Wall clock time and date at job start Tue Mar 31 2020 16:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58611 * 2 1 4 4 C 1.53197 * 109.58437 * 239.57726 * 2 1 3 5 5 C 1.53040 * 109.31275 * 185.57481 * 4 2 1 6 6 C 1.53040 * 109.53390 * 61.36498 * 5 4 2 7 7 H 1.09001 * 109.52534 * 58.60748 * 6 5 4 8 8 N 1.46500 * 109.49328 * 178.68191 * 6 5 4 9 9 C 1.34781 * 119.99931 * 204.83389 * 8 6 5 10 10 O 1.21553 * 119.99931 * 0.02562 * 9 8 6 11 11 C 1.47837 * 119.99957 * 180.02562 * 9 8 6 12 12 C 1.39967 * 120.93802 * 354.32292 * 11 9 8 13 13 N 1.32130 * 118.92378 * 179.97438 * 12 11 9 14 14 C 1.31888 * 120.96371 * 359.97438 * 13 12 11 15 15 N 1.31851 * 122.09717 * 0.02562 * 14 13 12 16 16 C 1.32166 * 120.96869 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.53594 * 179.97438 * 16 15 14 18 18 C 1.52995 * 117.50095 * 359.44656 * 17 16 15 19 19 C 1.52999 * 117.49959 * 290.82045 * 17 16 15 20 20 C 1.53195 * 109.31544 * 298.63257 * 6 5 4 21 21 N 1.46921 * 109.58827 * 120.28853 * 2 1 3 22 22 C 1.36932 * 120.63053 * 353.37062 * 21 2 1 23 23 H 1.07995 * 120.00477 * 29.83296 * 22 21 2 24 24 C 1.38815 * 120.00130 * 209.82923 * 22 21 2 25 25 N 1.31625 * 119.99946 * 15.79382 * 24 22 21 26 26 Si 1.86795 * 120.00088 * 195.79227 * 24 22 21 27 27 H 1.48499 * 109.47262 * 94.96774 * 26 24 22 28 28 H 1.48508 * 109.46869 * 214.96039 * 26 24 22 29 29 H 1.48497 * 109.47274 * 334.96362 * 26 24 22 30 30 H 1.09002 * 109.46817 * 299.71289 * 1 2 3 31 31 H 1.09002 * 109.47863 * 59.71279 * 1 2 3 32 32 H 1.09003 * 109.47446 * 179.71635 * 1 2 3 33 33 H 1.09006 * 109.49607 * 305.52761 * 4 2 1 34 34 H 1.09000 * 109.49906 * 65.62065 * 4 2 1 35 35 H 1.08991 * 109.45764 * 301.34424 * 5 4 2 36 36 H 1.09001 * 109.45600 * 181.38271 * 5 4 2 37 37 H 0.96998 * 120.00155 * 24.84381 * 8 6 5 38 38 H 1.08002 * 120.54031 * 359.95781 * 12 11 9 39 39 H 1.08004 * 118.94960 * 179.97438 * 14 13 12 40 40 H 1.09006 * 115.54780 * 145.15570 * 17 16 15 41 41 H 1.08997 * 117.50060 * 359.97438 * 18 17 16 42 42 H 1.08996 * 117.49896 * 145.02339 * 18 17 16 43 43 H 1.08997 * 117.49966 * 214.98366 * 19 17 16 44 44 H 1.08998 * 117.50166 * 359.97438 * 19 17 16 45 45 H 1.09002 * 109.58415 * 174.42444 * 20 6 5 46 46 H 1.09000 * 109.58496 * 294.84969 * 20 6 5 47 47 H 0.96993 * 119.99855 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2446 5 6 3.5674 -0.8493 -1.1693 6 6 3.9568 -1.6656 0.0653 7 1 3.4987 -2.6531 0.0085 8 7 5.4142 -1.8052 0.1194 9 6 5.9677 -2.8454 0.7736 10 8 5.2577 -3.6680 1.3184 11 6 7.4383 -2.9859 0.8287 12 6 8.2714 -2.1193 0.1117 13 7 9.5804 -2.2807 0.1900 14 6 10.1029 -3.2396 0.9297 15 7 9.3553 -4.0774 1.6207 16 6 8.0368 -3.9884 1.6000 17 6 7.1918 -4.9516 2.3932 18 6 7.9181 -6.0290 3.2008 19 6 7.1573 -6.4090 1.9289 20 6 3.4650 -0.9453 1.3248 21 7 2.0225 -0.6981 1.1952 22 6 1.1538 -1.1101 2.1702 23 1 0.1397 -1.3772 1.9123 24 6 1.5766 -1.1844 3.4903 25 7 2.6846 -0.5787 3.8616 26 14 0.5730 -2.1440 4.7398 27 1 1.1164 -3.5209 4.8589 28 1 0.6472 -1.4669 6.0594 29 1 -0.8423 -2.2072 4.2947 30 1 -0.3633 0.5094 0.8926 31 1 -0.3635 0.5183 -0.8874 32 1 -0.3634 -1.0277 -0.0051 33 1 1.6029 -1.7269 -1.2893 34 1 1.7659 -0.1694 -2.1367 35 1 4.0060 0.1460 -1.0997 36 1 3.9376 -1.3473 -2.0655 37 1 5.9807 -1.1488 -0.3155 38 1 7.8510 -1.3317 -0.4961 39 1 11.1773 -3.3422 0.9699 40 1 6.2768 -4.5362 2.8159 41 1 9.0071 -6.0415 3.1582 42 1 7.4812 -6.3227 4.1552 43 1 6.2199 -6.9526 2.0465 44 1 7.7455 -6.6711 1.0495 45 1 3.6519 -1.5692 2.1989 46 1 3.9904 0.0037 1.4315 47 1 2.9798 -0.6304 4.7841 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072037552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:33 Heat of formation + Delta-G solvation = 42.655771 kcal Electronic energy + Delta-G solvation = -28982.142792 eV Core-core repulsion = 25165.713464 eV Total energy + Delta-G solvation = -3816.429327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.46189 -40.69129 -39.19907 -38.24284 -36.05250 -34.73977 -34.46994 -33.53590 -31.96183 -31.63534 -27.88680 -27.06591 -26.37183 -25.90812 -24.01849 -23.31263 -22.53181 -22.41180 -21.64012 -20.97274 -18.94090 -18.77697 -18.30577 -18.00295 -17.18077 -16.63749 -16.62443 -16.13047 -15.86010 -15.63950 -15.32728 -15.25179 -15.09096 -14.96751 -14.60429 -14.40637 -14.10778 -13.52509 -13.12739 -13.06836 -12.80510 -12.75129 -12.73592 -12.57450 -12.53146 -12.37979 -12.27219 -12.11094 -11.96188 -11.69731 -11.58616 -11.35574 -11.34503 -11.12993 -10.69024 -10.57757 -10.53447 -10.41702 -10.07920 -8.61546 -7.85822 -5.31746 -0.66208 -0.16476 1.40302 1.44634 1.50831 1.76523 2.03009 2.50027 2.55691 2.78664 2.94282 3.02887 3.25005 3.30622 3.53467 3.66584 3.78190 3.93724 3.96810 4.05729 4.09833 4.11050 4.26834 4.31171 4.40463 4.61738 4.65427 4.70111 4.72345 4.81499 4.89609 4.90144 5.01928 5.08519 5.09775 5.18419 5.20202 5.25138 5.31441 5.33964 5.45287 5.55651 5.62123 5.71136 5.75206 5.80189 6.40401 6.51607 6.87987 7.15017 7.21091 7.90451 8.39482 9.19197 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.004023 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.552288 B = 6958.097768 C = 8459.466667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.134 3.866 7 H 0.056 0.944 8 N -0.700 5.700 9 C 0.560 3.440 10 O -0.557 6.557 11 C -0.250 4.250 12 C 0.197 3.803 13 N -0.532 5.532 14 C 0.317 3.683 15 N -0.531 5.531 16 C 0.255 3.745 17 C -0.146 4.146 18 C -0.145 4.145 19 C -0.139 4.139 20 C 0.180 3.820 21 N -0.603 5.603 22 C -0.249 4.249 23 H 0.074 0.926 24 C -0.050 4.050 25 N -0.933 5.933 26 Si 0.953 3.047 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.261 1.261 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.411 0.589 38 H 0.204 0.796 39 H 0.240 0.760 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.041 0.959 46 H -0.002 1.002 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.626 -3.955 -12.235 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.028 3.972 7 H 0.075 0.925 8 N -0.352 5.352 9 C 0.346 3.654 10 O -0.436 6.436 11 C -0.258 4.258 12 C 0.030 3.970 13 N -0.246 5.246 14 C 0.032 3.968 15 N -0.245 5.245 16 C 0.110 3.890 17 C -0.165 4.165 18 C -0.182 4.182 19 C -0.177 4.177 20 C 0.053 3.947 21 N -0.327 5.327 22 C -0.380 4.380 23 H 0.092 0.908 24 C -0.246 4.246 25 N -0.579 5.579 26 Si 0.782 3.218 27 H -0.224 1.224 28 H -0.222 1.222 29 H -0.186 1.186 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.248 0.752 38 H 0.220 0.780 39 H 0.256 0.744 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.140 -4.588 -11.679 18.169 hybrid contribution -1.198 0.110 1.238 1.726 sum 11.942 -4.479 -10.441 16.483 Atomic orbital electron populations 1.21739 0.94900 1.01121 1.00987 1.20811 0.94204 0.93404 0.86774 0.96058 1.21947 0.94625 1.00888 0.98235 1.21667 0.97068 1.00096 0.95823 1.21560 0.78472 0.99441 0.97714 0.92548 1.45759 1.08009 1.26677 1.54750 1.18095 0.87092 0.81690 0.78501 1.90774 1.63674 1.43524 1.45609 1.21532 0.95210 1.02797 1.06271 1.23916 0.88574 0.93810 0.90710 1.68565 1.13136 1.22031 1.20841 1.26013 1.02691 0.83717 0.84427 1.68310 1.04867 1.28562 1.22799 1.21013 0.90052 0.89998 0.87952 1.21170 1.00324 0.90252 1.04772 1.23066 1.00434 0.99173 0.95551 1.22890 1.02769 0.92870 0.99181 1.20760 0.83759 0.95256 0.94946 1.44315 1.02543 1.65711 1.20109 1.19477 0.95534 1.36372 0.86569 0.90832 1.25755 0.99072 1.00823 0.98901 1.70162 1.26061 1.45472 1.16255 0.85454 0.79361 0.78078 0.78911 1.22407 1.22188 1.18568 0.94458 0.90317 0.93553 0.92857 0.88593 0.90657 0.89349 0.75175 0.77992 0.74436 0.86786 0.86703 0.87567 0.87914 0.88316 0.94022 0.98430 0.94739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 7.95 71.98 0.57 -4.01 16 2 C 0.15 5.90 3.50 44.98 0.16 6.06 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.12 -3.46 5.37 30.67 0.16 -3.29 16 5 C -0.11 -2.96 5.35 30.62 0.16 -2.80 16 6 C 0.13 4.92 2.60 45.07 0.12 5.03 16 7 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 8 N -0.70 -21.10 5.04 -445.03 -2.24 -23.35 16 9 C 0.56 19.39 7.72 86.78 0.67 20.06 16 10 O -0.56 -24.31 13.23 -3.88 -0.05 -24.36 16 11 C -0.25 -7.10 5.91 -19.91 -0.12 -7.21 16 12 C 0.20 4.17 10.80 85.07 0.92 5.09 16 13 N -0.53 -10.96 10.42 -198.97 -2.07 -13.04 16 14 C 0.32 6.12 12.27 180.84 2.22 8.34 16 15 N -0.53 -13.03 9.44 -187.06 -1.77 -14.80 16 16 C 0.26 7.45 6.53 42.92 0.28 7.73 16 17 C -0.15 -4.52 4.74 -11.54 -0.05 -4.57 16 18 C -0.15 -3.50 10.04 30.59 0.31 -3.20 16 19 C -0.14 -3.54 10.23 30.59 0.31 -3.23 16 20 C 0.18 8.73 4.86 86.36 0.42 9.15 16 21 N -0.60 -29.82 2.99 -675.24 -2.02 -31.84 16 22 C -0.25 -13.76 8.57 84.04 0.72 -13.04 16 23 H 0.07 3.93 6.24 -2.91 -0.02 3.91 16 24 C -0.05 -2.91 4.93 84.86 0.42 -2.49 16 25 N -0.93 -57.43 11.25 21.65 0.24 -57.19 16 26 Si 0.95 47.17 29.58 68.60 2.03 49.20 16 27 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 28 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 29 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 30 H 0.04 1.47 7.63 -2.39 -0.02 1.45 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.67 7.44 -2.39 -0.02 1.66 16 33 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.41 8.72 6.77 -92.71 -0.63 8.09 16 38 H 0.20 2.73 6.58 -2.91 -0.02 2.71 16 39 H 0.24 2.43 8.06 -2.91 -0.02 2.40 16 40 H 0.11 4.40 6.17 -2.38 -0.01 4.39 16 41 H 0.11 2.55 7.58 -2.39 -0.02 2.53 16 42 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.04 2.45 6.16 -2.39 -0.01 2.44 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -75.65 374.58 1.76 -73.89 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.37 Total: 23.86 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 7.27 Total: 17.62 kcal Atomic # 7 Polarization: -132.35 SS G_CDS: -7.85 Total: -140.21 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -75.65 1.76 -73.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072037552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.544 kcal (2) G-P(sol) polarization free energy of solvation -75.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds