Wall clock time and date at job start Tue Mar 31 2020 16:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58227 * 2 1 4 4 C 1.53192 * 109.70503 * 239.64515 * 2 1 3 5 5 C 1.53103 * 109.32840 * 185.50794 * 4 2 1 6 6 C 1.53036 * 109.50330 * 61.34427 * 5 4 2 7 7 H 1.09005 * 109.49928 * 178.68045 * 6 5 4 8 8 N 1.46503 * 109.50041 * 58.61958 * 6 5 4 9 9 C 1.34769 * 120.00222 * 155.06581 * 8 6 5 10 10 O 1.21551 * 120.00241 * 359.97438 * 9 8 6 11 11 C 1.47832 * 120.00158 * 179.97438 * 9 8 6 12 12 C 1.39951 * 120.94090 * 179.97438 * 11 9 8 13 13 N 1.32141 * 118.92368 * 179.97438 * 12 11 9 14 14 C 1.31876 * 120.96746 * 0.02562 * 13 12 11 15 15 C 1.50699 * 118.95205 * 180.02562 * 14 13 12 16 16 C 1.52999 * 117.50067 * 188.74487 * 15 14 13 17 17 C 1.53005 * 117.50040 * 120.08430 * 15 14 13 18 18 N 1.31864 * 122.09662 * 0.27553 * 14 13 12 19 19 C 1.32150 * 120.96361 * 359.43830 * 18 14 13 20 20 C 1.53189 * 109.33784 * 298.64702 * 6 5 4 21 21 N 1.46921 * 109.58381 * 120.28235 * 2 1 3 22 22 C 1.36942 * 120.63380 * 353.51836 * 21 2 1 23 23 H 1.07999 * 119.99680 * 29.04048 * 22 21 2 24 24 C 1.38814 * 119.99985 * 209.04091 * 22 21 2 25 25 N 1.31622 * 119.99873 * 15.00841 * 24 22 21 26 26 Si 1.86794 * 119.99739 * 195.01133 * 24 22 21 27 27 H 1.48502 * 109.47588 * 59.99847 * 26 24 22 28 28 H 1.48499 * 109.46899 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47086 * 299.99736 * 26 24 22 30 30 H 1.09001 * 109.47607 * 299.71729 * 1 2 3 31 31 H 1.09004 * 109.47008 * 59.71405 * 1 2 3 32 32 H 1.08998 * 109.47369 * 179.71158 * 1 2 3 33 33 H 1.08995 * 109.49328 * 305.45935 * 4 2 1 34 34 H 1.09000 * 109.49477 * 65.52157 * 4 2 1 35 35 H 1.08999 * 109.45243 * 301.34464 * 5 4 2 36 36 H 1.09006 * 109.50054 * 181.36722 * 5 4 2 37 37 H 0.97006 * 119.99437 * 335.05964 * 8 6 5 38 38 H 1.07994 * 120.53825 * 359.95681 * 12 11 9 39 39 H 1.09010 * 115.55168 * 334.41785 * 15 14 13 40 40 H 1.09005 * 117.49686 * 0.02562 * 16 15 14 41 41 H 1.09005 * 117.49982 * 145.01725 * 16 15 14 42 42 H 1.08998 * 117.49615 * 214.97853 * 17 15 14 43 43 H 1.08999 * 117.49376 * 359.97438 * 17 15 14 44 44 H 1.08008 * 120.53480 * 180.25698 * 19 18 14 45 45 H 1.09003 * 109.58270 * 174.43913 * 20 6 5 46 46 H 1.08994 * 109.58883 * 294.86300 * 20 6 5 47 47 H 0.97003 * 119.99620 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5712 -0.8445 -1.1677 6 6 3.9601 -1.6607 0.0671 7 1 5.0446 -1.7629 0.1089 8 7 3.3466 -2.9888 -0.0114 9 6 3.9033 -4.0279 0.6416 10 8 4.9148 -3.8635 1.2954 11 6 3.2839 -5.3679 0.5629 12 6 3.8456 -6.4608 1.2327 13 7 3.2586 -7.6406 1.1353 14 6 2.1612 -7.7956 0.4206 15 6 1.5290 -9.1613 0.3413 16 6 0.3827 -9.3525 -0.6539 17 6 0.0927 -9.3055 0.8484 18 7 1.6021 -6.7946 -0.2308 19 6 2.1194 -5.5795 -0.1839 20 6 3.4653 -0.9424 1.3264 21 7 2.0224 -0.6980 1.1953 22 6 1.1533 -1.1125 2.1690 23 1 0.1364 -1.3693 1.9114 24 6 1.5793 -1.2027 3.4871 25 7 2.7010 -0.6221 3.8573 26 14 0.5606 -2.1481 4.7352 27 1 0.4342 -3.5627 4.3015 28 1 1.2273 -2.0940 6.0610 29 1 -0.7898 -1.5385 4.8355 30 1 -0.3634 0.5094 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0052 33 1 1.6080 -1.7256 -1.2905 34 1 1.7683 -0.1675 -2.1365 35 1 4.0078 0.1517 -1.0968 36 1 3.9441 -1.3413 -2.0635 37 1 2.5395 -3.1200 -0.5334 38 1 4.7445 -6.3419 1.8193 39 1 2.2049 -10.0021 0.4980 40 1 0.0860 -8.4905 -1.2515 41 1 0.3042 -10.3191 -1.1516 42 1 -0.1764 -10.2412 1.3384 43 1 -0.3948 -8.4127 1.2399 44 1 1.6534 -4.7638 -0.7168 45 1 3.6523 -1.5665 2.2003 46 1 3.9885 0.0076 1.4346 47 1 2.9989 -0.6854 4.7783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071879413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:21 Heat of formation + Delta-G solvation = 42.491843 kcal Electronic energy + Delta-G solvation = -29162.220684 eV Core-core repulsion = 25345.784248 eV Total energy + Delta-G solvation = -3816.436436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.45200 -40.87719 -39.17159 -37.93718 -35.92622 -35.01173 -34.49229 -33.41893 -31.87146 -31.62871 -27.97260 -27.15578 -26.46114 -25.73601 -23.90574 -23.24758 -23.15450 -22.17778 -21.80349 -20.44609 -19.27559 -18.87532 -18.13515 -17.84674 -17.10008 -16.70693 -16.34139 -16.07558 -15.89635 -15.73817 -15.43292 -15.22030 -15.08372 -14.80255 -14.59416 -14.41803 -14.02044 -13.67512 -13.34715 -13.00220 -12.88248 -12.73416 -12.60445 -12.58269 -12.41460 -12.36090 -12.15164 -12.09233 -12.07216 -11.91690 -11.56803 -11.42805 -11.23513 -11.06261 -11.00611 -10.53217 -10.51028 -10.45093 -9.99331 -8.57395 -7.83048 -5.27336 -0.73800 -0.15377 1.37154 1.39796 1.44602 1.70905 2.11700 2.47479 2.51333 2.61439 2.83119 3.11737 3.31552 3.32884 3.59566 3.64025 3.80597 3.85296 3.92342 4.05262 4.07822 4.11329 4.20191 4.30419 4.50221 4.61277 4.66476 4.75238 4.78874 4.82788 4.91199 4.97958 5.05135 5.07763 5.09113 5.14422 5.17265 5.28521 5.32045 5.33871 5.58279 5.60970 5.65791 5.68064 5.73372 5.76514 6.43969 6.52464 6.81985 7.18739 7.19185 7.93555 8.43278 9.21780 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.004247 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.475154 B = 6591.014381 C = 7300.297770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.013 0.987 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.070 0.930 8 N -0.680 5.680 9 C 0.565 3.435 10 O -0.577 6.577 11 C -0.251 4.251 12 C 0.202 3.798 13 N -0.531 5.531 14 C 0.354 3.646 15 C -0.126 4.126 16 C -0.135 4.135 17 C -0.150 4.150 18 N -0.521 5.521 19 C 0.198 3.802 20 C 0.170 3.830 21 N -0.595 5.595 22 C -0.234 4.234 23 H 0.077 0.923 24 C -0.051 4.051 25 N -0.934 5.934 26 Si 0.944 3.056 27 H -0.290 1.290 28 H -0.303 1.303 29 H -0.270 1.270 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.406 0.594 38 H 0.181 0.819 39 H 0.143 0.857 40 H 0.101 0.899 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.198 0.802 45 H 0.049 0.951 46 H -0.001 1.001 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 -12.471 -15.336 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.031 0.969 4 C -0.159 4.159 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.088 0.912 8 N -0.331 5.331 9 C 0.351 3.649 10 O -0.458 6.458 11 C -0.259 4.259 12 C 0.035 3.965 13 N -0.244 5.244 14 C 0.089 3.911 15 C -0.146 4.146 16 C -0.172 4.172 17 C -0.189 4.189 18 N -0.235 5.235 19 C 0.030 3.970 20 C 0.043 3.957 21 N -0.319 5.319 22 C -0.365 4.365 23 H 0.094 0.906 24 C -0.246 4.246 25 N -0.581 5.581 26 Si 0.774 3.226 27 H -0.217 1.217 28 H -0.230 1.230 29 H -0.196 1.196 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.244 0.756 38 H 0.198 0.802 39 H 0.161 0.839 40 H 0.120 0.880 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.099 0.901 44 H 0.214 0.786 45 H 0.067 0.933 46 H 0.016 0.984 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.756 -13.196 -14.798 20.180 hybrid contribution 0.178 0.935 1.661 1.915 sum -3.578 -12.261 -13.137 18.323 Atomic orbital electron populations 1.21732 0.94766 1.01417 1.00759 1.20777 0.94097 0.93264 0.87017 0.96880 1.21978 0.94678 1.01145 0.98081 1.21692 0.97304 1.00000 0.95874 1.21574 0.96590 0.81769 0.97839 0.91158 1.45616 1.29514 1.07859 1.50063 1.17955 0.83642 0.84245 0.79069 1.90749 1.27025 1.85428 1.42644 1.21739 1.01470 0.96330 1.06344 1.23577 0.96814 0.86004 0.90062 1.68325 1.11413 1.25106 1.19580 1.23066 0.86977 0.95399 0.85664 1.20897 0.92627 0.90333 1.10730 1.23139 0.97114 1.04926 0.92034 1.23097 0.93183 1.04214 0.98358 1.68241 1.33048 1.00069 1.22104 1.23814 0.88447 0.94876 0.89842 1.20880 0.84123 0.95460 0.95234 1.44273 1.02181 1.65554 1.19853 1.19363 0.95110 1.35566 0.86429 0.90595 1.25648 0.98769 1.01385 0.98809 1.70134 1.25087 1.46622 1.16294 0.85687 0.78998 0.78945 0.78947 1.21656 1.22993 1.19603 0.94829 0.90613 0.92845 0.91685 0.89023 0.90707 0.89345 0.75575 0.80163 0.83946 0.88007 0.85328 0.85426 0.90106 0.78553 0.93261 0.98355 0.94869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 7.95 71.98 0.57 -3.56 16 2 C 0.15 5.45 3.49 44.98 0.16 5.61 16 3 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 4 C -0.12 -3.05 5.21 30.69 0.16 -2.89 16 5 C -0.11 -2.91 5.59 30.64 0.17 -2.74 16 6 C 0.13 4.56 2.81 45.07 0.13 4.69 16 7 H 0.07 2.63 7.58 -2.38 -0.02 2.62 16 8 N -0.68 -22.21 4.87 -445.06 -2.17 -24.38 16 9 C 0.57 20.80 7.75 86.78 0.67 21.48 16 10 O -0.58 -25.86 16.11 -3.88 -0.06 -25.92 16 11 C -0.25 -7.91 5.91 -19.91 -0.12 -8.03 16 12 C 0.20 6.36 10.88 85.06 0.93 7.28 16 13 N -0.53 -15.90 10.31 -186.80 -1.93 -17.82 16 14 C 0.35 9.51 7.31 138.70 1.01 10.53 16 15 C -0.13 -2.45 6.23 -11.54 -0.07 -2.52 16 16 C -0.13 -1.96 10.01 30.62 0.31 -1.66 16 17 C -0.15 -2.45 10.24 30.62 0.31 -2.14 16 18 N -0.52 -13.78 9.32 -186.79 -1.74 -15.52 16 19 C 0.20 5.20 10.81 85.06 0.92 6.12 16 20 C 0.17 8.06 4.89 86.36 0.42 8.48 16 21 N -0.59 -27.23 2.91 -675.24 -1.96 -29.20 16 22 C -0.23 -12.08 8.60 84.03 0.72 -11.36 16 23 H 0.08 3.75 6.21 -2.91 -0.02 3.73 16 24 C -0.05 -2.87 4.96 84.86 0.42 -2.45 16 25 N -0.93 -56.81 11.14 21.65 0.24 -56.57 16 26 Si 0.94 46.34 29.58 68.60 2.03 48.37 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 29 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 30 H 0.03 1.24 7.62 -2.39 -0.02 1.22 16 31 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.05 1.68 7.44 -2.39 -0.02 1.66 16 33 H 0.06 1.53 6.40 -2.39 -0.02 1.52 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.41 10.86 4.91 -92.70 -0.46 10.41 16 38 H 0.18 5.50 7.74 -2.91 -0.02 5.48 16 39 H 0.14 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.10 1.72 7.53 -2.38 -0.02 1.70 16 41 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.20 3.92 6.54 -2.91 -0.02 3.90 16 45 H 0.05 2.84 6.06 -2.39 -0.01 2.82 16 46 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 47 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -72.55 375.96 1.66 -70.89 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.54 Total: 23.30 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: 6.71 Total: 26.85 kcal Atomic # 7 Polarization: -135.93 SS G_CDS: -7.56 Total: -143.49 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.06 Total: -25.92 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -72.55 1.66 -70.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071879413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.383 kcal (2) G-P(sol) polarization free energy of solvation -72.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds