Wall clock time and date at job start Tue Mar 31 2020 16:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58561 * 2 1 4 4 C 1.53190 * 109.58604 * 120.27944 * 2 1 3 5 5 C 1.53044 * 109.31051 * 174.41980 * 4 2 1 6 6 C 1.53036 * 109.54066 * 298.63450 * 5 4 2 7 7 H 1.08997 * 109.49711 * 181.31591 * 6 5 4 8 8 N 1.46495 * 109.50032 * 301.38512 * 6 5 4 9 9 C 1.34780 * 120.00046 * 204.99694 * 8 6 5 10 10 O 1.21282 * 119.99670 * 359.97438 * 9 8 6 11 11 C 1.50702 * 119.99946 * 179.97438 * 9 8 6 12 12 C 1.52993 * 109.47263 * 300.00688 * 11 9 8 13 13 C 1.52998 * 109.46978 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47523 * 59.99729 * 13 12 11 15 15 F 1.39902 * 109.47570 * 180.02562 * 14 13 12 16 16 F 1.39902 * 109.47544 * 59.99830 * 14 13 12 17 17 C 1.53005 * 109.46920 * 300.00029 * 14 13 12 18 18 C 1.52995 * 109.47074 * 179.97438 * 11 9 8 19 19 C 1.53205 * 109.30944 * 61.36639 * 6 5 4 20 20 N 1.46920 * 108.77551 * 305.36379 * 19 6 5 21 21 C 1.36935 * 120.63369 * 233.58836 * 20 19 6 22 22 H 1.08002 * 120.00364 * 150.20061 * 21 20 19 23 23 C 1.38813 * 119.99574 * 330.20161 * 21 20 19 24 24 N 1.31618 * 120.00200 * 344.47590 * 23 21 20 25 25 Si 1.86801 * 119.99977 * 164.47523 * 23 21 20 26 26 H 1.48500 * 109.47060 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47120 * 119.99956 * 25 23 21 28 28 H 1.48491 * 109.47378 * 239.99989 * 25 23 21 29 29 H 1.08999 * 109.47068 * 299.72174 * 1 2 3 30 30 H 1.09000 * 109.47368 * 179.71630 * 1 2 3 31 31 H 1.08998 * 109.46932 * 59.71701 * 1 2 3 32 32 H 1.08995 * 109.50060 * 294.37704 * 4 2 1 33 33 H 1.09006 * 109.49654 * 54.44243 * 4 2 1 34 34 H 1.08995 * 109.45772 * 58.65881 * 5 4 2 35 35 H 1.09000 * 109.45422 * 178.62948 * 5 4 2 36 36 H 0.97000 * 120.00368 * 24.99888 * 8 6 5 37 37 H 1.09009 * 109.46728 * 60.00397 * 11 9 8 38 38 H 1.08999 * 109.46930 * 299.99466 * 12 11 9 39 39 H 1.08995 * 109.47803 * 59.99531 * 12 11 9 40 40 H 1.08999 * 109.47225 * 299.99270 * 13 12 11 41 41 H 1.09003 * 109.47565 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.47156 * 300.00195 * 17 14 13 43 43 H 1.08997 * 109.47216 * 179.97438 * 17 14 13 44 44 H 1.09002 * 109.47550 * 300.00387 * 18 11 9 45 45 H 1.08999 * 109.46914 * 60.00043 * 18 11 9 46 46 H 1.08998 * 109.58139 * 65.15443 * 19 6 5 47 47 H 1.08999 * 109.58520 * 185.43460 * 19 6 5 48 48 H 0.97004 * 120.00235 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5675 -0.8464 1.1712 6 6 3.9569 -1.6658 -0.0613 7 1 5.0412 -1.7697 -0.1014 8 7 3.3411 -2.9926 0.0190 9 6 3.8979 -4.0344 -0.6301 10 8 4.9085 -3.8732 -1.2810 11 6 3.2648 -5.3994 -0.5469 12 6 3.2221 -5.8538 0.9134 13 6 2.5798 -7.2399 0.9976 14 6 3.4041 -8.2346 0.1779 15 9 2.8165 -9.5020 0.2544 16 9 4.7061 -8.2923 0.6865 17 6 3.4467 -7.7802 -1.2825 18 6 4.0881 -6.3943 -1.3674 19 6 3.4650 -0.9486 -1.3226 20 7 2.0225 -0.7011 -1.1936 21 6 1.1537 -1.1155 -2.1675 22 1 0.1395 -1.3818 -1.9087 23 6 1.5765 -1.1932 -3.4874 24 7 2.6873 -0.5931 -3.8591 25 14 0.5688 -2.1497 -4.7361 26 1 -0.6269 -2.7260 -4.0703 27 1 0.1368 -1.2384 -5.8261 28 1 1.3951 -3.2446 -5.3047 29 1 -0.3633 0.5095 0.8925 30 1 -0.3634 -1.0276 -0.0051 31 1 -0.3633 0.5182 -0.8874 32 1 1.7660 -0.1641 2.1370 33 1 1.6025 -1.7234 1.2938 34 1 4.0061 0.1488 1.0991 35 1 3.9377 -1.3423 2.0685 36 1 2.5327 -3.1215 0.5393 37 1 2.2503 -5.3541 -0.9432 38 1 4.2365 -5.8991 1.3095 39 1 2.6353 -5.1449 1.4975 40 1 1.5654 -7.1950 0.6013 41 1 2.5498 -7.5639 2.0379 42 1 2.4323 -7.7353 -1.6788 43 1 4.0343 -8.4886 -1.8664 44 1 4.1181 -6.0704 -2.4077 45 1 5.1027 -6.4397 -0.9716 46 1 3.9903 0.0002 -1.4317 47 1 3.6540 -1.5735 -2.1954 48 1 2.9826 -0.6471 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071843841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:51 Heat of formation + Delta-G solvation = -158.711962 kcal Electronic energy + Delta-G solvation = -30780.349880 eV Core-core repulsion = 26504.499406 eV Total energy + Delta-G solvation = -4275.850474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.95001 -47.94915 -41.24757 -39.47974 -37.85778 -35.74879 -34.48104 -32.64039 -31.98551 -31.73753 -30.79328 -27.82182 -26.74225 -24.69688 -24.12133 -23.83671 -22.22628 -21.79556 -20.84307 -20.33180 -18.49555 -18.28209 -18.06394 -17.78727 -17.22838 -17.07570 -16.58858 -15.94448 -15.72080 -15.55878 -15.12004 -15.10321 -14.95782 -14.63882 -14.47440 -14.36419 -14.19422 -14.01259 -13.97854 -13.63605 -13.37486 -13.18316 -12.96780 -12.84613 -12.75213 -12.64978 -12.57557 -12.50458 -12.37976 -12.20731 -12.07236 -12.01665 -11.71640 -11.54653 -11.19481 -11.11955 -11.01607 -10.66195 -10.49549 -9.86519 -8.54444 -7.79612 -5.25504 1.42537 1.44815 1.53732 1.80690 2.38734 2.52680 2.80501 3.11684 3.34043 3.36821 3.41675 3.65977 3.77071 3.87823 3.97359 4.07079 4.09807 4.13852 4.21916 4.30163 4.33464 4.52780 4.63094 4.66184 4.70111 4.78598 4.80460 4.85759 4.86517 4.96658 4.96946 4.99912 5.07797 5.13998 5.15113 5.17171 5.27358 5.30608 5.36052 5.60277 5.64642 5.74030 5.77104 5.80688 6.46923 6.77888 7.21254 7.47728 7.95637 8.47208 9.25831 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.004257 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.657856 B = 6575.788618 C = 7562.703246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.008 0.992 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.059 0.941 8 N -0.689 5.689 9 C 0.510 3.490 10 O -0.595 6.595 11 C -0.105 4.105 12 C -0.101 4.101 13 C -0.148 4.148 14 C 0.280 3.720 15 F -0.210 7.210 16 F -0.213 7.213 17 C -0.152 4.152 18 C -0.096 4.096 19 C 0.174 3.826 20 N -0.593 5.593 21 C -0.233 4.233 22 H 0.080 0.920 23 C -0.056 4.056 24 N -0.940 5.940 25 Si 0.949 3.051 26 H -0.254 1.254 27 H -0.300 1.300 28 H -0.302 1.302 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.408 0.592 37 H 0.116 0.884 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.062 0.938 46 H -0.011 1.011 47 H 0.045 0.955 48 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 -11.582 15.193 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.026 0.974 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.077 0.923 8 N -0.339 5.339 9 C 0.298 3.702 10 O -0.476 6.476 11 C -0.126 4.126 12 C -0.138 4.138 13 C -0.186 4.186 14 C 0.245 3.755 15 F -0.191 7.191 16 F -0.194 7.194 17 C -0.190 4.190 18 C -0.134 4.134 19 C 0.047 3.953 20 N -0.317 5.317 21 C -0.363 4.363 22 H 0.097 0.903 23 C -0.251 4.251 24 N -0.587 5.587 25 Si 0.779 3.221 26 H -0.178 1.178 27 H -0.227 1.227 28 H -0.230 1.230 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.134 0.866 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.007 0.993 47 H 0.064 0.936 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.667 -11.467 14.633 18.782 hybrid contribution -0.003 -0.147 -1.549 1.556 sum -2.671 -11.614 13.084 17.698 Atomic orbital electron populations 1.21721 0.94576 1.01548 1.00685 1.20776 0.94239 0.93019 0.87213 0.97414 1.21944 0.94516 1.01291 0.97871 1.21654 0.97438 0.99661 0.96063 1.21414 0.96099 0.82995 0.97375 0.92262 1.45726 1.29606 1.07558 1.51036 1.21045 0.83892 0.87398 0.77914 1.90663 1.27865 1.86186 1.42921 1.21425 1.01608 0.90425 0.99173 1.21461 1.02677 0.96463 0.93224 1.22524 1.00748 0.93001 1.02296 1.21426 0.76957 0.80612 0.96542 1.92989 1.84171 1.44446 1.97453 1.92973 1.40645 1.96640 1.89148 1.22515 1.05543 0.97646 0.93317 1.21190 0.99084 0.92485 1.00621 1.20807 0.84256 0.94993 0.95289 1.44259 1.02120 1.65334 1.19975 1.19473 0.95401 1.35257 0.86217 0.90254 1.25780 0.98921 1.01333 0.99074 1.70186 1.26173 1.46285 1.16058 0.85463 0.78856 0.78099 0.79719 1.17784 1.22746 1.23014 0.90720 0.92566 0.94856 0.89321 0.91277 0.91458 0.89522 0.75431 0.86615 0.91401 0.87547 0.86276 0.87517 0.86747 0.89006 0.91780 0.91919 0.99272 0.93628 0.95003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 7.95 71.98 0.57 -3.48 16 2 C 0.15 5.48 3.50 44.97 0.16 5.64 16 3 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 4 C -0.12 -3.03 5.20 30.67 0.16 -2.87 16 5 C -0.11 -3.00 5.58 30.62 0.17 -2.83 16 6 C 0.13 4.66 2.81 45.07 0.13 4.78 16 7 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 8 N -0.69 -21.82 4.81 -442.15 -2.13 -23.95 16 9 C 0.51 17.69 7.12 87.66 0.62 18.31 16 10 O -0.60 -26.81 15.64 -3.03 -0.05 -26.86 16 11 C -0.11 -2.57 2.53 -11.54 -0.03 -2.60 16 12 C -0.10 -1.72 4.98 30.59 0.15 -1.56 16 13 C -0.15 -2.07 5.45 30.59 0.17 -1.90 16 14 C 0.28 5.43 2.10 30.60 0.06 5.49 16 15 F -0.21 -4.40 17.06 44.97 0.77 -3.64 16 16 F -0.21 -5.11 16.03 44.97 0.72 -4.39 16 17 C -0.15 -2.95 5.45 30.58 0.17 -2.79 16 18 C -0.10 -2.47 4.37 30.58 0.13 -2.33 16 19 C 0.17 8.39 4.88 86.37 0.42 8.81 16 20 N -0.59 -27.22 2.90 -675.21 -1.96 -29.18 16 21 C -0.23 -11.86 8.58 84.03 0.72 -11.13 16 22 H 0.08 3.82 6.23 -2.91 -0.02 3.80 16 23 C -0.06 -3.13 4.94 84.86 0.42 -2.71 16 24 N -0.94 -57.36 11.23 21.65 0.24 -57.12 16 25 Si 0.95 44.81 29.58 68.60 2.03 46.84 16 26 H -0.25 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 28 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.73 7.40 -2.39 -0.02 1.71 16 31 H 0.03 1.22 7.67 -2.39 -0.02 1.20 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.62 6.41 -2.38 -0.02 1.61 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.41 10.39 6.19 -92.71 -0.57 9.82 16 37 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.07 1.34 7.80 -2.39 -0.02 1.32 16 39 H 0.11 1.34 7.56 -2.39 -0.02 1.32 16 40 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 45 H 0.06 1.81 7.76 -2.39 -0.02 1.79 16 46 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 47 H 0.05 2.66 6.15 -2.39 -0.01 2.65 16 48 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -72.82 370.74 4.04 -68.79 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.39 Total: 20.68 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 4.03 Total: 8.82 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -3.84 Total: -110.24 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 9 Polarization: -9.51 SS G_CDS: 1.49 Total: -8.02 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -72.82 4.04 -68.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071843841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.926 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds