Wall clock time and date at job start Tue Mar 31 2020 16:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58125 * 2 1 4 4 C 1.53184 * 109.58553 * 239.71610 * 2 1 3 5 5 C 1.53041 * 109.31538 * 185.57302 * 4 2 1 6 6 C 1.53050 * 109.53370 * 61.36260 * 5 4 2 7 7 H 1.08994 * 109.49512 * 178.64925 * 6 5 4 8 8 N 1.46501 * 109.49504 * 58.59076 * 6 5 4 9 9 C 1.34775 * 119.99905 * 155.00077 * 8 6 5 10 10 O 1.21481 * 120.00028 * 359.97438 * 9 8 6 11 11 C 1.48461 * 120.00189 * 179.97438 * 9 8 6 12 12 C 1.39532 * 120.55094 * 179.97438 * 11 9 8 13 13 C 1.38761 * 118.26345 * 179.97438 * 12 11 9 14 14 N 1.32210 * 119.14469 * 0.02562 * 13 12 11 15 15 C 1.31873 * 121.03826 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.04193 * 180.02562 * 15 14 13 17 17 C 1.53000 * 117.49444 * 299.99828 * 16 15 14 18 18 C 1.53001 * 60.03197 * 107.47920 * 17 16 15 19 19 N 1.31579 * 121.92094 * 0.27878 * 15 14 13 20 20 C 1.53184 * 109.31319 * 298.63784 * 6 5 4 21 21 N 1.46923 * 109.58649 * 120.42481 * 2 1 3 22 22 C 1.36933 * 120.63305 * 353.37517 * 21 2 1 23 23 H 1.07994 * 120.00065 * 29.01772 * 22 21 2 24 24 C 1.38815 * 119.99958 * 209.01896 * 22 21 2 25 25 N 1.31617 * 120.00138 * 15.03435 * 24 22 21 26 26 Si 1.86804 * 119.99973 * 195.02865 * 24 22 21 27 27 H 1.48499 * 109.47056 * 90.00137 * 26 24 22 28 28 H 1.48499 * 109.47040 * 209.99937 * 26 24 22 29 29 H 1.48500 * 109.46850 * 330.00052 * 26 24 22 30 30 H 1.08998 * 109.47109 * 180.29186 * 1 2 3 31 31 H 1.09004 * 109.47260 * 300.28264 * 1 2 3 32 32 H 1.08994 * 109.47195 * 60.28345 * 1 2 3 33 33 H 1.08998 * 109.50342 * 65.62293 * 4 2 1 34 34 H 1.08999 * 109.50249 * 305.52753 * 4 2 1 35 35 H 1.08998 * 109.45980 * 301.35060 * 5 4 2 36 36 H 1.08997 * 109.45084 * 181.37672 * 5 4 2 37 37 H 0.97001 * 120.00080 * 334.99858 * 8 6 5 38 38 H 1.07997 * 120.86814 * 359.97002 * 12 11 9 39 39 H 1.07999 * 120.42693 * 179.97438 * 13 12 11 40 40 H 1.09000 * 115.54968 * 154.33092 * 16 15 14 41 41 H 1.09000 * 117.49569 * 214.97559 * 17 16 15 42 42 H 1.08991 * 117.50156 * 359.97438 * 17 16 15 43 43 H 1.09001 * 117.49991 * 107.49361 * 18 17 16 44 44 H 1.08999 * 117.49984 * 252.52599 * 18 17 16 45 45 H 1.09000 * 109.58641 * 174.42104 * 20 6 5 46 46 H 1.08996 * 109.58899 * 294.84619 * 20 6 5 47 47 H 0.96995 * 120.00565 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8464 -1.1713 6 6 3.9569 -1.6657 0.0614 7 1 5.0411 -1.7701 0.1011 8 7 3.3406 -2.9923 -0.0185 9 6 3.8972 -4.0341 0.6306 10 8 4.9101 -3.8732 1.2816 11 6 3.2723 -5.3784 0.5501 12 6 3.8391 -6.4651 1.2171 13 6 3.2153 -7.6999 1.1099 14 7 2.1146 -7.8045 0.3850 15 6 1.6052 -6.7567 -0.2328 16 6 0.3483 -6.9269 -1.0467 17 6 0.3927 -7.9108 -2.2175 18 6 -0.3816 -8.2688 -0.9474 19 7 2.1650 -5.5680 -0.1634 20 6 3.4651 -0.9485 1.3225 21 7 2.0225 -0.7010 1.1936 22 6 1.1538 -1.1153 2.1676 23 1 0.1360 -1.3693 1.9109 24 6 1.5814 -1.2090 3.4849 25 7 2.7046 -0.6312 3.8549 26 14 0.5624 -2.1548 4.7326 27 1 0.9965 -3.5748 4.7517 28 1 0.7536 -1.5607 6.0801 29 1 -0.8726 -2.0807 4.3579 30 1 -0.3633 -1.0276 0.0052 31 1 -0.3634 0.5182 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 1.7660 -0.1642 -2.1370 34 1 1.6030 -1.7237 -1.2935 35 1 4.0060 0.1488 -1.0992 36 1 3.9375 -1.3423 -2.0686 37 1 2.5319 -3.1209 -0.5385 38 1 4.7397 -6.3481 1.8015 39 1 3.6242 -8.5646 1.6114 40 1 -0.2598 -6.0302 -1.1656 41 1 -0.1865 -7.6615 -3.1066 42 1 1.3311 -8.4346 -2.3994 43 1 -1.4702 -8.2550 -1.0009 44 1 0.0476 -9.0279 -0.2934 45 1 3.6519 -1.5743 2.1951 46 1 3.9903 0.0004 1.4316 47 1 3.0032 -0.6963 4.7754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071862766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:10 Heat of formation + Delta-G solvation = 43.541130 kcal Electronic energy + Delta-G solvation = -29377.229560 eV Core-core repulsion = 25560.838625 eV Total energy + Delta-G solvation = -3816.390935 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.40832 -40.89445 -39.22247 -37.91112 -35.91602 -35.02937 -34.49655 -32.91365 -32.12295 -31.73319 -28.03144 -27.14213 -26.35702 -26.06895 -23.94575 -23.37246 -23.18339 -22.09386 -21.56457 -20.41998 -19.36696 -18.78251 -18.18538 -17.29848 -16.81237 -16.70885 -16.60604 -16.41193 -15.91166 -15.64247 -15.54218 -15.32357 -15.08454 -14.89104 -14.65094 -14.46136 -14.05481 -13.69179 -13.23927 -13.05124 -12.89698 -12.67736 -12.59408 -12.43659 -12.39363 -12.14571 -12.09735 -12.06587 -11.97319 -11.87732 -11.59856 -11.54476 -11.35748 -11.23381 -11.07675 -10.56976 -10.44179 -10.37611 -10.04045 -8.59332 -7.84467 -5.28711 -0.64597 -0.17409 1.34648 1.37326 1.44332 1.63442 1.99240 2.46089 2.54993 2.61217 2.89165 3.16668 3.30566 3.52539 3.61518 3.66596 3.90056 3.92404 3.98989 4.07932 4.13326 4.14664 4.17323 4.46318 4.49026 4.56893 4.63456 4.72995 4.79693 4.81131 4.94475 4.97116 5.01302 5.05447 5.09632 5.12862 5.22867 5.24752 5.30623 5.33960 5.53920 5.56265 5.62265 5.69805 5.71353 5.75431 6.42366 6.47287 6.87077 7.11256 7.16855 7.91135 8.41151 9.20586 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.004595 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.826778 B = 6092.387063 C = 6495.317109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.019 0.981 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.122 3.878 7 H 0.073 0.927 8 N -0.666 5.666 9 C 0.558 3.442 10 O -0.567 6.567 11 C 0.121 3.879 12 C -0.187 4.187 13 C 0.165 3.835 14 N -0.510 5.510 15 C 0.337 3.663 16 C -0.128 4.128 17 C -0.138 4.138 18 C -0.142 4.142 19 N -0.504 5.504 20 C 0.171 3.829 21 N -0.595 5.595 22 C -0.233 4.233 23 H 0.072 0.928 24 C -0.053 4.053 25 N -0.934 5.934 26 Si 0.945 3.055 27 H -0.302 1.302 28 H -0.295 1.295 29 H -0.263 1.263 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.412 0.588 38 H 0.165 0.835 39 H 0.222 0.778 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.102 0.898 45 H 0.049 0.951 46 H 0.004 0.996 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 -13.291 -14.946 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.037 0.963 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.016 3.984 7 H 0.091 0.909 8 N -0.316 5.316 9 C 0.342 3.658 10 O -0.446 6.446 11 C -0.026 4.026 12 C -0.210 4.210 13 C -0.003 4.003 14 N -0.224 5.224 15 C 0.070 3.930 16 C -0.148 4.148 17 C -0.176 4.176 18 C -0.179 4.179 19 N -0.220 5.220 20 C 0.044 3.956 21 N -0.318 5.318 22 C -0.364 4.364 23 H 0.090 0.910 24 C -0.247 4.247 25 N -0.581 5.581 26 Si 0.775 3.225 27 H -0.230 1.230 28 H -0.222 1.222 29 H -0.188 1.188 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.250 0.750 38 H 0.183 0.817 39 H 0.238 0.762 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.121 0.879 45 H 0.067 0.933 46 H 0.022 0.978 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.994 -13.144 -14.892 20.088 hybrid contribution 0.469 0.121 1.987 2.045 sum -2.525 -13.023 -12.905 18.508 Atomic orbital electron populations 1.21721 0.94824 1.01129 1.00874 1.20767 0.94118 0.93331 0.86843 0.96307 1.21965 0.94821 1.00844 0.98329 1.21674 0.97270 1.00078 0.95752 1.21707 0.96668 0.81796 0.98235 0.90863 1.45691 1.29186 1.07620 1.49075 1.18138 0.83788 0.84220 0.79680 1.90736 1.26333 1.84952 1.42581 1.21647 0.91998 0.94854 0.94052 1.23173 1.03397 0.93894 1.00518 1.24001 0.88282 0.97306 0.90661 1.68144 1.12231 1.33261 1.08795 1.22668 0.95024 0.83243 0.92075 1.20803 0.93616 0.97694 1.02680 1.23060 1.02771 0.99223 0.92511 1.23111 0.99887 0.94784 1.00151 1.68032 1.09054 1.26607 1.18329 1.20875 0.84209 0.95602 0.94907 1.44244 1.02257 1.65366 1.19964 1.19376 0.94925 1.35529 0.86550 0.91035 1.25656 0.98903 1.01436 0.98751 1.70132 1.24955 1.46658 1.16366 0.85580 0.79556 0.77960 0.79384 1.23002 1.22213 1.18777 0.93418 0.94583 0.90460 0.88932 0.92506 0.90143 0.89759 0.74986 0.81702 0.76185 0.85085 0.85663 0.89111 0.86150 0.87928 0.93253 0.97766 0.94752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.94 71.98 0.57 -3.87 16 2 C 0.15 5.91 3.50 44.97 0.16 6.07 16 3 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.12 -3.54 5.20 30.67 0.16 -3.38 16 5 C -0.11 -3.24 5.59 30.62 0.17 -3.07 16 6 C 0.12 4.73 2.81 45.07 0.13 4.85 16 7 H 0.07 2.91 7.58 -2.39 -0.02 2.89 16 8 N -0.67 -25.47 4.91 -444.45 -2.18 -27.65 16 9 C 0.56 22.82 7.80 86.97 0.68 23.49 16 10 O -0.57 -26.42 16.09 -3.66 -0.06 -26.48 16 11 C 0.12 4.27 6.79 41.99 0.29 4.55 16 12 C -0.19 -5.35 9.72 22.71 0.22 -5.13 16 13 C 0.17 3.68 11.31 84.76 0.96 4.64 16 14 N -0.51 -12.90 9.32 -187.89 -1.75 -14.65 16 15 C 0.34 9.44 7.31 138.79 1.01 10.45 16 16 C -0.13 -2.74 6.24 -11.51 -0.07 -2.81 16 17 C -0.14 -2.11 10.23 30.59 0.31 -1.80 16 18 C -0.14 -2.28 10.01 30.62 0.31 -1.97 16 19 N -0.50 -16.49 9.60 -177.07 -1.70 -18.19 16 20 C 0.17 8.49 4.89 86.36 0.42 8.91 16 21 N -0.59 -28.83 2.91 -675.26 -1.96 -30.80 16 22 C -0.23 -12.64 8.61 84.03 0.72 -11.92 16 23 H 0.07 3.78 6.20 -2.91 -0.02 3.76 16 24 C -0.05 -3.04 4.96 84.86 0.42 -2.62 16 25 N -0.93 -57.73 11.14 21.65 0.24 -57.49 16 26 Si 0.94 47.40 29.58 68.60 2.03 49.42 16 27 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 28 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 29 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 30 H 0.05 1.69 7.40 -2.39 -0.02 1.67 16 31 H 0.03 1.40 7.66 -2.38 -0.02 1.38 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 1.71 6.40 -2.39 -0.02 1.69 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.41 14.71 6.16 -92.71 -0.57 14.14 16 38 H 0.17 4.43 7.74 -2.91 -0.02 4.41 16 39 H 0.22 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.10 1.81 7.54 -2.39 -0.02 1.79 16 45 H 0.05 2.94 6.06 -2.39 -0.01 2.93 16 46 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 47 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -73.76 378.28 1.49 -72.27 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.42 Total: 27.15 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 6.46 Total: 26.40 kcal Atomic # 7 Polarization: -141.41 SS G_CDS: -7.36 Total: -148.76 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.06 Total: -26.48 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -73.76 1.49 -72.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071862766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.813 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds