Wall clock time and date at job start Tue Mar 31 2020 16:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58611 * 2 1 4 4 C 1.53197 * 109.58437 * 239.57726 * 2 1 3 5 5 C 1.53040 * 109.31275 * 185.57481 * 4 2 1 6 6 C 1.53040 * 109.53390 * 61.36498 * 5 4 2 7 7 H 1.09001 * 109.52534 * 58.60748 * 6 5 4 8 8 N 1.46500 * 109.49328 * 178.68191 * 6 5 4 9 9 C 1.34781 * 119.99931 * 204.83389 * 8 6 5 10 10 O 1.21553 * 119.99931 * 0.02562 * 9 8 6 11 11 C 1.47837 * 119.99957 * 180.02562 * 9 8 6 12 12 C 1.39967 * 120.93802 * 354.32292 * 11 9 8 13 13 N 1.32130 * 118.92378 * 179.97438 * 12 11 9 14 14 C 1.31888 * 120.96371 * 359.97438 * 13 12 11 15 15 N 1.31851 * 122.09717 * 0.02562 * 14 13 12 16 16 C 1.32166 * 120.96869 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.53594 * 179.97438 * 16 15 14 18 18 C 1.52995 * 117.50095 * 359.44656 * 17 16 15 19 19 C 1.52999 * 117.49959 * 290.82045 * 17 16 15 20 20 C 1.53195 * 109.31544 * 298.63257 * 6 5 4 21 21 N 1.46921 * 109.58827 * 120.28853 * 2 1 3 22 22 C 1.36932 * 120.63053 * 353.37062 * 21 2 1 23 23 H 1.07995 * 120.00477 * 29.83296 * 22 21 2 24 24 C 1.38815 * 120.00130 * 209.82923 * 22 21 2 25 25 N 1.31625 * 119.99946 * 15.79382 * 24 22 21 26 26 Si 1.86795 * 120.00088 * 195.79227 * 24 22 21 27 27 H 1.48499 * 109.47262 * 94.96774 * 26 24 22 28 28 H 1.48508 * 109.46869 * 214.96039 * 26 24 22 29 29 H 1.48497 * 109.47274 * 334.96362 * 26 24 22 30 30 H 1.09002 * 109.46817 * 299.71289 * 1 2 3 31 31 H 1.09002 * 109.47863 * 59.71279 * 1 2 3 32 32 H 1.09003 * 109.47446 * 179.71635 * 1 2 3 33 33 H 1.09006 * 109.49607 * 305.52761 * 4 2 1 34 34 H 1.09000 * 109.49906 * 65.62065 * 4 2 1 35 35 H 1.08991 * 109.45764 * 301.34424 * 5 4 2 36 36 H 1.09001 * 109.45600 * 181.38271 * 5 4 2 37 37 H 0.96998 * 120.00155 * 24.84381 * 8 6 5 38 38 H 1.08002 * 120.54031 * 359.95781 * 12 11 9 39 39 H 1.08004 * 118.94960 * 179.97438 * 14 13 12 40 40 H 1.09006 * 115.54780 * 145.15570 * 17 16 15 41 41 H 1.08997 * 117.50060 * 359.97438 * 18 17 16 42 42 H 1.08996 * 117.49896 * 145.02339 * 18 17 16 43 43 H 1.08997 * 117.49966 * 214.98366 * 19 17 16 44 44 H 1.08998 * 117.50166 * 359.97438 * 19 17 16 45 45 H 1.09002 * 109.58415 * 174.42444 * 20 6 5 46 46 H 1.09000 * 109.58496 * 294.84969 * 20 6 5 47 47 H 0.96993 * 119.99855 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2446 5 6 3.5674 -0.8493 -1.1693 6 6 3.9568 -1.6656 0.0653 7 1 3.4987 -2.6531 0.0085 8 7 5.4142 -1.8052 0.1194 9 6 5.9677 -2.8454 0.7736 10 8 5.2577 -3.6680 1.3184 11 6 7.4383 -2.9859 0.8287 12 6 8.2714 -2.1193 0.1117 13 7 9.5804 -2.2807 0.1900 14 6 10.1029 -3.2396 0.9297 15 7 9.3553 -4.0774 1.6207 16 6 8.0368 -3.9884 1.6000 17 6 7.1918 -4.9516 2.3932 18 6 7.9181 -6.0290 3.2008 19 6 7.1573 -6.4090 1.9289 20 6 3.4650 -0.9453 1.3248 21 7 2.0225 -0.6981 1.1952 22 6 1.1538 -1.1101 2.1702 23 1 0.1397 -1.3772 1.9123 24 6 1.5766 -1.1844 3.4903 25 7 2.6846 -0.5787 3.8616 26 14 0.5730 -2.1440 4.7398 27 1 1.1164 -3.5209 4.8589 28 1 0.6472 -1.4669 6.0594 29 1 -0.8423 -2.2072 4.2947 30 1 -0.3633 0.5094 0.8926 31 1 -0.3635 0.5183 -0.8874 32 1 -0.3634 -1.0277 -0.0051 33 1 1.6029 -1.7269 -1.2893 34 1 1.7659 -0.1694 -2.1367 35 1 4.0060 0.1460 -1.0997 36 1 3.9376 -1.3473 -2.0655 37 1 5.9807 -1.1488 -0.3155 38 1 7.8510 -1.3317 -0.4961 39 1 11.1773 -3.3422 0.9699 40 1 6.2768 -4.5362 2.8159 41 1 9.0071 -6.0415 3.1582 42 1 7.4812 -6.3227 4.1552 43 1 6.2199 -6.9526 2.0465 44 1 7.7455 -6.6711 1.0495 45 1 3.6519 -1.5692 2.1989 46 1 3.9904 0.0037 1.4315 47 1 2.9798 -0.6304 4.7841 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072037552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:33 Heat of formation + Delta-G solvation = 62.348264 kcal Electronic energy + Delta-G solvation = -28981.288861 eV Core-core repulsion = 25165.713464 eV Total energy + Delta-G solvation = -3815.575397 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43924 -39.33482 -37.69846 -37.16145 -34.54413 -33.55563 -32.86515 -32.38431 -30.52151 -29.85386 -26.39465 -25.40674 -25.35891 -24.58919 -22.37206 -22.26975 -21.36628 -21.12693 -20.23319 -19.35296 -17.91597 -17.58168 -16.97889 -16.40639 -15.62007 -15.47050 -15.12157 -15.01003 -14.33117 -14.13491 -14.12418 -13.85155 -13.81789 -13.49270 -13.38534 -12.79697 -12.43752 -12.08927 -11.89343 -11.71703 -11.56367 -11.50349 -11.37456 -11.14923 -10.91647 -10.74760 -10.59800 -10.53945 -10.42830 -10.33179 -10.27459 -9.98101 -9.73892 -9.55182 -9.47223 -9.44677 -9.32010 -8.62798 -8.44124 -6.63329 -5.76459 -3.21180 0.34544 0.81956 2.97744 3.27661 3.41652 3.48181 3.48867 3.59636 3.77622 3.86705 3.97097 4.22296 4.51424 4.63282 4.78968 4.97205 5.05058 5.06314 5.21553 5.30069 5.33499 5.45549 5.53511 5.61542 5.65392 5.70277 5.86896 5.92779 6.05972 6.11223 6.16903 6.23580 6.25999 6.30874 6.36339 6.42146 6.45340 6.59531 6.68741 6.74332 6.84322 7.02351 7.10464 7.26725 7.68483 7.73405 7.83486 7.85843 8.43595 8.49128 9.22387 9.86512 10.42019 11.31747 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.004023 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.552288 B = 6958.097768 C = 8459.466667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.117 3.883 7 H 0.085 0.915 8 N -0.713 5.713 9 C 0.563 3.437 10 O -0.512 6.512 11 C -0.228 4.228 12 C 0.182 3.818 13 N -0.529 5.529 14 C 0.311 3.689 15 N -0.523 5.523 16 C 0.265 3.735 17 C -0.120 4.120 18 C -0.164 4.164 19 C -0.147 4.147 20 C 0.169 3.831 21 N -0.583 5.583 22 C -0.254 4.254 23 H 0.071 0.929 24 C 0.008 3.992 25 N -0.900 5.900 26 Si 0.899 3.101 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.390 0.610 38 H 0.171 0.829 39 H 0.200 0.800 40 H 0.152 0.848 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.017 0.983 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.343 -4.307 -9.363 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.013 3.987 7 H 0.103 0.897 8 N -0.363 5.363 9 C 0.347 3.653 10 O -0.388 6.388 11 C -0.236 4.236 12 C 0.015 3.985 13 N -0.243 5.243 14 C 0.024 3.976 15 N -0.237 5.237 16 C 0.119 3.881 17 C -0.139 4.139 18 C -0.201 4.201 19 C -0.185 4.185 20 C 0.042 3.958 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.191 4.191 25 N -0.544 5.544 26 Si 0.729 3.271 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.224 0.776 38 H 0.188 0.812 39 H 0.216 0.784 40 H 0.169 0.831 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.035 0.965 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.847 -4.963 -8.755 15.545 hybrid contribution -0.841 0.182 0.377 0.939 sum 11.006 -4.781 -8.378 14.635 Atomic orbital electron populations 1.21803 0.95970 1.01389 1.00242 1.20494 0.93111 0.93555 0.87022 0.95729 1.22043 0.94167 1.01371 0.98962 1.21688 0.97558 0.99662 0.96614 1.22070 0.77030 1.01160 0.98485 0.89688 1.46002 1.08963 1.26401 1.54944 1.17650 0.85963 0.82166 0.79533 1.90785 1.62304 1.41799 1.43884 1.21727 0.96780 1.01006 1.04062 1.23454 0.88766 0.94383 0.91930 1.68414 1.13527 1.21798 1.20542 1.25146 1.01167 0.85066 0.86226 1.68251 1.05785 1.27659 1.21987 1.21002 0.89238 0.89983 0.87920 1.21351 1.00660 0.89054 1.02788 1.23016 1.00128 1.01531 0.95464 1.22854 1.02551 0.94582 0.98517 1.21067 0.83699 0.96861 0.94205 1.44016 1.02568 1.64813 1.19212 1.19153 0.95097 1.38122 0.85945 0.91180 1.25080 0.97816 0.99202 0.97033 1.70009 1.24299 1.43371 1.16697 0.86324 0.79771 0.80026 0.80963 1.21351 1.21847 1.20345 0.91970 0.94346 0.92807 0.92020 0.92617 0.92202 0.92995 0.77625 0.81183 0.78384 0.83084 0.87656 0.88346 0.87860 0.89227 0.88866 0.96470 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.95 37.16 0.30 -2.21 16 2 C 0.16 3.27 3.50 -67.60 -0.24 3.03 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.04 5.37 -26.61 -0.14 -2.18 16 5 C -0.12 -1.77 5.35 -26.69 -0.14 -1.92 16 6 C 0.12 2.15 2.60 -67.81 -0.18 1.97 16 7 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 8 N -0.71 -10.85 5.04 -54.63 -0.28 -11.12 16 9 C 0.56 9.42 7.72 -12.33 -0.10 9.33 16 10 O -0.51 -10.40 13.23 5.32 0.07 -10.32 16 11 C -0.23 -3.25 5.91 -104.69 -0.62 -3.87 16 12 C 0.18 2.12 10.80 -16.78 -0.18 1.94 16 13 N -0.53 -6.20 10.42 -14.24 -0.15 -6.35 16 14 C 0.31 3.42 12.27 -92.02 -1.13 2.29 16 15 N -0.52 -6.78 9.44 -10.48 -0.10 -6.88 16 16 C 0.26 3.84 6.53 -81.82 -0.53 3.30 16 17 C -0.12 -1.76 4.74 -91.78 -0.44 -2.20 16 18 C -0.16 -1.98 10.04 -26.73 -0.27 -2.25 16 19 C -0.15 -1.84 10.23 -26.73 -0.27 -2.11 16 20 C 0.17 3.93 4.86 -3.71 -0.02 3.91 16 21 N -0.58 -14.09 2.99 -164.78 -0.49 -14.58 16 22 C -0.25 -6.80 8.57 -15.06 -0.13 -6.93 16 23 H 0.07 1.84 6.24 -52.49 -0.33 1.51 16 24 C 0.01 0.22 4.93 -17.43 -0.09 0.13 16 25 N -0.90 -26.21 11.25 55.49 0.62 -25.59 16 26 Si 0.90 22.04 29.58 -169.99 -5.03 17.01 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 30 H 0.06 1.24 7.63 -51.93 -0.40 0.84 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.00 7.44 -51.93 -0.39 0.62 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 4.54 6.77 -40.82 -0.28 4.26 16 38 H 0.17 1.44 6.58 -52.49 -0.35 1.09 16 39 H 0.20 1.41 8.06 -52.48 -0.42 0.98 16 40 H 0.15 2.63 6.17 -51.93 -0.32 2.31 16 41 H 0.11 1.22 7.58 -51.93 -0.39 0.83 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.09 2.57 6.16 -51.93 -0.32 2.25 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -31.93 374.58 -10.82 -42.75 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.94 Total: 7.20 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -4.17 Total: 2.25 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -0.39 Total: -64.53 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.93 -10.82 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072037552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.095 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds