Wall clock time and date at job start Tue Mar 31 2020 16:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58561 * 2 1 4 4 C 1.53190 * 109.58604 * 120.27944 * 2 1 3 5 5 C 1.53044 * 109.31051 * 174.41980 * 4 2 1 6 6 C 1.53036 * 109.54066 * 298.63450 * 5 4 2 7 7 H 1.08997 * 109.49711 * 181.31591 * 6 5 4 8 8 N 1.46495 * 109.50032 * 301.38512 * 6 5 4 9 9 C 1.34780 * 120.00046 * 204.99694 * 8 6 5 10 10 O 1.21282 * 119.99670 * 359.97438 * 9 8 6 11 11 C 1.50702 * 119.99946 * 179.97438 * 9 8 6 12 12 C 1.52993 * 109.47263 * 300.00688 * 11 9 8 13 13 C 1.52998 * 109.46978 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47523 * 59.99729 * 13 12 11 15 15 F 1.39902 * 109.47570 * 180.02562 * 14 13 12 16 16 F 1.39902 * 109.47544 * 59.99830 * 14 13 12 17 17 C 1.53005 * 109.46920 * 300.00029 * 14 13 12 18 18 C 1.52995 * 109.47074 * 179.97438 * 11 9 8 19 19 C 1.53205 * 109.30944 * 61.36639 * 6 5 4 20 20 N 1.46920 * 108.77551 * 305.36379 * 19 6 5 21 21 C 1.36935 * 120.63369 * 233.58836 * 20 19 6 22 22 H 1.08002 * 120.00364 * 150.20061 * 21 20 19 23 23 C 1.38813 * 119.99574 * 330.20161 * 21 20 19 24 24 N 1.31618 * 120.00200 * 344.47590 * 23 21 20 25 25 Si 1.86801 * 119.99977 * 164.47523 * 23 21 20 26 26 H 1.48500 * 109.47060 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47120 * 119.99956 * 25 23 21 28 28 H 1.48491 * 109.47378 * 239.99989 * 25 23 21 29 29 H 1.08999 * 109.47068 * 299.72174 * 1 2 3 30 30 H 1.09000 * 109.47368 * 179.71630 * 1 2 3 31 31 H 1.08998 * 109.46932 * 59.71701 * 1 2 3 32 32 H 1.08995 * 109.50060 * 294.37704 * 4 2 1 33 33 H 1.09006 * 109.49654 * 54.44243 * 4 2 1 34 34 H 1.08995 * 109.45772 * 58.65881 * 5 4 2 35 35 H 1.09000 * 109.45422 * 178.62948 * 5 4 2 36 36 H 0.97000 * 120.00368 * 24.99888 * 8 6 5 37 37 H 1.09009 * 109.46728 * 60.00397 * 11 9 8 38 38 H 1.08999 * 109.46930 * 299.99466 * 12 11 9 39 39 H 1.08995 * 109.47803 * 59.99531 * 12 11 9 40 40 H 1.08999 * 109.47225 * 299.99270 * 13 12 11 41 41 H 1.09003 * 109.47565 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.47156 * 300.00195 * 17 14 13 43 43 H 1.08997 * 109.47216 * 179.97438 * 17 14 13 44 44 H 1.09002 * 109.47550 * 300.00387 * 18 11 9 45 45 H 1.08999 * 109.46914 * 60.00043 * 18 11 9 46 46 H 1.08998 * 109.58139 * 65.15443 * 19 6 5 47 47 H 1.08999 * 109.58520 * 185.43460 * 19 6 5 48 48 H 0.97004 * 120.00235 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5675 -0.8464 1.1712 6 6 3.9569 -1.6658 -0.0613 7 1 5.0412 -1.7697 -0.1014 8 7 3.3411 -2.9926 0.0190 9 6 3.8979 -4.0344 -0.6301 10 8 4.9085 -3.8732 -1.2810 11 6 3.2648 -5.3994 -0.5469 12 6 3.2221 -5.8538 0.9134 13 6 2.5798 -7.2399 0.9976 14 6 3.4041 -8.2346 0.1779 15 9 2.8165 -9.5020 0.2544 16 9 4.7061 -8.2923 0.6865 17 6 3.4467 -7.7802 -1.2825 18 6 4.0881 -6.3943 -1.3674 19 6 3.4650 -0.9486 -1.3226 20 7 2.0225 -0.7011 -1.1936 21 6 1.1537 -1.1155 -2.1675 22 1 0.1395 -1.3818 -1.9087 23 6 1.5765 -1.1932 -3.4874 24 7 2.6873 -0.5931 -3.8591 25 14 0.5688 -2.1497 -4.7361 26 1 -0.6269 -2.7260 -4.0703 27 1 0.1368 -1.2384 -5.8261 28 1 1.3951 -3.2446 -5.3047 29 1 -0.3633 0.5095 0.8925 30 1 -0.3634 -1.0276 -0.0051 31 1 -0.3633 0.5182 -0.8874 32 1 1.7660 -0.1641 2.1370 33 1 1.6025 -1.7234 1.2938 34 1 4.0061 0.1488 1.0991 35 1 3.9377 -1.3423 2.0685 36 1 2.5327 -3.1215 0.5393 37 1 2.2503 -5.3541 -0.9432 38 1 4.2365 -5.8991 1.3095 39 1 2.6353 -5.1449 1.4975 40 1 1.5654 -7.1950 0.6013 41 1 2.5498 -7.5639 2.0379 42 1 2.4323 -7.7353 -1.6788 43 1 4.0343 -8.4886 -1.8664 44 1 4.1181 -6.0704 -2.4077 45 1 5.1027 -6.4397 -0.9716 46 1 3.9903 0.0002 -1.4317 47 1 3.6540 -1.5735 -2.1954 48 1 2.9826 -0.6471 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071843841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:52 Heat of formation + Delta-G solvation = -140.511496 kcal Electronic energy + Delta-G solvation = -30779.560648 eV Core-core repulsion = 26504.499406 eV Total energy + Delta-G solvation = -4275.061242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.07161 -47.05816 -39.89152 -38.07676 -36.67531 -34.13536 -32.75906 -31.47814 -30.97131 -30.01007 -29.61330 -26.22554 -25.01361 -23.60051 -23.25513 -22.19067 -20.98831 -20.41377 -19.76214 -18.73998 -17.55103 -17.01175 -16.89748 -16.36578 -16.27910 -15.43619 -15.09564 -14.58361 -14.23560 -14.16708 -14.04393 -13.72623 -13.63005 -13.49442 -13.35575 -13.21673 -13.01189 -12.83214 -12.62915 -12.48860 -12.23198 -11.94554 -11.82181 -11.58879 -11.36662 -11.23634 -11.18371 -10.97820 -10.88761 -10.75120 -10.74345 -10.39875 -10.33603 -10.26344 -9.98107 -9.55398 -9.47000 -9.20178 -8.46970 -8.34330 -6.60630 -5.76635 -3.21213 3.16820 3.35137 3.41679 3.44595 3.61588 3.67005 3.92535 4.20312 4.26470 4.47854 4.71358 4.80880 4.92746 5.07653 5.09646 5.26456 5.29375 5.33983 5.41431 5.45388 5.49228 5.56719 5.58052 5.61645 5.64859 5.82274 5.86466 5.99775 6.09418 6.12324 6.14357 6.27463 6.31149 6.33011 6.42793 6.51451 6.58990 6.68941 6.89986 7.03197 7.11097 7.39258 7.68430 7.82335 8.12028 8.47797 8.81710 9.22123 9.86632 10.43435 11.31292 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.004257 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.657856 B = 6575.788618 C = 7562.703246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.129 4.129 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.074 0.926 8 N -0.699 5.699 9 C 0.520 3.480 10 O -0.545 6.545 11 C -0.113 4.113 12 C -0.108 4.108 13 C -0.155 4.155 14 C 0.286 3.714 15 F -0.206 7.206 16 F -0.199 7.199 17 C -0.158 4.158 18 C -0.098 4.098 19 C 0.163 3.837 20 N -0.582 5.582 21 C -0.251 4.251 22 H 0.068 0.932 23 C 0.007 3.993 24 N -0.898 5.898 25 Si 0.894 3.106 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.289 1.289 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.394 0.606 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.024 0.976 47 H 0.095 0.905 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 -10.260 11.786 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.012 3.988 7 H 0.092 0.908 8 N -0.349 5.349 9 C 0.305 3.695 10 O -0.423 6.423 11 C -0.134 4.134 12 C -0.146 4.146 13 C -0.193 4.193 14 C 0.250 3.750 15 F -0.187 7.187 16 F -0.180 7.180 17 C -0.196 4.196 18 C -0.136 4.136 19 C 0.037 3.963 20 N -0.305 5.305 21 C -0.380 4.380 22 H 0.085 0.915 23 C -0.193 4.193 24 N -0.542 5.542 25 Si 0.724 3.276 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.216 1.216 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.229 0.771 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.042 0.958 47 H 0.113 0.887 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.061 -10.135 11.160 15.075 hybrid contribution -0.865 -0.638 -0.499 1.184 sum -0.803 -10.773 10.661 15.178 Atomic orbital electron populations 1.21792 0.96157 1.01198 1.00127 1.20458 0.92845 0.93622 0.87240 0.95853 1.22059 0.95172 1.00604 0.99060 1.21686 0.96965 1.00152 0.96843 1.21759 0.96926 0.81997 0.98109 0.90767 1.45841 1.29281 1.08534 1.51256 1.20162 0.84486 0.85701 0.79173 1.90681 1.25434 1.85220 1.40917 1.21408 1.01821 0.93447 0.96727 1.21488 1.02478 0.95035 0.95628 1.22507 1.00451 0.94918 1.01440 1.21174 0.77205 0.80322 0.96262 1.92997 1.84208 1.44022 1.97435 1.92995 1.39451 1.96571 1.88993 1.22558 1.04694 0.99493 0.92845 1.21289 0.99460 0.90770 1.02102 1.21148 0.83731 0.97004 0.94465 1.44039 1.02697 1.64694 1.19118 1.19102 0.94982 1.37907 0.86031 0.91464 1.25071 0.97724 0.99483 0.96979 1.69999 1.23930 1.43606 1.16623 0.86364 0.79562 0.79838 0.81845 1.20354 1.21779 1.21623 0.94467 0.92975 0.92097 0.92937 0.92729 0.91207 0.93092 0.77150 0.87992 0.90371 0.89958 0.88438 0.89307 0.88639 0.89287 0.89438 0.90201 0.95847 0.88715 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.95 37.16 0.30 -2.06 16 2 C 0.17 3.13 3.50 -67.60 -0.24 2.90 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.96 5.20 -26.61 -0.14 -2.10 16 5 C -0.12 -1.79 5.58 -26.69 -0.15 -1.94 16 6 C 0.12 2.16 2.81 -67.81 -0.19 1.97 16 7 H 0.07 1.42 7.58 -51.93 -0.39 1.03 16 8 N -0.70 -11.56 4.81 -53.69 -0.26 -11.82 16 9 C 0.52 9.01 7.12 -10.98 -0.08 8.93 16 10 O -0.54 -11.68 15.64 5.56 0.09 -11.59 16 11 C -0.11 -1.46 2.53 -91.78 -0.23 -1.69 16 12 C -0.11 -1.10 4.98 -26.74 -0.13 -1.23 16 13 C -0.16 -1.39 5.45 -26.73 -0.15 -1.53 16 14 C 0.29 3.11 2.10 -26.73 -0.06 3.05 16 15 F -0.21 -2.42 17.06 2.25 0.04 -2.38 16 16 F -0.20 -2.51 16.03 2.25 0.04 -2.48 16 17 C -0.16 -1.65 5.45 -26.75 -0.15 -1.80 16 18 C -0.10 -1.27 4.37 -26.76 -0.12 -1.38 16 19 C 0.16 3.78 4.88 -3.71 -0.02 3.76 16 20 N -0.58 -13.36 2.90 -164.77 -0.48 -13.83 16 21 C -0.25 -6.39 8.58 -15.06 -0.13 -6.52 16 22 H 0.07 1.68 6.23 -52.49 -0.33 1.35 16 23 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 24 N -0.90 -25.93 11.23 55.49 0.62 -25.31 16 25 Si 0.89 21.37 29.58 -169.99 -5.03 16.34 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.91 7.40 -51.93 -0.38 0.52 16 31 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.79 6.41 -51.93 -0.33 0.46 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.39 5.70 6.19 -40.82 -0.25 5.45 16 37 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 38 H 0.08 0.86 7.80 -51.93 -0.41 0.45 16 39 H 0.08 0.72 7.56 -51.93 -0.39 0.33 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 45 H 0.08 1.11 7.76 -51.93 -0.40 0.70 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 2.60 6.15 -51.93 -0.32 2.28 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -30.76 370.74 -8.77 -39.53 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.81 Total: 5.51 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.56 Total: 0.45 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.11 Total: -50.96 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.07 Total: -4.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.76 -8.77 -39.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071843841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.985 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds