Wall clock time and date at job start Tue Mar 31 2020 17:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.91752 * 2 1 4 4 C 1.54910 * 111.00653 * 236.09955 * 2 1 3 5 5 N 1.47427 * 104.83479 * 204.91883 * 4 2 1 6 6 C 1.34772 * 125.64619 * 204.09181 * 5 4 2 7 7 O 1.21287 * 120.00249 * 5.63009 * 6 5 4 8 8 C 1.50700 * 120.00167 * 185.63144 * 6 5 4 9 9 C 1.53008 * 109.47060 * 305.31962 * 8 6 5 10 10 C 1.53003 * 109.46955 * 65.31779 * 8 6 5 11 11 C 1.52998 * 109.47073 * 180.02562 * 10 8 6 12 12 C 1.53008 * 109.46893 * 299.99789 * 11 10 8 13 13 F 1.39892 * 109.47185 * 300.00280 * 12 11 10 14 14 F 1.39894 * 109.46892 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47089 * 60.00220 * 12 11 10 16 16 C 1.52999 * 109.47092 * 300.00066 * 15 12 11 17 17 C 1.47015 * 108.70377 * 24.35180 * 5 4 2 18 18 C 1.54335 * 107.26687 * 358.59227 * 17 5 4 19 19 H 1.08991 * 110.67298 * 96.52157 * 18 17 5 20 20 N 1.46506 * 110.84845 * 219.67427 * 18 17 5 21 21 C 1.36939 * 119.99683 * 268.68564 * 20 18 17 22 22 H 1.08000 * 120.00029 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99784 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00192 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99986 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47151 * 59.99412 * 25 23 21 27 27 H 1.48499 * 109.47122 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46783 * 299.99960 * 25 23 21 29 29 H 1.09006 * 109.47173 * 182.44932 * 1 2 3 30 30 H 1.08996 * 109.47364 * 302.44550 * 1 2 3 31 31 H 1.08994 * 109.47269 * 62.45169 * 1 2 3 32 32 H 1.08998 * 110.36848 * 86.07659 * 4 2 1 33 33 H 1.09001 * 110.36615 * 323.75650 * 4 2 1 34 34 H 1.08998 * 109.47031 * 316.10424 * 9 8 6 35 35 H 1.08993 * 109.47022 * 196.10062 * 9 8 6 36 36 H 1.09007 * 109.46911 * 76.10291 * 9 8 6 37 37 H 1.09001 * 109.46848 * 299.99835 * 10 8 6 38 38 H 1.08992 * 109.47066 * 60.00212 * 10 8 6 39 39 H 1.08996 * 109.47299 * 180.02562 * 11 10 8 40 40 H 1.08992 * 109.47481 * 59.99879 * 11 10 8 41 41 H 1.08993 * 109.47030 * 180.02562 * 15 12 11 42 42 H 1.09000 * 109.46945 * 59.99758 * 15 12 11 43 43 H 1.09003 * 109.46758 * 300.00152 * 16 15 12 44 44 H 1.08996 * 109.47318 * 179.97438 * 16 15 12 45 45 H 1.09004 * 109.88415 * 118.13121 * 17 5 4 46 46 H 1.08995 * 109.88642 * 239.30003 * 17 5 4 47 47 H 0.96997 * 120.00375 * 88.68905 * 20 18 17 48 48 H 0.97004 * 119.99673 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7733 6 6 4.4476 -1.5616 -1.5940 7 8 4.3352 -1.4031 -2.7913 8 6 5.7284 -2.1147 -1.0243 9 6 6.2672 -1.1584 0.0418 10 6 5.4573 -3.4818 -0.3930 11 6 6.7575 -4.0430 0.1861 12 6 7.7907 -4.1936 -0.9324 13 9 7.2985 -5.0680 -1.9072 14 9 8.9793 -4.7074 -0.4031 15 6 8.0618 -2.8265 -1.5637 16 6 6.7616 -2.2652 -2.1427 17 6 3.4658 -1.2794 0.6959 18 6 2.0862 -0.8080 1.2022 19 1 1.4451 -1.6614 1.4229 20 7 2.2287 0.0495 2.3815 21 6 2.2000 -0.5003 3.6353 22 1 2.0727 -1.5661 3.7548 23 6 2.3345 0.3122 4.7527 24 7 2.4891 1.6111 4.6071 25 14 2.2960 -0.4379 6.4631 26 1 3.4020 -1.4197 6.5980 27 1 2.4585 0.6343 7.4775 28 1 0.9963 -1.1247 6.6732 29 1 -0.3634 -1.0268 0.0439 30 1 -0.3634 0.5513 0.8672 31 1 -0.3633 0.4753 -0.9111 32 1 2.1560 -0.1720 -2.0837 33 1 1.4519 -1.6703 -1.4025 34 1 6.1915 -0.1326 -0.3187 35 1 7.3109 -1.3951 0.2480 36 1 5.6827 -1.2665 0.9556 37 1 4.7215 -3.3744 0.4041 38 1 5.0735 -4.1629 -1.1524 39 1 6.5644 -5.0171 0.6354 40 1 7.1409 -3.3618 0.9455 41 1 8.7974 -2.9339 -2.3607 42 1 8.4452 -2.1452 -0.8041 43 1 6.3781 -2.9466 -2.9022 44 1 6.9546 -1.2911 -2.5920 45 1 3.6601 -2.2964 1.0366 46 1 4.2423 -0.6085 1.0630 47 1 2.3433 1.0067 2.2742 48 1 2.5835 2.1788 5.3880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054815036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:55 Heat of formation + Delta-G solvation = -148.911522 kcal Electronic energy + Delta-G solvation = -30504.846070 eV Core-core repulsion = 26229.420575 eV Total energy + Delta-G solvation = -4275.425495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.97535 -47.96591 -41.84578 -39.50158 -38.28151 -35.84038 -34.13109 -32.66674 -32.26050 -31.95649 -29.18679 -27.87701 -27.45795 -25.89326 -24.33228 -24.11933 -22.74724 -21.37761 -20.91105 -19.84428 -19.05768 -18.40100 -17.93719 -17.49887 -17.31878 -17.19235 -16.83732 -16.31042 -15.83347 -15.45002 -15.27998 -15.14616 -14.81005 -14.78260 -14.41381 -14.30030 -14.24032 -14.03810 -13.79616 -13.62225 -13.53225 -13.38057 -13.17007 -12.99309 -12.83717 -12.81453 -12.73791 -12.53083 -12.40763 -12.21071 -12.10502 -12.00278 -11.88025 -11.65439 -11.59630 -11.39472 -11.12241 -10.87656 -10.67722 -9.59223 -9.00532 -7.89916 -5.19188 1.53914 1.54716 1.55523 1.60580 1.97212 2.60394 2.77822 3.06782 3.14069 3.37725 3.42043 3.54505 3.64681 3.75051 3.83166 3.88930 3.93140 3.99821 4.06743 4.23374 4.25016 4.34669 4.41569 4.47386 4.58510 4.63900 4.66546 4.69182 4.75163 4.79179 4.83292 4.88085 4.91213 4.94552 4.97763 5.08856 5.12020 5.17638 5.23788 5.28811 5.34580 5.39215 5.51688 5.59950 6.30192 6.53629 7.10062 7.38718 8.10308 8.34238 9.32675 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.003817 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.071610 B = 7334.634414 C = 8978.676213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 H 0.069 0.931 4 C 0.114 3.886 5 N -0.608 5.608 6 C 0.534 3.466 7 O -0.583 6.583 8 C -0.070 4.070 9 C -0.157 4.157 10 C -0.107 4.107 11 C -0.152 4.152 12 C 0.282 3.718 13 F -0.212 7.212 14 F -0.209 7.209 15 C -0.154 4.154 16 C -0.088 4.088 17 C 0.074 3.926 18 C 0.169 3.831 19 H 0.071 0.929 20 N -0.720 5.720 21 C -0.238 4.238 22 H 0.081 0.919 23 C -0.066 4.066 24 N -0.967 5.967 25 Si 0.964 3.036 26 H -0.276 1.276 27 H -0.302 1.302 28 H -0.281 1.281 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.375 0.625 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.510 -9.566 -11.182 16.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 H 0.087 0.913 4 C -0.008 4.008 5 N -0.340 5.340 6 C 0.324 3.676 7 O -0.464 6.464 8 C -0.073 4.073 9 C -0.214 4.214 10 C -0.145 4.145 11 C -0.190 4.190 12 C 0.246 3.754 13 F -0.193 7.193 14 F -0.190 7.190 15 C -0.192 4.192 16 C -0.126 4.126 17 C -0.051 4.051 18 C 0.059 3.941 19 H 0.089 0.911 20 N -0.359 5.359 21 C -0.370 4.370 22 H 0.099 0.901 23 C -0.259 4.259 24 N -0.617 5.617 25 Si 0.794 3.206 26 H -0.202 1.202 27 H -0.229 1.229 28 H -0.207 1.207 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.136 0.864 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.207 0.793 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.498 -9.660 -11.699 16.924 hybrid contribution 0.001 0.193 0.899 0.920 sum 7.499 -9.468 -10.800 16.202 Atomic orbital electron populations 1.21550 0.92609 1.02473 1.01856 1.22544 0.97345 0.98783 0.93875 0.91292 1.22290 0.82781 0.98546 0.97221 1.48488 1.12277 1.65525 1.07743 1.20616 0.84677 0.76859 0.85445 1.90649 1.82835 1.56357 1.16512 1.20753 0.91993 0.97058 0.97540 1.22288 1.03263 0.97925 0.97941 1.21608 0.97816 0.93798 1.01259 1.22528 0.94115 1.05325 0.97042 1.21383 0.80882 0.87048 0.86058 1.92970 1.88132 1.72717 1.65495 1.92991 1.49782 1.89063 1.87190 1.22622 0.99458 0.93557 1.03521 1.21252 0.92520 1.02553 0.96253 1.23444 1.01752 1.01915 0.77968 1.21462 0.92848 0.93595 0.86220 0.91144 1.42453 1.86525 1.06114 1.00767 1.19571 1.40313 0.92880 0.84199 0.90077 1.25425 1.03555 0.95759 1.01139 1.69798 1.58375 1.04067 1.29457 0.85360 0.78135 0.76823 0.80310 1.20181 1.22920 1.20704 0.91641 0.93483 0.91157 0.91164 0.90167 0.92882 0.88879 0.90535 0.88924 0.91313 0.88226 0.86656 0.88194 0.86419 0.91648 0.90062 0.90385 0.90688 0.79299 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.29 71.98 0.67 -2.59 16 2 C -0.11 -3.05 3.27 -9.40 -0.03 -3.08 16 3 H 0.07 2.20 8.01 -2.39 -0.02 2.18 16 4 C 0.11 3.08 6.40 86.86 0.56 3.63 16 5 N -0.61 -17.19 3.32 -811.78 -2.70 -19.89 16 6 C 0.53 15.56 6.51 87.66 0.57 16.13 16 7 O -0.58 -20.63 16.22 -3.05 -0.05 -20.68 16 8 C -0.07 -1.56 0.49 -52.92 -0.03 -1.59 16 9 C -0.16 -3.23 6.71 71.98 0.48 -2.74 16 10 C -0.11 -2.13 4.43 30.59 0.14 -1.99 16 11 C -0.15 -2.56 5.19 30.60 0.16 -2.40 16 12 C 0.28 5.37 2.10 30.60 0.06 5.43 16 13 F -0.21 -4.93 16.02 44.97 0.72 -4.21 16 14 F -0.21 -4.40 17.06 44.97 0.77 -3.63 16 15 C -0.15 -2.50 5.19 30.59 0.16 -2.34 16 16 C -0.09 -1.82 3.92 30.59 0.12 -1.70 16 17 C 0.07 2.17 4.83 86.73 0.42 2.58 16 18 C 0.17 5.64 3.08 46.18 0.14 5.78 16 19 H 0.07 2.33 7.96 -2.39 -0.02 2.32 16 20 N -0.72 -31.56 5.15 -317.30 -1.64 -33.19 16 21 C -0.24 -11.66 9.96 84.03 0.84 -10.82 16 22 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 23 C -0.07 -3.46 5.50 84.86 0.47 -3.00 16 24 N -0.97 -55.11 13.06 21.65 0.28 -54.83 16 25 Si 0.96 42.67 29.55 68.60 2.03 44.70 16 26 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 29 H 0.06 1.51 8.11 -2.38 -0.02 1.49 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.95 7.99 -2.39 -0.02 1.94 16 33 H 0.08 1.94 8.04 -2.39 -0.02 1.93 16 34 H 0.05 1.21 8.03 -2.39 -0.02 1.19 16 35 H 0.09 1.43 5.00 -2.39 -0.01 1.42 16 36 H 0.08 1.72 5.03 -2.38 -0.01 1.71 16 37 H 0.09 1.83 5.21 -2.39 -0.01 1.82 16 38 H 0.07 1.48 7.80 -2.39 -0.02 1.46 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.12 1.63 6.82 -2.39 -0.02 1.61 16 41 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.12 1.50 6.12 -2.39 -0.01 1.48 16 43 H 0.06 1.57 7.70 -2.39 -0.02 1.55 16 44 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.08 2.05 5.62 -2.39 -0.01 2.04 16 46 H 0.08 2.39 5.57 -2.39 -0.01 2.38 16 47 H 0.37 18.21 7.76 -92.71 -0.72 17.49 16 48 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -61.79 366.18 4.41 -57.38 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.26 Total: 33.04 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 4.72 Total: 1.31 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -4.05 Total: -107.91 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 9 Polarization: -9.33 SS G_CDS: 1.49 Total: -7.84 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -61.79 4.41 -57.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054815036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.531 kcal (2) G-P(sol) polarization free energy of solvation -61.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds