Wall clock time and date at job start Tue Mar 31 2020 16:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.58904 * 2 1 4 4 C 1.53185 * 109.58578 * 120.43067 * 2 1 3 5 5 C 1.53037 * 109.31322 * 174.42079 * 4 2 1 6 6 C 1.53036 * 109.53885 * 298.63362 * 5 4 2 7 7 H 1.09003 * 109.50169 * 301.40859 * 6 5 4 8 8 N 1.46501 * 109.52694 * 181.33195 * 6 5 4 9 9 C 1.34773 * 120.00276 * 155.14579 * 8 6 5 10 10 O 1.21474 * 119.99946 * 0.02562 * 9 8 6 11 11 C 1.48462 * 119.99918 * 179.97438 * 9 8 6 12 12 C 1.39530 * 120.54618 * 179.71729 * 11 9 8 13 13 C 1.38770 * 118.26161 * 179.76102 * 12 11 9 14 14 N 1.32201 * 119.14350 * 0.51935 * 13 12 11 15 15 C 1.31879 * 121.04054 * 359.74383 * 14 13 12 16 16 C 1.50702 * 119.04400 * 179.97438 * 15 14 13 17 17 C 1.53000 * 117.49535 * 8.73015 * 16 15 14 18 18 C 1.52994 * 117.50049 * 300.06750 * 16 15 14 19 19 N 1.31582 * 121.91515 * 359.97438 * 15 14 13 20 20 C 1.53191 * 109.31401 * 61.36385 * 6 5 4 21 21 N 1.46923 * 108.77672 * 305.36978 * 20 6 5 22 22 C 1.36936 * 120.62934 * 233.59047 * 21 20 6 23 23 H 1.07995 * 120.00547 * 149.22205 * 22 21 20 24 24 C 1.38822 * 119.99709 * 329.21595 * 22 21 20 25 25 N 1.31620 * 119.99894 * 346.00001 * 24 22 21 26 26 Si 1.86801 * 119.99668 * 165.99941 * 24 22 21 27 27 H 1.48494 * 109.47391 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46889 * 120.00367 * 26 24 22 29 29 H 1.48491 * 109.47167 * 239.99841 * 26 24 22 30 30 H 1.09000 * 109.46870 * 180.28025 * 1 2 3 31 31 H 1.08992 * 109.47013 * 300.28332 * 1 2 3 32 32 H 1.08997 * 109.46833 * 60.28132 * 1 2 3 33 33 H 1.09004 * 109.49961 * 294.37500 * 4 2 1 34 34 H 1.09005 * 109.50106 * 54.46724 * 4 2 1 35 35 H 1.09005 * 109.45981 * 178.61036 * 5 4 2 36 36 H 1.08999 * 109.46060 * 58.65346 * 5 4 2 37 37 H 0.97008 * 120.00080 * 335.14842 * 8 6 5 38 38 H 1.07996 * 120.87479 * 0.02562 * 12 11 9 39 39 H 1.08005 * 120.42583 * 180.23573 * 13 12 11 40 40 H 1.09007 * 115.54598 * 154.39332 * 16 15 14 41 41 H 1.09003 * 117.50286 * 359.97438 * 17 16 15 42 42 H 1.09001 * 117.49392 * 145.01499 * 17 16 15 43 43 H 1.08993 * 117.49888 * 214.97403 * 18 16 15 44 44 H 1.09005 * 117.50050 * 359.97438 * 18 16 15 45 45 H 1.08998 * 109.58839 * 185.57402 * 20 6 5 46 46 H 1.09005 * 109.58192 * 65.15315 * 20 6 5 47 47 H 0.96997 * 119.99522 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6657 -0.0656 7 1 3.4983 -2.6529 -0.0087 8 7 5.4141 -1.8060 -0.1202 9 6 5.9669 -2.8465 -0.7745 10 8 5.2569 -3.6679 -1.3193 11 6 7.4437 -2.9883 -0.8302 12 6 8.0281 -4.0643 -1.4994 13 6 9.4130 -4.1475 -1.5262 14 7 10.1259 -3.2182 -0.9132 15 6 9.5412 -2.2168 -0.2849 16 6 10.3975 -1.1826 0.3994 17 6 11.9066 -1.2406 0.1542 18 6 11.3342 -1.6634 1.5095 19 7 8.2319 -2.0944 -0.2382 20 6 3.4650 -0.9453 -1.3250 21 7 2.0226 -0.6980 -1.1954 22 6 1.1538 -1.1099 -2.1704 23 1 0.1443 -1.3920 -1.9102 24 6 1.5706 -1.1649 -3.4934 25 7 2.6879 -0.5715 -3.8566 26 14 0.5458 -2.0812 -4.7582 27 1 -0.6549 -2.6559 -4.1000 28 1 0.1218 -1.1411 -5.8267 29 1 1.3555 -3.1744 -5.3534 30 1 -0.3633 -1.0277 0.0050 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5095 -0.8925 33 1 1.7660 -0.1696 2.1366 34 1 1.6029 -1.7270 1.2891 35 1 3.9378 -1.3475 2.0652 36 1 4.0061 0.1459 1.0994 37 1 5.9812 -1.1499 0.3145 38 1 7.4186 -4.8104 -1.9873 39 1 9.9021 -4.9636 -2.0374 40 1 9.9438 -0.1983 0.5149 41 1 12.2802 -2.0269 -0.5018 42 1 12.4457 -0.2943 0.1087 43 1 11.4971 -0.9952 2.3550 44 1 11.3309 -2.7276 1.7452 45 1 3.6519 -1.5690 -2.1992 46 1 3.9904 0.0038 -1.4317 47 1 2.9793 -0.6103 -4.7809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071862763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:59 Heat of formation + Delta-G solvation = 39.568627 kcal Electronic energy + Delta-G solvation = -28341.951095 eV Core-core repulsion = 24525.387899 eV Total energy + Delta-G solvation = -3816.563196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.44480 -40.86004 -39.28494 -37.92563 -36.17299 -35.06459 -34.62570 -32.93965 -32.17784 -31.73955 -28.02532 -27.21753 -26.19615 -26.04668 -24.08817 -23.26685 -23.16274 -22.04616 -21.51800 -20.91797 -19.23337 -18.80917 -18.34226 -17.37513 -16.87521 -16.78896 -16.61794 -16.48889 -15.89245 -15.61052 -15.52810 -15.31994 -15.11130 -14.95902 -14.83995 -14.47051 -14.15770 -13.53195 -13.24868 -13.10607 -12.79572 -12.73495 -12.58081 -12.39611 -12.31849 -12.14821 -12.09010 -12.00973 -11.99074 -11.90576 -11.75188 -11.57959 -11.37915 -11.31160 -11.15892 -10.57612 -10.47427 -10.40796 -10.18256 -8.62808 -7.86740 -5.35101 -0.68869 -0.20120 1.40218 1.43869 1.52659 1.56921 1.84316 2.48028 2.50697 2.56340 2.86604 3.14900 3.29629 3.43477 3.62181 3.70556 3.88483 3.91282 3.92916 4.06298 4.12540 4.14147 4.22548 4.35887 4.48094 4.53849 4.60286 4.69454 4.78465 4.81956 4.87112 4.97509 4.99964 5.05244 5.11814 5.15658 5.22012 5.24238 5.28286 5.34229 5.35717 5.54458 5.58865 5.68023 5.69725 5.74929 6.34731 6.43551 6.83744 7.02008 7.15031 7.87257 8.38018 9.18745 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003165 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.848786 B = 8845.284517 C =10008.891160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.021 0.979 4 C -0.116 4.116 5 C -0.108 4.108 6 C 0.128 3.872 7 H 0.060 0.940 8 N -0.685 5.685 9 C 0.559 3.441 10 O -0.561 6.561 11 C 0.123 3.877 12 C -0.184 4.184 13 C 0.168 3.832 14 N -0.509 5.509 15 C 0.338 3.662 16 C -0.125 4.125 17 C -0.142 4.142 18 C -0.142 4.142 19 N -0.504 5.504 20 C 0.183 3.817 21 N -0.602 5.602 22 C -0.249 4.249 23 H 0.076 0.924 24 C -0.054 4.054 25 N -0.936 5.936 26 Si 0.959 3.041 27 H -0.261 1.261 28 H -0.289 1.289 29 H -0.299 1.299 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.416 0.584 38 H 0.164 0.836 39 H 0.222 0.778 40 H 0.135 0.865 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.089 0.911 45 H 0.042 0.958 46 H -0.005 1.005 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.723 -2.409 13.348 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.156 4.156 5 C -0.146 4.146 6 C 0.022 3.978 7 H 0.078 0.922 8 N -0.335 5.335 9 C 0.343 3.657 10 O -0.438 6.438 11 C -0.024 4.024 12 C -0.207 4.207 13 C 0.000 4.000 14 N -0.223 5.223 15 C 0.071 3.929 16 C -0.145 4.145 17 C -0.179 4.179 18 C -0.180 4.180 19 N -0.220 5.220 20 C 0.055 3.945 21 N -0.326 5.326 22 C -0.379 4.379 23 H 0.094 0.906 24 C -0.249 4.249 25 N -0.582 5.582 26 Si 0.787 3.213 27 H -0.185 1.185 28 H -0.216 1.216 29 H -0.227 1.227 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.254 0.746 38 H 0.182 0.818 39 H 0.238 0.762 40 H 0.153 0.847 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.108 0.892 45 H 0.060 0.940 46 H 0.014 0.986 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.699 -2.265 13.284 21.458 hybrid contribution -0.971 -0.768 -1.769 2.159 sum 15.728 -3.033 11.514 19.727 Atomic orbital electron populations 1.21728 0.94573 1.01230 1.01088 1.20829 0.94427 0.93359 0.86676 0.96130 1.21947 0.94115 1.01078 0.98411 1.21655 0.97409 0.99892 0.95631 1.21708 0.78155 0.99725 0.98187 0.92200 1.45818 1.08205 1.26269 1.53220 1.18233 0.86514 0.82014 0.78906 1.90804 1.62609 1.43975 1.46415 1.21508 0.93529 0.92582 0.94786 1.23180 0.98470 0.99241 0.99767 1.24009 0.89342 0.95745 0.90856 1.68157 1.41723 1.03302 1.09121 1.22679 0.86712 0.92307 0.91211 1.20809 0.91650 0.96947 1.05119 1.23118 0.91172 1.04556 0.99064 1.23079 0.99751 1.02350 0.92842 1.68009 1.06896 1.27889 1.19241 1.20708 0.84032 0.95127 0.94594 1.44310 1.02338 1.65714 1.20269 1.19513 0.95853 1.36243 0.86340 0.90647 1.25879 0.99043 1.00770 0.99218 1.70173 1.25522 1.46247 1.16260 0.85324 0.78655 0.77890 0.79405 1.18521 1.21617 1.22654 0.93423 0.90241 0.94314 0.88430 0.92594 0.89654 0.91029 0.74645 0.81796 0.76185 0.84699 0.87918 0.86074 0.85741 0.89248 0.93956 0.98649 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 7.96 71.98 0.57 -4.06 16 2 C 0.15 6.10 3.50 44.97 0.16 6.26 16 3 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -3.64 5.37 30.67 0.16 -3.47 16 5 C -0.11 -3.32 5.36 30.62 0.16 -3.15 16 6 C 0.13 5.15 2.60 45.07 0.12 5.27 16 7 H 0.06 2.72 7.58 -2.39 -0.02 2.70 16 8 N -0.69 -24.61 5.08 -444.46 -2.26 -26.87 16 9 C 0.56 21.62 7.80 86.97 0.68 22.30 16 10 O -0.56 -26.10 16.09 -3.63 -0.06 -26.16 16 11 C 0.12 3.88 6.79 42.00 0.29 4.16 16 12 C -0.18 -4.71 9.72 22.71 0.22 -4.49 16 13 C 0.17 3.25 11.31 84.76 0.96 4.21 16 14 N -0.51 -11.25 9.32 -187.88 -1.75 -13.00 16 15 C 0.34 8.23 7.31 138.79 1.01 9.25 16 16 C -0.13 -2.25 6.23 -11.54 -0.07 -2.32 16 17 C -0.14 -1.87 10.01 30.62 0.31 -1.57 16 18 C -0.14 -1.85 10.24 30.62 0.31 -1.54 16 19 N -0.50 -14.42 9.60 -177.07 -1.70 -16.11 16 20 C 0.18 9.36 4.84 86.36 0.42 9.77 16 21 N -0.60 -30.80 2.98 -675.23 -2.01 -32.82 16 22 C -0.25 -14.00 8.54 84.04 0.72 -13.28 16 23 H 0.08 4.07 6.27 -2.91 -0.02 4.06 16 24 C -0.05 -3.18 4.97 84.86 0.42 -2.76 16 25 N -0.94 -58.65 11.21 21.65 0.24 -58.41 16 26 Si 0.96 47.57 29.58 68.60 2.03 49.60 16 27 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 28 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 29 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 30 H 0.05 1.75 7.44 -2.39 -0.02 1.73 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.54 7.63 -2.39 -0.02 1.53 16 33 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.42 12.75 7.99 -92.70 -0.74 12.01 16 38 H 0.16 4.04 7.74 -2.91 -0.02 4.02 16 39 H 0.22 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.14 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.10 1.53 7.54 -2.39 -0.02 1.52 16 42 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.04 2.59 6.17 -2.39 -0.01 2.57 16 46 H 0.00 -0.25 8.14 -2.38 -0.02 -0.26 16 47 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -76.52 382.00 1.18 -75.34 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.24 Total: 23.86 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: 6.44 Total: 24.56 kcal Atomic # 7 Polarization: -139.73 SS G_CDS: -7.48 Total: -147.21 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.06 Total: -26.16 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -76.52 1.18 -75.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071862763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.912 kcal (2) G-P(sol) polarization free energy of solvation -76.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds