Wall clock time and date at job start Tue Mar 31 2020 16:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53044 * 109.53884 * 298.63377 * 5 4 2 7 7 H 1.08998 * 109.49761 * 181.31591 * 6 5 4 8 8 N 1.46497 * 109.49704 * 301.41588 * 6 5 4 9 9 C 1.34771 * 119.99896 * 204.99787 * 8 6 5 10 10 O 1.21477 * 119.99991 * 359.97438 * 9 8 6 11 11 C 1.48455 * 120.00097 * 179.97438 * 9 8 6 12 12 C 1.39544 * 120.55261 * 180.02562 * 11 9 8 13 13 C 1.38758 * 118.26621 * 180.02562 * 12 11 9 14 14 N 1.32205 * 119.14435 * 0.02562 * 13 12 11 15 15 C 1.31880 * 121.03878 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.04108 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.49793 * 8.62636 * 16 15 14 18 18 C 1.52998 * 60.00153 * 252.50923 * 17 16 15 19 19 N 1.31581 * 121.91757 * 359.72258 * 15 14 13 20 20 C 1.53191 * 109.30755 * 61.36274 * 6 5 4 21 21 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 22 22 C 1.36945 * 120.63269 * 6.51524 * 21 2 1 23 23 H 1.07999 * 119.99653 * 330.19743 * 22 21 2 24 24 C 1.38810 * 120.00178 * 150.19385 * 22 21 2 25 25 N 1.31620 * 119.99942 * 344.48884 * 24 22 21 26 26 Si 1.86795 * 119.99872 * 164.48482 * 24 22 21 27 27 H 1.48497 * 109.47152 * 60.00445 * 26 24 22 28 28 H 1.48507 * 109.47028 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47373 * 300.00024 * 26 24 22 30 30 H 1.09000 * 109.47021 * 300.00230 * 1 2 3 31 31 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 32 32 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50293 * 294.51312 * 4 2 1 34 34 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 35 35 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 36 36 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 37 37 H 0.96997 * 120.00285 * 24.99505 * 8 6 5 38 38 H 1.07997 * 120.86540 * 359.97438 * 12 11 9 39 39 H 1.07997 * 120.42776 * 180.02562 * 13 12 11 40 40 H 1.08998 * 115.54727 * 154.33536 * 16 15 14 41 41 H 1.08999 * 117.50053 * 0.02562 * 17 16 15 42 42 H 1.09003 * 117.49872 * 145.01677 * 17 16 15 43 43 H 1.09000 * 117.49557 * 252.51447 * 18 17 16 44 44 H 1.08992 * 117.49916 * 107.48930 * 18 17 16 45 45 H 1.09006 * 109.58889 * 65.15964 * 20 6 5 46 46 H 1.09004 * 109.58178 * 185.43292 * 20 6 5 47 47 H 0.97005 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9604 -1.6610 -0.0597 7 1 5.0449 -1.7627 -0.0986 8 7 3.3465 -2.9888 0.0184 9 6 3.9059 -4.0290 -0.6308 10 8 4.9188 -3.8655 -1.2811 11 6 3.2841 -5.3748 -0.5511 12 6 3.8539 -6.4600 -1.2182 13 6 3.2330 -7.6963 -1.1118 14 7 2.1316 -7.8035 -0.3885 15 6 1.6193 -6.7572 0.2295 16 6 0.3617 -6.9304 1.0416 17 6 -0.1413 -8.3573 1.2692 18 6 -0.8880 -7.4266 0.3115 19 7 2.1770 -5.5673 0.1616 20 6 3.4685 -0.9437 -1.3209 21 7 2.0254 -0.6991 -1.1934 22 6 1.1585 -1.1154 -2.1684 23 1 0.1447 -1.3842 -1.9107 24 6 1.5827 -1.1917 -3.4879 25 7 2.6925 -0.5888 -3.8583 26 14 0.5784 -2.1500 -4.7379 27 1 -0.7832 -1.5650 -4.8321 28 1 1.2412 -2.0786 -6.0649 29 1 0.4792 -3.5686 -4.3104 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7639 -0.1654 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1528 1.1022 36 1 3.9380 -1.3391 2.0704 37 1 2.5375 -3.1194 0.5374 38 1 4.7540 -6.3405 -1.8028 39 1 3.6442 -8.5598 -1.6134 40 1 0.2209 -6.2120 1.8491 41 1 0.4376 -9.1708 0.8319 42 1 -0.6131 -8.5780 2.2268 43 1 -1.8510 -7.0349 0.6391 44 1 -0.8006 -7.6277 -0.7561 45 1 3.9921 0.0062 -1.4287 46 1 3.6599 -1.5675 -2.1940 47 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071862765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:07 Heat of formation + Delta-G solvation = 43.146017 kcal Electronic energy + Delta-G solvation = -29411.926975 eV Core-core repulsion = 25595.518907 eV Total energy + Delta-G solvation = -3816.408069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.40961 -40.89549 -39.22009 -37.92158 -35.91317 -35.03064 -34.49036 -32.91654 -32.11936 -31.74538 -28.03303 -27.13651 -26.35709 -26.07347 -23.95096 -23.36989 -23.19816 -22.09331 -21.56594 -20.42114 -19.36824 -18.78504 -18.18248 -17.28028 -16.85941 -16.74868 -16.54791 -16.36581 -15.86228 -15.83315 -15.47908 -15.29213 -15.08523 -14.89165 -14.66751 -14.45288 -14.05463 -13.69274 -13.24944 -13.02325 -12.90927 -12.65858 -12.60765 -12.44752 -12.40132 -12.17160 -12.12092 -12.08172 -11.96717 -11.87632 -11.59825 -11.54652 -11.36609 -11.23228 -11.08003 -10.55912 -10.44239 -10.37943 -10.04238 -8.58079 -7.84942 -5.29247 -0.64706 -0.17544 1.34929 1.37659 1.42783 1.63034 1.99864 2.46102 2.54589 2.59508 2.90197 3.16726 3.30209 3.52369 3.61537 3.66632 3.89717 3.92586 3.98764 4.08001 4.11713 4.14162 4.17126 4.46080 4.47938 4.56718 4.63447 4.72950 4.79759 4.80680 4.94168 4.96466 5.01363 5.05303 5.09671 5.11819 5.22154 5.24715 5.30469 5.33665 5.53964 5.56366 5.61184 5.69249 5.71004 5.75076 6.42431 6.47136 6.86888 7.11046 7.16907 7.91040 8.41635 9.20237 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009905 B = 0.004673 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.249945 B = 5991.034135 C = 6322.885209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.019 0.981 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.122 3.878 7 H 0.074 0.926 8 N -0.666 5.666 9 C 0.558 3.442 10 O -0.567 6.567 11 C 0.121 3.879 12 C -0.186 4.186 13 C 0.165 3.835 14 N -0.510 5.510 15 C 0.336 3.664 16 C -0.123 4.123 17 C -0.131 4.131 18 C -0.154 4.154 19 N -0.504 5.504 20 C 0.173 3.827 21 N -0.594 5.594 22 C -0.235 4.235 23 H 0.070 0.930 24 C -0.051 4.051 25 N -0.933 5.933 26 Si 0.946 3.054 27 H -0.269 1.269 28 H -0.298 1.298 29 H -0.293 1.293 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.412 0.588 38 H 0.166 0.834 39 H 0.222 0.778 40 H 0.138 0.862 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.080 0.920 45 H 0.005 0.995 46 H 0.046 0.954 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 -13.250 14.365 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.036 0.964 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.016 3.984 7 H 0.092 0.908 8 N -0.316 5.316 9 C 0.342 3.658 10 O -0.446 6.446 11 C -0.026 4.026 12 C -0.209 4.209 13 C -0.003 4.003 14 N -0.224 5.224 15 C 0.069 3.931 16 C -0.143 4.143 17 C -0.168 4.168 18 C -0.193 4.193 19 N -0.220 5.220 20 C 0.046 3.954 21 N -0.318 5.318 22 C -0.366 4.366 23 H 0.088 0.912 24 C -0.246 4.246 25 N -0.580 5.580 26 Si 0.776 3.224 27 H -0.195 1.195 28 H -0.224 1.224 29 H -0.220 1.220 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.250 0.750 38 H 0.184 0.816 39 H 0.238 0.762 40 H 0.156 0.844 41 H 0.122 0.878 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.099 0.901 45 H 0.023 0.977 46 H 0.064 0.936 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.192 -13.106 14.311 19.666 hybrid contribution 0.454 0.123 -1.963 2.018 sum -2.738 -12.983 12.348 18.125 Atomic orbital electron populations 1.21714 0.94821 1.01128 1.00856 1.20764 0.94102 0.93321 0.86847 0.96363 1.21968 0.94828 1.00841 0.98332 1.21674 0.97247 1.00099 0.95753 1.21704 0.96716 0.81763 0.98217 0.90814 1.45690 1.29139 1.07621 1.49129 1.18131 0.83777 0.84220 0.79680 1.90735 1.26319 1.84919 1.42603 1.21650 0.91941 0.94880 0.94103 1.23179 1.03405 0.93898 1.00449 1.24003 0.88384 0.97298 0.90588 1.68140 1.12236 1.33231 1.08831 1.22681 0.95098 0.83208 0.92112 1.20811 0.89305 1.02258 1.01928 1.23097 1.01189 0.90798 1.01748 1.23054 0.94835 1.02997 0.98365 1.68024 1.09043 1.26352 1.18609 1.20841 0.84260 0.95542 0.94794 1.44218 1.02182 1.65475 1.19915 1.19304 0.95332 1.35538 0.86416 0.91214 1.25667 0.98991 1.01184 0.98777 1.70135 1.25768 1.45802 1.16299 0.85657 0.79066 0.78789 0.78917 1.19492 1.22425 1.21990 0.90463 0.94608 0.93411 0.88932 0.92509 0.90140 0.89729 0.74989 0.81641 0.76166 0.84441 0.87803 0.85559 0.85952 0.90091 0.97738 0.93557 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.95 71.98 0.57 -3.87 16 2 C 0.15 5.94 3.49 44.98 0.16 6.09 16 3 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.12 -3.55 5.21 30.67 0.16 -3.39 16 5 C -0.11 -3.24 5.59 30.62 0.17 -3.07 16 6 C 0.12 4.72 2.81 45.07 0.13 4.84 16 7 H 0.07 2.92 7.58 -2.39 -0.02 2.90 16 8 N -0.67 -25.42 4.91 -444.47 -2.18 -27.60 16 9 C 0.56 22.74 7.80 86.97 0.68 23.42 16 10 O -0.57 -26.28 16.09 -3.64 -0.06 -26.34 16 11 C 0.12 4.25 6.79 42.00 0.29 4.53 16 12 C -0.19 -5.31 9.72 22.71 0.22 -5.09 16 13 C 0.16 3.67 11.31 84.76 0.96 4.62 16 14 N -0.51 -12.90 9.32 -187.89 -1.75 -14.66 16 15 C 0.34 9.42 7.31 138.79 1.01 10.43 16 16 C -0.12 -2.63 6.23 -11.54 -0.07 -2.71 16 17 C -0.13 -2.03 10.01 30.59 0.31 -1.73 16 18 C -0.15 -2.82 10.23 30.59 0.31 -2.51 16 19 N -0.50 -16.48 9.60 -177.07 -1.70 -18.18 16 20 C 0.17 8.56 4.88 86.36 0.42 8.98 16 21 N -0.59 -28.84 2.90 -675.22 -1.96 -30.80 16 22 C -0.24 -12.78 8.58 84.03 0.72 -12.06 16 23 H 0.07 3.69 6.25 -2.91 -0.02 3.67 16 24 C -0.05 -2.95 4.94 84.86 0.42 -2.54 16 25 N -0.93 -57.65 11.23 21.65 0.24 -57.41 16 26 Si 0.95 47.39 29.58 68.60 2.03 49.42 16 27 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 28 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 29 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.40 7.66 -2.39 -0.02 1.38 16 32 H 0.05 1.69 7.42 -2.39 -0.02 1.67 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 1.71 6.40 -2.39 -0.02 1.69 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.41 14.69 6.16 -92.71 -0.57 14.12 16 38 H 0.17 4.41 7.74 -2.91 -0.02 4.39 16 39 H 0.22 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.10 1.75 7.54 -2.39 -0.02 1.73 16 42 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 46 H 0.05 2.75 6.15 -2.38 -0.01 2.74 16 47 H 0.24 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -73.75 378.48 1.49 -72.26 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.42 Total: 27.33 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 6.45 Total: 25.97 kcal Atomic # 7 Polarization: -141.30 SS G_CDS: -7.35 Total: -148.65 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.06 Total: -26.34 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -73.75 1.49 -72.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071862765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.405 kcal (2) G-P(sol) polarization free energy of solvation -73.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds