Wall clock time and date at job start Tue Mar 31 2020 16:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.58904 * 2 1 4 4 C 1.53185 * 109.58578 * 120.43067 * 2 1 3 5 5 C 1.53037 * 109.31322 * 174.42079 * 4 2 1 6 6 C 1.53036 * 109.53885 * 298.63362 * 5 4 2 7 7 H 1.09003 * 109.50169 * 301.40859 * 6 5 4 8 8 N 1.46501 * 109.52694 * 181.33195 * 6 5 4 9 9 C 1.34773 * 120.00276 * 155.14579 * 8 6 5 10 10 O 1.21474 * 119.99946 * 0.02562 * 9 8 6 11 11 C 1.48462 * 119.99918 * 179.97438 * 9 8 6 12 12 C 1.39530 * 120.54618 * 179.71729 * 11 9 8 13 13 C 1.38770 * 118.26161 * 179.76102 * 12 11 9 14 14 N 1.32201 * 119.14350 * 0.51935 * 13 12 11 15 15 C 1.31879 * 121.04054 * 359.74383 * 14 13 12 16 16 C 1.50702 * 119.04400 * 179.97438 * 15 14 13 17 17 C 1.53000 * 117.49535 * 8.73015 * 16 15 14 18 18 C 1.52994 * 117.50049 * 300.06750 * 16 15 14 19 19 N 1.31582 * 121.91515 * 359.97438 * 15 14 13 20 20 C 1.53191 * 109.31401 * 61.36385 * 6 5 4 21 21 N 1.46923 * 108.77672 * 305.36978 * 20 6 5 22 22 C 1.36936 * 120.62934 * 233.59047 * 21 20 6 23 23 H 1.07995 * 120.00547 * 149.22205 * 22 21 20 24 24 C 1.38822 * 119.99709 * 329.21595 * 22 21 20 25 25 N 1.31620 * 119.99894 * 346.00001 * 24 22 21 26 26 Si 1.86801 * 119.99668 * 165.99941 * 24 22 21 27 27 H 1.48494 * 109.47391 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46889 * 120.00367 * 26 24 22 29 29 H 1.48491 * 109.47167 * 239.99841 * 26 24 22 30 30 H 1.09000 * 109.46870 * 180.28025 * 1 2 3 31 31 H 1.08992 * 109.47013 * 300.28332 * 1 2 3 32 32 H 1.08997 * 109.46833 * 60.28132 * 1 2 3 33 33 H 1.09004 * 109.49961 * 294.37500 * 4 2 1 34 34 H 1.09005 * 109.50106 * 54.46724 * 4 2 1 35 35 H 1.09005 * 109.45981 * 178.61036 * 5 4 2 36 36 H 1.08999 * 109.46060 * 58.65346 * 5 4 2 37 37 H 0.97008 * 120.00080 * 335.14842 * 8 6 5 38 38 H 1.07996 * 120.87479 * 0.02562 * 12 11 9 39 39 H 1.08005 * 120.42583 * 180.23573 * 13 12 11 40 40 H 1.09007 * 115.54598 * 154.39332 * 16 15 14 41 41 H 1.09003 * 117.50286 * 359.97438 * 17 16 15 42 42 H 1.09001 * 117.49392 * 145.01499 * 17 16 15 43 43 H 1.08993 * 117.49888 * 214.97403 * 18 16 15 44 44 H 1.09005 * 117.50050 * 359.97438 * 18 16 15 45 45 H 1.08998 * 109.58839 * 185.57402 * 20 6 5 46 46 H 1.09005 * 109.58192 * 65.15315 * 20 6 5 47 47 H 0.96997 * 119.99522 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6657 -0.0656 7 1 3.4983 -2.6529 -0.0087 8 7 5.4141 -1.8060 -0.1202 9 6 5.9669 -2.8465 -0.7745 10 8 5.2569 -3.6679 -1.3193 11 6 7.4437 -2.9883 -0.8302 12 6 8.0281 -4.0643 -1.4994 13 6 9.4130 -4.1475 -1.5262 14 7 10.1259 -3.2182 -0.9132 15 6 9.5412 -2.2168 -0.2849 16 6 10.3975 -1.1826 0.3994 17 6 11.9066 -1.2406 0.1542 18 6 11.3342 -1.6634 1.5095 19 7 8.2319 -2.0944 -0.2382 20 6 3.4650 -0.9453 -1.3250 21 7 2.0226 -0.6980 -1.1954 22 6 1.1538 -1.1099 -2.1704 23 1 0.1443 -1.3920 -1.9102 24 6 1.5706 -1.1649 -3.4934 25 7 2.6879 -0.5715 -3.8566 26 14 0.5458 -2.0812 -4.7582 27 1 -0.6549 -2.6559 -4.1000 28 1 0.1218 -1.1411 -5.8267 29 1 1.3555 -3.1744 -5.3534 30 1 -0.3633 -1.0277 0.0050 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5095 -0.8925 33 1 1.7660 -0.1696 2.1366 34 1 1.6029 -1.7270 1.2891 35 1 3.9378 -1.3475 2.0652 36 1 4.0061 0.1459 1.0994 37 1 5.9812 -1.1499 0.3145 38 1 7.4186 -4.8104 -1.9873 39 1 9.9021 -4.9636 -2.0374 40 1 9.9438 -0.1983 0.5149 41 1 12.2802 -2.0269 -0.5018 42 1 12.4457 -0.2943 0.1087 43 1 11.4971 -0.9952 2.3550 44 1 11.3309 -2.7276 1.7452 45 1 3.6519 -1.5690 -2.1992 46 1 3.9904 0.0038 -1.4317 47 1 2.9793 -0.6103 -4.7809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071862763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:00 Heat of formation + Delta-G solvation = 60.500864 kcal Electronic energy + Delta-G solvation = -28341.043405 eV Core-core repulsion = 24525.387899 eV Total energy + Delta-G solvation = -3815.655506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41118 -39.39041 -37.69359 -37.14513 -34.56609 -33.93738 -32.79243 -31.93135 -30.63835 -29.84026 -26.54079 -25.49848 -25.18131 -24.68555 -22.62858 -22.39414 -22.04683 -20.62354 -20.09382 -19.30175 -18.03306 -17.77887 -16.43021 -16.03982 -15.60811 -15.50492 -15.39013 -15.12329 -14.67708 -14.25945 -14.10636 -13.89583 -13.77791 -13.47709 -13.35067 -12.75623 -12.48582 -12.39459 -11.87592 -11.79948 -11.47495 -11.21270 -11.13547 -11.11422 -10.92848 -10.86240 -10.74033 -10.72168 -10.55738 -10.39924 -10.25156 -10.14158 -9.94227 -9.67592 -9.50312 -9.44993 -9.31942 -8.58421 -8.42012 -6.58593 -5.73466 -3.19752 0.42464 0.73584 2.84503 3.14962 3.42016 3.46973 3.49611 3.50895 3.51684 3.80087 3.98475 4.49977 4.56974 4.58887 4.65138 4.74439 4.82728 4.96322 5.31312 5.34818 5.37644 5.37745 5.44543 5.54341 5.57486 5.59225 5.69904 5.81548 5.93298 5.96747 6.09544 6.12226 6.28102 6.30047 6.40085 6.45351 6.49045 6.63406 6.67214 6.73596 6.88753 7.06051 7.14145 7.30961 7.72806 7.72902 7.86851 7.91724 8.43940 8.52156 9.25257 9.89052 10.45288 11.34607 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003165 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.848786 B = 8845.284517 C =10008.891160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.114 3.886 7 H 0.084 0.916 8 N -0.693 5.693 9 C 0.563 3.437 10 O -0.516 6.516 11 C 0.147 3.853 12 C -0.179 4.179 13 C 0.152 3.848 14 N -0.509 5.509 15 C 0.346 3.654 16 C -0.102 4.102 17 C -0.153 4.153 18 C -0.156 4.156 19 N -0.491 5.491 20 C 0.169 3.831 21 N -0.583 5.583 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.006 3.994 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.289 1.289 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.404 0.596 38 H 0.162 0.838 39 H 0.177 0.823 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.019 0.981 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.485 -2.411 10.952 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.009 3.991 7 H 0.102 0.898 8 N -0.343 5.343 9 C 0.345 3.655 10 O -0.390 6.390 11 C -0.001 4.001 12 C -0.202 4.202 13 C -0.015 4.015 14 N -0.224 5.224 15 C 0.078 3.922 16 C -0.122 4.122 17 C -0.191 4.191 18 C -0.194 4.194 19 N -0.207 5.207 20 C 0.042 3.958 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.193 4.193 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.215 1.215 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.239 0.761 38 H 0.179 0.821 39 H 0.194 0.806 40 H 0.149 0.851 41 H 0.128 0.872 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.037 0.963 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.465 -2.300 10.827 19.018 hybrid contribution -0.666 -0.787 -1.060 1.479 sum 14.799 -3.087 9.767 17.998 Atomic orbital electron populations 1.21798 0.95962 1.01372 1.00229 1.20505 0.93101 0.93601 0.87017 0.95672 1.22043 0.94171 1.01345 0.98964 1.21674 0.97452 0.99762 0.96533 1.22135 0.77107 1.01164 0.98733 0.89779 1.45950 1.08916 1.26040 1.53377 1.17717 0.85023 0.82684 0.80099 1.90843 1.61046 1.42443 1.44705 1.21890 0.95224 0.90668 0.92356 1.23008 0.97174 0.99916 1.00077 1.23300 0.90435 0.95479 0.92287 1.68014 1.41896 1.03237 1.09209 1.22063 0.87070 0.91598 0.91422 1.20643 0.90880 0.97353 1.03276 1.23040 0.92905 1.03816 0.99309 1.22995 1.01673 1.02274 0.92440 1.68059 1.06068 1.27901 1.18679 1.21062 0.83737 0.96928 0.94037 1.44013 1.02536 1.64824 1.19256 1.19170 0.95428 1.37830 0.85749 0.91205 1.25135 0.97721 0.99215 0.97182 1.70006 1.23668 1.44140 1.16602 0.86254 0.79717 0.79417 0.81577 1.20184 1.21787 1.21527 0.92821 0.94347 0.91966 0.92583 0.92042 0.92970 0.92095 0.76118 0.82060 0.80639 0.85055 0.87210 0.88098 0.87853 0.88616 0.88922 0.96316 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.96 37.16 0.30 -2.26 16 2 C 0.16 3.37 3.50 -67.60 -0.24 3.13 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.13 5.37 -26.62 -0.14 -2.28 16 5 C -0.12 -1.90 5.36 -26.69 -0.14 -2.05 16 6 C 0.11 2.24 2.60 -67.81 -0.18 2.06 16 7 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 8 N -0.69 -12.10 5.08 -54.44 -0.28 -12.38 16 9 C 0.56 10.37 7.80 -12.05 -0.09 10.28 16 10 O -0.52 -11.30 16.09 5.39 0.09 -11.21 16 11 C 0.15 2.27 6.79 -82.63 -0.56 1.71 16 12 C -0.18 -2.31 9.72 -38.90 -0.38 -2.68 16 13 C 0.15 1.61 11.31 -17.20 -0.19 1.42 16 14 N -0.51 -6.06 9.32 -10.74 -0.10 -6.16 16 15 C 0.35 4.38 7.31 -157.30 -1.15 3.24 16 16 C -0.10 -0.99 6.23 -91.77 -0.57 -1.57 16 17 C -0.15 -1.20 10.01 -26.69 -0.27 -1.46 16 18 C -0.16 -1.21 10.24 -26.69 -0.27 -1.48 16 19 N -0.49 -7.03 9.60 -7.32 -0.07 -7.10 16 20 C 0.17 4.13 4.84 -3.71 -0.02 4.11 16 21 N -0.58 -14.53 2.98 -164.78 -0.49 -15.02 16 22 C -0.25 -6.90 8.54 -15.06 -0.13 -7.03 16 23 H 0.07 1.86 6.27 -52.49 -0.33 1.53 16 24 C 0.01 0.18 4.97 -17.43 -0.09 0.10 16 25 N -0.90 -26.76 11.21 55.49 0.62 -26.14 16 26 Si 0.90 22.35 29.58 -169.99 -5.03 17.33 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H 0.05 1.02 7.44 -51.93 -0.39 0.64 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.26 7.63 -51.93 -0.40 0.87 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 6.15 7.99 -40.82 -0.33 5.82 16 38 H 0.16 1.95 7.74 -52.49 -0.41 1.54 16 39 H 0.18 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.11 0.94 7.54 -51.93 -0.39 0.55 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 2.66 6.17 -51.93 -0.32 2.34 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -32.67 382.00 -10.78 -43.46 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.16 Total: 6.24 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -4.13 Total: 5.24 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -0.32 Total: -66.81 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.67 -10.78 -43.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071862763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.958 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds