.32 0.48 16 43 H 0.08 1.00 7.70 -51.93 -0.40 0.60 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.89 5.62 -51.93 -0.29 0.60 16 46 H 0.08 1.39 5.57 -51.93 -0.29 1.10 16 47 H 0.39 9.27 7.76 -40.82 -0.32 8.95 16 48 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -28.91 366.18 -7.65 -36.57 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.33 Total: 9.43 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.88 Total: -2.00 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.11 Total: -50.78 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.07 Total: -4.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.91 -7.65 -36.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054815036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.485 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds