Wall clock time and date at job start Tue Mar 31 2020 16:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58227 * 2 1 4 4 C 1.53192 * 109.70503 * 239.64515 * 2 1 3 5 5 C 1.53103 * 109.32840 * 185.50794 * 4 2 1 6 6 C 1.53036 * 109.50330 * 61.34427 * 5 4 2 7 7 H 1.09005 * 109.49928 * 178.68045 * 6 5 4 8 8 N 1.46503 * 109.50041 * 58.61958 * 6 5 4 9 9 C 1.34769 * 120.00222 * 155.06581 * 8 6 5 10 10 O 1.21551 * 120.00241 * 359.97438 * 9 8 6 11 11 C 1.47832 * 120.00158 * 179.97438 * 9 8 6 12 12 C 1.39951 * 120.94090 * 179.97438 * 11 9 8 13 13 N 1.32141 * 118.92368 * 179.97438 * 12 11 9 14 14 C 1.31876 * 120.96746 * 0.02562 * 13 12 11 15 15 C 1.50699 * 118.95205 * 180.02562 * 14 13 12 16 16 C 1.52999 * 117.50067 * 188.74487 * 15 14 13 17 17 C 1.53005 * 117.50040 * 120.08430 * 15 14 13 18 18 N 1.31864 * 122.09662 * 0.27553 * 14 13 12 19 19 C 1.32150 * 120.96361 * 359.43830 * 18 14 13 20 20 C 1.53189 * 109.33784 * 298.64702 * 6 5 4 21 21 N 1.46921 * 109.58381 * 120.28235 * 2 1 3 22 22 C 1.36942 * 120.63380 * 353.51836 * 21 2 1 23 23 H 1.07999 * 119.99680 * 29.04048 * 22 21 2 24 24 C 1.38814 * 119.99985 * 209.04091 * 22 21 2 25 25 N 1.31622 * 119.99873 * 15.00841 * 24 22 21 26 26 Si 1.86794 * 119.99739 * 195.01133 * 24 22 21 27 27 H 1.48502 * 109.47588 * 59.99847 * 26 24 22 28 28 H 1.48499 * 109.46899 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47086 * 299.99736 * 26 24 22 30 30 H 1.09001 * 109.47607 * 299.71729 * 1 2 3 31 31 H 1.09004 * 109.47008 * 59.71405 * 1 2 3 32 32 H 1.08998 * 109.47369 * 179.71158 * 1 2 3 33 33 H 1.08995 * 109.49328 * 305.45935 * 4 2 1 34 34 H 1.09000 * 109.49477 * 65.52157 * 4 2 1 35 35 H 1.08999 * 109.45243 * 301.34464 * 5 4 2 36 36 H 1.09006 * 109.50054 * 181.36722 * 5 4 2 37 37 H 0.97006 * 119.99437 * 335.05964 * 8 6 5 38 38 H 1.07994 * 120.53825 * 359.95681 * 12 11 9 39 39 H 1.09010 * 115.55168 * 334.41785 * 15 14 13 40 40 H 1.09005 * 117.49686 * 0.02562 * 16 15 14 41 41 H 1.09005 * 117.49982 * 145.01725 * 16 15 14 42 42 H 1.08998 * 117.49615 * 214.97853 * 17 15 14 43 43 H 1.08999 * 117.49376 * 359.97438 * 17 15 14 44 44 H 1.08008 * 120.53480 * 180.25698 * 19 18 14 45 45 H 1.09003 * 109.58270 * 174.43913 * 20 6 5 46 46 H 1.08994 * 109.58883 * 294.86300 * 20 6 5 47 47 H 0.97003 * 119.99620 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5712 -0.8445 -1.1677 6 6 3.9601 -1.6607 0.0671 7 1 5.0446 -1.7629 0.1089 8 7 3.3466 -2.9888 -0.0114 9 6 3.9033 -4.0279 0.6416 10 8 4.9148 -3.8635 1.2954 11 6 3.2839 -5.3679 0.5629 12 6 3.8456 -6.4608 1.2327 13 7 3.2586 -7.6406 1.1353 14 6 2.1612 -7.7956 0.4206 15 6 1.5290 -9.1613 0.3413 16 6 0.3827 -9.3525 -0.6539 17 6 0.0927 -9.3055 0.8484 18 7 1.6021 -6.7946 -0.2308 19 6 2.1194 -5.5795 -0.1839 20 6 3.4653 -0.9424 1.3264 21 7 2.0224 -0.6980 1.1953 22 6 1.1533 -1.1125 2.1690 23 1 0.1364 -1.3693 1.9114 24 6 1.5793 -1.2027 3.4871 25 7 2.7010 -0.6221 3.8573 26 14 0.5606 -2.1481 4.7352 27 1 0.4342 -3.5627 4.3015 28 1 1.2273 -2.0940 6.0610 29 1 -0.7898 -1.5385 4.8355 30 1 -0.3634 0.5094 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0052 33 1 1.6080 -1.7256 -1.2905 34 1 1.7683 -0.1675 -2.1365 35 1 4.0078 0.1517 -1.0968 36 1 3.9441 -1.3413 -2.0635 37 1 2.5395 -3.1200 -0.5334 38 1 4.7445 -6.3419 1.8193 39 1 2.2049 -10.0021 0.4980 40 1 0.0860 -8.4905 -1.2515 41 1 0.3042 -10.3191 -1.1516 42 1 -0.1764 -10.2412 1.3384 43 1 -0.3948 -8.4127 1.2399 44 1 1.6534 -4.7638 -0.7168 45 1 3.6523 -1.5665 2.2003 46 1 3.9885 0.0076 1.4346 47 1 2.9989 -0.6854 4.7783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071879413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:22 Heat of formation + Delta-G solvation = 61.698207 kcal Electronic energy + Delta-G solvation = -29161.387834 eV Core-core repulsion = 25345.784248 eV Total energy + Delta-G solvation = -3815.603585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.29996 -39.44698 -37.70066 -37.04434 -34.38552 -33.76310 -32.79667 -32.16248 -30.45299 -29.89225 -26.52101 -25.69229 -24.94063 -24.58706 -22.54641 -22.25016 -22.02983 -20.86965 -20.40824 -18.88161 -17.97719 -17.71958 -16.78528 -16.32786 -15.49655 -15.38980 -15.03057 -14.91087 -14.45765 -14.17090 -14.13672 -13.89027 -13.71585 -13.47744 -13.21474 -12.86465 -12.54535 -12.40381 -11.98914 -11.75658 -11.53424 -11.28807 -11.20703 -11.06754 -10.98698 -10.94115 -10.91434 -10.73717 -10.69046 -10.43554 -10.38630 -10.00136 -9.67759 -9.52622 -9.47494 -9.37738 -9.32294 -8.48896 -8.47762 -6.64239 -5.78121 -3.22403 0.43343 0.99716 2.99583 3.35472 3.42127 3.43505 3.43797 3.56099 3.62704 3.93248 4.06897 4.45641 4.47073 4.64922 4.76740 4.80105 4.87338 5.05859 5.19296 5.26429 5.31255 5.39063 5.45085 5.45253 5.54568 5.60139 5.70371 5.90044 5.95031 6.00842 6.04825 6.09836 6.21832 6.27594 6.30350 6.38737 6.45359 6.54396 6.61127 6.80207 6.83248 7.00468 7.06470 7.31789 7.64727 7.79804 7.89736 7.96862 8.45684 8.57937 9.20366 9.84675 10.40300 11.29716 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.004247 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.475154 B = 6591.014381 C = 7300.297770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.079 0.921 8 N -0.691 5.691 9 C 0.567 3.433 10 O -0.536 6.536 11 C -0.233 4.233 12 C 0.208 3.792 13 N -0.519 5.519 14 C 0.358 3.642 15 C -0.105 4.105 16 C -0.152 4.152 17 C -0.155 4.155 18 N -0.519 5.519 19 C 0.188 3.812 20 C 0.161 3.839 21 N -0.583 5.583 22 C -0.252 4.252 23 H 0.067 0.933 24 C 0.008 3.992 25 N -0.898 5.898 26 Si 0.895 3.105 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.283 1.283 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.393 0.607 38 H 0.182 0.818 39 H 0.130 0.870 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.171 0.829 45 H 0.098 0.902 46 H 0.027 0.973 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -11.021 -12.034 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.097 0.903 8 N -0.341 5.341 9 C 0.351 3.649 10 O -0.414 6.414 11 C -0.241 4.241 12 C 0.041 3.959 13 N -0.231 5.231 14 C 0.093 3.907 15 C -0.125 4.125 16 C -0.190 4.190 17 C -0.193 4.193 18 N -0.233 5.233 19 C 0.021 3.979 20 C 0.035 3.965 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.085 0.915 24 C -0.191 4.191 25 N -0.542 5.542 26 Si 0.725 3.275 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.209 1.209 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.229 0.771 38 H 0.199 0.801 39 H 0.148 0.852 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.188 0.812 45 H 0.116 0.884 46 H 0.045 0.955 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.520 -11.741 -11.439 16.462 hybrid contribution -0.454 0.481 0.684 0.951 sum -1.974 -11.260 -10.755 15.696 Atomic orbital electron populations 1.21796 0.96088 1.01186 1.00263 1.20463 0.92898 0.93689 0.87129 0.95713 1.22079 0.95103 1.00577 0.99230 1.21712 0.97027 1.00281 0.96699 1.21863 0.97097 0.81252 0.98509 0.90337 1.45749 1.29220 1.08679 1.50409 1.17587 0.84156 0.83215 0.79942 1.90773 1.25068 1.84648 1.40880 1.21935 1.00164 0.97622 1.04364 1.23483 0.96646 0.85614 0.90149 1.68241 1.10615 1.25492 1.18795 1.22320 0.87538 0.94005 0.86881 1.20666 0.91716 0.91762 1.08367 1.23045 0.99572 1.03882 0.92510 1.23018 0.94935 1.03828 0.97499 1.68098 1.33211 1.00089 1.21900 1.23418 0.89518 0.94100 0.90887 1.21205 0.83754 0.97183 0.94407 1.44052 1.02644 1.64876 1.19058 1.19027 0.94704 1.38280 0.86174 0.91490 1.25035 0.97642 0.99513 0.96933 1.69963 1.23173 1.44081 1.16962 0.86496 0.79733 0.80129 0.81135 1.21380 1.21573 1.20903 0.92006 0.94392 0.93008 0.92880 0.92713 0.90898 0.92929 0.77125 0.80081 0.85213 0.87063 0.88152 0.87831 0.88358 0.81189 0.88391 0.95505 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.95 37.16 0.30 -2.07 16 2 C 0.16 3.10 3.49 -67.60 -0.24 2.86 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.94 5.21 -26.58 -0.14 -2.08 16 5 C -0.12 -1.75 5.59 -26.66 -0.15 -1.90 16 6 C 0.12 2.13 2.81 -67.81 -0.19 1.94 16 7 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16 8 N -0.69 -11.63 4.87 -54.64 -0.27 -11.90 16 9 C 0.57 10.32 7.75 -12.34 -0.10 10.22 16 10 O -0.54 -11.47 16.11 5.32 0.09 -11.38 16 11 C -0.23 -3.70 5.91 -104.69 -0.62 -4.32 16 12 C 0.21 3.22 10.88 -16.78 -0.18 3.04 16 13 N -0.52 -7.85 10.31 -10.40 -0.11 -7.96 16 14 C 0.36 5.05 7.31 -157.07 -1.15 3.90 16 15 C -0.11 -1.14 6.23 -91.77 -0.57 -1.71 16 16 C -0.15 -1.35 10.01 -26.69 -0.27 -1.61 16 17 C -0.15 -1.45 10.24 -26.69 -0.27 -1.73 16 18 N -0.52 -7.33 9.32 -10.39 -0.10 -7.43 16 19 C 0.19 2.64 10.81 -16.77 -0.18 2.46 16 20 C 0.16 3.69 4.89 -3.71 -0.02 3.67 16 21 N -0.58 -13.34 2.91 -164.78 -0.48 -13.82 16 22 C -0.25 -6.48 8.60 -15.06 -0.13 -6.61 16 23 H 0.07 1.69 6.21 -52.49 -0.33 1.36 16 24 C 0.01 0.22 4.96 -17.43 -0.09 0.13 16 25 N -0.90 -25.94 11.14 55.49 0.62 -25.32 16 26 Si 0.89 21.98 29.58 -169.99 -5.03 16.95 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 30 H 0.06 1.20 7.62 -51.93 -0.40 0.80 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.90 7.44 -51.93 -0.39 0.51 16 33 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.39 5.79 4.91 -40.82 -0.20 5.58 16 38 H 0.18 2.61 7.74 -52.49 -0.41 2.21 16 39 H 0.13 1.23 8.14 -51.92 -0.42 0.81 16 40 H 0.11 1.09 7.53 -51.93 -0.39 0.70 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.17 1.96 6.54 -52.48 -0.34 1.62 16 45 H 0.10 2.67 6.06 -51.93 -0.31 2.36 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -31.33 375.96 -10.45 -41.78 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.85 Total: 7.21 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -3.99 Total: 6.20 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -0.33 Total: -66.42 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.33 -10.45 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071879413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.480 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds