Wall clock time and date at job start Tue Mar 31 2020 16:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53044 * 109.53884 * 298.63377 * 5 4 2 7 7 H 1.08998 * 109.49761 * 181.31591 * 6 5 4 8 8 N 1.46497 * 109.49704 * 301.41588 * 6 5 4 9 9 C 1.34771 * 119.99896 * 204.99787 * 8 6 5 10 10 O 1.21477 * 119.99991 * 359.97438 * 9 8 6 11 11 C 1.48455 * 120.00097 * 179.97438 * 9 8 6 12 12 C 1.39544 * 120.55261 * 180.02562 * 11 9 8 13 13 C 1.38758 * 118.26621 * 180.02562 * 12 11 9 14 14 N 1.32205 * 119.14435 * 0.02562 * 13 12 11 15 15 C 1.31880 * 121.03878 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.04108 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.49793 * 8.62636 * 16 15 14 18 18 C 1.52998 * 60.00153 * 252.50923 * 17 16 15 19 19 N 1.31581 * 121.91757 * 359.72258 * 15 14 13 20 20 C 1.53191 * 109.30755 * 61.36274 * 6 5 4 21 21 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 22 22 C 1.36945 * 120.63269 * 6.51524 * 21 2 1 23 23 H 1.07999 * 119.99653 * 330.19743 * 22 21 2 24 24 C 1.38810 * 120.00178 * 150.19385 * 22 21 2 25 25 N 1.31620 * 119.99942 * 344.48884 * 24 22 21 26 26 Si 1.86795 * 119.99872 * 164.48482 * 24 22 21 27 27 H 1.48497 * 109.47152 * 60.00445 * 26 24 22 28 28 H 1.48507 * 109.47028 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47373 * 300.00024 * 26 24 22 30 30 H 1.09000 * 109.47021 * 300.00230 * 1 2 3 31 31 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 32 32 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50293 * 294.51312 * 4 2 1 34 34 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 35 35 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 36 36 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 37 37 H 0.96997 * 120.00285 * 24.99505 * 8 6 5 38 38 H 1.07997 * 120.86540 * 359.97438 * 12 11 9 39 39 H 1.07997 * 120.42776 * 180.02562 * 13 12 11 40 40 H 1.08998 * 115.54727 * 154.33536 * 16 15 14 41 41 H 1.08999 * 117.50053 * 0.02562 * 17 16 15 42 42 H 1.09003 * 117.49872 * 145.01677 * 17 16 15 43 43 H 1.09000 * 117.49557 * 252.51447 * 18 17 16 44 44 H 1.08992 * 117.49916 * 107.48930 * 18 17 16 45 45 H 1.09006 * 109.58889 * 65.15964 * 20 6 5 46 46 H 1.09004 * 109.58178 * 185.43292 * 20 6 5 47 47 H 0.97005 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9604 -1.6610 -0.0597 7 1 5.0449 -1.7627 -0.0986 8 7 3.3465 -2.9888 0.0184 9 6 3.9059 -4.0290 -0.6308 10 8 4.9188 -3.8655 -1.2811 11 6 3.2841 -5.3748 -0.5511 12 6 3.8539 -6.4600 -1.2182 13 6 3.2330 -7.6963 -1.1118 14 7 2.1316 -7.8035 -0.3885 15 6 1.6193 -6.7572 0.2295 16 6 0.3617 -6.9304 1.0416 17 6 -0.1413 -8.3573 1.2692 18 6 -0.8880 -7.4266 0.3115 19 7 2.1770 -5.5673 0.1616 20 6 3.4685 -0.9437 -1.3209 21 7 2.0254 -0.6991 -1.1934 22 6 1.1585 -1.1154 -2.1684 23 1 0.1447 -1.3842 -1.9107 24 6 1.5827 -1.1917 -3.4879 25 7 2.6925 -0.5888 -3.8583 26 14 0.5784 -2.1500 -4.7379 27 1 -0.7832 -1.5650 -4.8321 28 1 1.2412 -2.0786 -6.0649 29 1 0.4792 -3.5686 -4.3104 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7639 -0.1654 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1528 1.1022 36 1 3.9380 -1.3391 2.0704 37 1 2.5375 -3.1194 0.5374 38 1 4.7540 -6.3405 -1.8028 39 1 3.6442 -8.5598 -1.6134 40 1 0.2209 -6.2120 1.8491 41 1 0.4376 -9.1708 0.8319 42 1 -0.6131 -8.5780 2.2268 43 1 -1.8510 -7.0349 0.6391 44 1 -0.8006 -7.6277 -0.7561 45 1 3.9921 0.0062 -1.4287 46 1 3.6599 -1.5675 -2.1940 47 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071862765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:08 Heat of formation + Delta-G solvation = 62.866319 kcal Electronic energy + Delta-G solvation = -29411.071839 eV Core-core repulsion = 25595.518907 eV Total energy + Delta-G solvation = -3815.552932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.26234 -39.38323 -37.66073 -37.00554 -34.27075 -33.78064 -32.70808 -31.79262 -30.60499 -29.87337 -26.47842 -25.52142 -25.05009 -24.78960 -22.49154 -22.26334 -22.10669 -20.57002 -20.24862 -18.76079 -18.04738 -17.68826 -16.29044 -15.94332 -15.56497 -15.32896 -15.26093 -14.82429 -14.72340 -14.17163 -14.07916 -13.86856 -13.81518 -13.43879 -13.12974 -12.81524 -12.48756 -12.34377 -11.93165 -11.66671 -11.24947 -11.14950 -11.07058 -11.00164 -10.96486 -10.87059 -10.74220 -10.70082 -10.60314 -10.38112 -10.32654 -10.01660 -9.94024 -9.53517 -9.45243 -9.35500 -9.20571 -8.43904 -8.41686 -6.57993 -5.74064 -3.17635 0.57699 0.88582 2.99085 3.35183 3.38250 3.44710 3.45213 3.59555 3.68064 3.96566 4.13834 4.51091 4.69390 4.72767 4.80336 4.88484 4.97122 5.09001 5.31844 5.36527 5.41507 5.44997 5.52194 5.52396 5.60980 5.66363 5.71104 5.96654 6.01815 6.05042 6.12647 6.15325 6.23917 6.34385 6.37003 6.45302 6.51211 6.63149 6.67181 6.80457 6.89933 7.06722 7.14216 7.35021 7.66406 7.85255 7.89793 8.08758 8.50415 8.61799 9.24947 9.89255 10.45623 11.34173 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009905 B = 0.004673 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.249945 B = 5991.034135 C = 6322.885209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.114 3.886 7 H 0.078 0.922 8 N -0.671 5.671 9 C 0.565 3.435 10 O -0.532 6.532 11 C 0.150 3.850 12 C -0.182 4.182 13 C 0.150 3.850 14 N -0.511 5.511 15 C 0.346 3.654 16 C -0.101 4.101 17 C -0.154 4.154 18 C -0.154 4.154 19 N -0.486 5.486 20 C 0.163 3.837 21 N -0.582 5.582 22 C -0.248 4.248 23 H 0.067 0.933 24 C 0.007 3.993 25 N -0.899 5.899 26 Si 0.895 3.105 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.288 1.288 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.407 0.593 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.131 0.869 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.028 0.972 46 H 0.095 0.905 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -11.523 11.719 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.009 3.991 7 H 0.096 0.904 8 N -0.321 5.321 9 C 0.347 3.653 10 O -0.409 6.409 11 C 0.002 3.998 12 C -0.204 4.204 13 C -0.017 4.017 14 N -0.225 5.225 15 C 0.079 3.921 16 C -0.121 4.121 17 C -0.192 4.192 18 C -0.192 4.192 19 N -0.203 5.203 20 C 0.036 3.964 21 N -0.305 5.305 22 C -0.377 4.377 23 H 0.084 0.916 24 C -0.192 4.192 25 N -0.543 5.543 26 Si 0.725 3.275 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.215 1.215 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.244 0.756 38 H 0.178 0.822 39 H 0.192 0.808 40 H 0.148 0.852 41 H 0.127 0.873 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.115 0.885 45 H 0.046 0.954 46 H 0.113 0.887 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.529 -11.389 11.613 16.337 hybrid contribution -0.025 -0.382 -1.178 1.239 sum -1.554 -11.772 10.435 15.807 Atomic orbital electron populations 1.21789 0.96096 1.01281 1.00136 1.20457 0.92923 0.93588 0.87084 0.95733 1.22084 0.95053 1.00899 0.99120 1.21687 0.97178 1.00113 0.96618 1.21928 0.97057 0.81425 0.98737 0.90376 1.45734 1.29064 1.07949 1.49333 1.17643 0.84114 0.82989 0.80528 1.90771 1.24771 1.84058 1.41270 1.21879 0.90604 0.95501 0.91812 1.22968 1.03062 0.93649 1.00753 1.23255 0.89536 0.96934 0.91986 1.67999 1.11932 1.33758 1.08819 1.22055 0.94387 0.83623 0.92052 1.20619 0.89915 1.00100 1.01418 1.23015 1.02634 0.92510 1.01016 1.22988 0.94621 1.02658 0.98970 1.68072 1.09036 1.25140 1.18014 1.21163 0.83946 0.97115 0.94163 1.44011 1.02565 1.64776 1.19126 1.19023 0.95060 1.37657 0.85982 0.91578 1.25038 0.97793 0.99470 0.96940 1.69975 1.23975 1.43578 1.16799 0.86496 0.79709 0.80254 0.81056 1.20883 1.21622 1.21455 0.94410 0.92086 0.92910 0.92767 0.92467 0.90916 0.92950 0.75598 0.82229 0.80794 0.85162 0.87305 0.88236 0.87792 0.88532 0.95383 0.88729 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.95 37.16 0.30 -2.19 16 2 C 0.17 3.29 3.49 -67.60 -0.24 3.05 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.14 5.21 -26.61 -0.14 -2.28 16 5 C -0.12 -1.87 5.59 -26.69 -0.15 -2.02 16 6 C 0.11 2.19 2.81 -67.81 -0.19 2.00 16 7 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 8 N -0.67 -12.68 4.91 -54.44 -0.27 -12.95 16 9 C 0.56 11.16 7.80 -12.05 -0.09 11.07 16 10 O -0.53 -11.77 16.09 5.39 0.09 -11.68 16 11 C 0.15 2.61 6.79 -82.63 -0.56 2.05 16 12 C -0.18 -2.63 9.72 -38.90 -0.38 -3.01 16 13 C 0.15 1.83 11.31 -17.20 -0.19 1.63 16 14 N -0.51 -6.95 9.32 -10.74 -0.10 -7.05 16 15 C 0.35 5.07 7.31 -157.30 -1.15 3.92 16 16 C -0.10 -1.17 6.23 -91.77 -0.57 -1.75 16 17 C -0.15 -1.42 10.01 -26.73 -0.27 -1.69 16 18 C -0.15 -1.58 10.23 -26.73 -0.27 -1.85 16 19 N -0.49 -8.05 9.60 -7.32 -0.07 -8.12 16 20 C 0.16 3.87 4.88 -3.71 -0.02 3.85 16 21 N -0.58 -13.89 2.90 -164.77 -0.48 -14.37 16 22 C -0.25 -6.60 8.58 -15.06 -0.13 -6.73 16 23 H 0.07 1.74 6.25 -52.49 -0.33 1.41 16 24 C 0.01 0.18 4.94 -17.43 -0.09 0.10 16 25 N -0.90 -26.44 11.23 55.49 0.62 -25.81 16 26 Si 0.89 22.40 29.58 -169.99 -5.03 17.37 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.22 7.66 -51.93 -0.40 0.83 16 32 H 0.05 0.98 7.42 -51.93 -0.39 0.60 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.95 6.40 -51.93 -0.33 0.61 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.41 7.35 6.16 -40.82 -0.25 7.10 16 38 H 0.16 2.12 7.74 -52.49 -0.41 1.72 16 39 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.11 1.07 7.54 -51.93 -0.39 0.68 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 2.65 6.15 -51.93 -0.32 2.33 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -31.84 378.48 -10.66 -42.50 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.99 Total: 8.25 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -4.14 Total: 6.16 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -0.29 Total: -68.31 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.84 -10.66 -42.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071862765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.369 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds