Wall clock time and date at job start Tue Mar 31 2020 16:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.58419 * 2 1 4 4 C 1.53195 * 109.58438 * 120.27557 * 2 1 3 5 5 C 1.53039 * 109.31260 * 174.42136 * 4 2 1 6 6 C 1.53044 * 109.53864 * 298.63908 * 5 4 2 7 7 H 1.09000 * 109.49755 * 181.34939 * 6 5 4 8 8 N 1.46501 * 109.49527 * 301.41489 * 6 5 4 9 9 C 1.34781 * 119.99659 * 205.00055 * 8 6 5 10 10 O 1.21553 * 120.00048 * 359.97438 * 9 8 6 11 11 C 1.47832 * 119.99541 * 180.27107 * 9 8 6 12 12 C 1.39963 * 120.94274 * 354.37694 * 11 9 8 13 13 N 1.32137 * 118.92489 * 180.02562 * 12 11 9 14 14 C 1.31891 * 120.96359 * 359.97438 * 13 12 11 15 15 N 1.31849 * 122.09570 * 0.02925 * 14 13 12 16 16 C 1.32160 * 120.97044 * 359.65136 * 15 14 13 17 17 C 1.50702 * 120.54296 * 180.33043 * 16 15 14 18 18 C 1.52999 * 117.49667 * 1.20134 * 17 16 15 19 19 C 1.52994 * 117.50166 * 292.57634 * 17 16 15 20 20 C 1.53197 * 109.31224 * 61.36316 * 6 5 4 21 21 N 1.46918 * 109.58403 * 239.56621 * 2 1 3 22 22 C 1.36935 * 120.63430 * 6.62797 * 21 2 1 23 23 H 1.07994 * 119.99933 * 323.49661 * 22 21 2 24 24 C 1.38812 * 120.00084 * 143.50178 * 22 21 2 25 25 N 1.31627 * 119.99990 * 358.81221 * 24 22 21 26 26 Si 1.86802 * 120.00102 * 178.81071 * 24 22 21 27 27 H 1.48494 * 109.46968 * 59.99740 * 26 24 22 28 28 H 1.48498 * 109.47057 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.46737 * 299.99726 * 26 24 22 30 30 H 1.09002 * 109.47615 * 299.72142 * 1 2 3 31 31 H 1.08999 * 109.47090 * 59.72240 * 1 2 3 32 32 H 1.09000 * 109.47422 * 179.72251 * 1 2 3 33 33 H 1.08997 * 109.49359 * 54.47181 * 4 2 1 34 34 H 1.08995 * 109.49979 * 294.37441 * 4 2 1 35 35 H 1.08993 * 109.45860 * 178.61589 * 5 4 2 36 36 H 1.08996 * 109.44571 * 58.64878 * 5 4 2 37 37 H 0.96994 * 120.00130 * 24.99649 * 8 6 5 38 38 H 1.07994 * 120.53761 * 0.02650 * 12 11 9 39 39 H 1.07993 * 118.94846 * 180.02562 * 14 13 12 40 40 H 1.08998 * 115.55064 * 146.90022 * 17 16 15 41 41 H 1.09010 * 117.50001 * 359.97438 * 18 17 16 42 42 H 1.08996 * 117.50461 * 145.01888 * 18 17 16 43 43 H 1.08996 * 117.49875 * 214.97554 * 19 17 16 44 44 H 1.09006 * 117.49859 * 359.97438 * 19 17 16 45 45 H 1.08995 * 109.58446 * 65.15134 * 20 6 5 46 46 H 1.09002 * 109.58163 * 185.58067 * 20 6 5 47 47 H 0.96998 * 119.99874 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7277 1.2465 5 6 3.5674 -0.8464 1.1714 6 6 3.9569 -1.6658 -0.0611 7 1 5.0411 -1.7703 -0.1008 8 7 3.3404 -2.9924 0.0189 9 6 3.8970 -4.0343 -0.6301 10 8 4.9101 -3.8733 -1.2821 11 6 3.2715 -5.3717 -0.5542 12 6 2.1702 -5.6050 0.2775 13 7 1.6427 -6.8159 0.3149 14 6 2.1388 -7.7950 -0.4164 15 7 3.1747 -7.6190 -1.2129 16 6 3.7600 -6.4386 -1.3165 17 6 4.9389 -6.2465 -2.2355 18 6 5.4022 -7.4544 -3.0522 19 6 6.2419 -6.9612 -1.8721 20 6 3.4650 -0.9487 -1.3224 21 7 2.0224 -0.7012 -1.1935 22 6 1.1537 -1.1156 -2.1674 23 1 0.1753 -1.4842 -1.8970 24 6 1.5306 -1.0621 -3.5023 25 7 2.7142 -0.5911 -3.8336 26 14 0.3581 -1.6585 -4.8286 27 1 -0.8939 -0.8617 -4.7771 28 1 0.9941 -1.4966 -6.1607 29 1 0.0425 -3.0917 -4.6022 30 1 -0.3634 0.5095 0.8925 31 1 -0.3633 0.5181 -0.8875 32 1 -0.3634 -1.0276 -0.0050 33 1 1.6029 -1.7235 1.2937 34 1 1.7660 -0.1639 2.1371 35 1 3.9376 -1.3420 2.0688 36 1 4.0058 0.1489 1.0991 37 1 2.5318 -3.1208 0.5389 38 1 1.7583 -4.8082 0.8789 39 1 1.6819 -8.7720 -0.3610 40 1 5.0167 -5.2640 -2.7012 41 1 4.8547 -8.3884 -2.9244 42 1 5.7850 -7.2670 -4.0554 43 1 7.1769 -6.4491 -2.0990 44 1 6.2467 -7.5701 -0.9680 45 1 3.9903 0.0001 -1.4315 46 1 3.6518 -1.5748 -2.1949 47 1 2.9775 -0.5533 -4.7664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072037553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:37 Heat of formation + Delta-G solvation = 63.053893 kcal Electronic energy + Delta-G solvation = -29730.085192 eV Core-core repulsion = 25914.540394 eV Total energy + Delta-G solvation = -3815.544798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29232 -39.32393 -37.64894 -37.04385 -34.22864 -33.42021 -32.77190 -32.26981 -30.44219 -29.89201 -26.39929 -25.34385 -25.23604 -24.73206 -22.26661 -22.17312 -21.25947 -21.19359 -20.40646 -18.83709 -17.77071 -17.63502 -16.84926 -16.29620 -15.46050 -15.37429 -15.00992 -14.89124 -14.32708 -14.13258 -14.02224 -13.84040 -13.73655 -13.42814 -13.15949 -12.84131 -12.53551 -12.05603 -11.84108 -11.60620 -11.47790 -11.30840 -11.24078 -11.17879 -10.93720 -10.91720 -10.76959 -10.48879 -10.41785 -10.37195 -10.21524 -9.98756 -9.58975 -9.54817 -9.38160 -9.31122 -9.21705 -8.48250 -8.41549 -6.51695 -5.78192 -3.31795 0.50566 0.96756 3.13326 3.35506 3.41272 3.42247 3.50020 3.73908 3.91537 4.02259 4.10954 4.33629 4.46165 4.79621 4.94196 5.07329 5.13298 5.19688 5.29177 5.31794 5.34485 5.42727 5.49367 5.53993 5.71432 5.79274 5.93530 5.98184 6.07456 6.12718 6.22648 6.24781 6.29973 6.33663 6.39178 6.42839 6.48655 6.57300 6.65733 6.85683 6.88909 7.04055 7.09662 7.36120 7.71670 7.79942 7.92862 8.00019 8.52080 8.62914 9.23321 9.83350 10.43115 11.28548 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010525 B = 0.004921 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.806452 B = 5688.130978 C = 6407.726616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.078 0.922 8 N -0.691 5.691 9 C 0.566 3.434 10 O -0.527 6.527 11 C -0.223 4.223 12 C 0.184 3.816 13 N -0.529 5.529 14 C 0.309 3.691 15 N -0.525 5.525 16 C 0.262 3.738 17 C -0.117 4.117 18 C -0.165 4.165 19 C -0.148 4.148 20 C 0.163 3.837 21 N -0.583 5.583 22 C -0.252 4.252 23 H 0.063 0.937 24 C 0.013 3.987 25 N -0.899 5.899 26 Si 0.896 3.104 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.392 0.608 38 H 0.169 0.831 39 H 0.198 0.802 40 H 0.153 0.847 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.026 0.974 46 H 0.100 0.900 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 -9.112 9.801 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.096 0.904 8 N -0.341 5.341 9 C 0.351 3.649 10 O -0.405 6.405 11 C -0.231 4.231 12 C 0.017 3.983 13 N -0.242 5.242 14 C 0.022 3.978 15 N -0.238 5.238 16 C 0.116 3.884 17 C -0.136 4.136 18 C -0.202 4.202 19 C -0.186 4.186 20 C 0.036 3.964 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.080 0.920 24 C -0.186 4.186 25 N -0.542 5.542 26 Si 0.726 3.274 27 H -0.208 1.208 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.228 0.772 38 H 0.186 0.814 39 H 0.215 0.785 40 H 0.170 0.830 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.107 0.893 45 H 0.044 0.956 46 H 0.118 0.882 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.721 -9.836 9.211 13.747 hybrid contribution -0.881 0.522 -0.508 1.143 sum 1.840 -9.313 8.703 12.879 Atomic orbital electron populations 1.21779 0.96118 1.01186 1.00123 1.20483 0.92881 0.93649 0.87150 0.95726 1.22077 0.95141 1.00555 0.99263 1.21698 0.97021 1.00247 0.96751 1.21891 0.97008 0.81285 0.98613 0.90411 1.45763 1.29027 1.08635 1.50706 1.17555 0.84252 0.83093 0.80011 1.90705 1.24869 1.84519 1.40424 1.21712 1.00930 0.97473 1.02939 1.23424 0.88732 0.94243 0.91916 1.68400 1.31245 1.00993 1.23604 1.25097 0.88205 0.98428 0.86119 1.68214 1.10818 1.24130 1.20678 1.20969 0.91833 0.86620 0.89004 1.21373 0.91329 1.00020 1.00883 1.23011 1.03030 0.98322 0.95883 1.22838 0.93892 1.02285 0.99583 1.21242 0.83881 0.97078 0.94195 1.43963 1.02588 1.64622 1.19431 1.18932 0.97670 1.36459 0.85168 0.91982 1.25297 0.96783 0.98902 0.97639 1.69889 1.19067 1.48441 1.16783 0.86490 0.80787 0.78539 0.81625 1.20837 1.21564 1.21172 0.94490 0.92051 0.93067 0.92924 0.92792 0.93033 0.90963 0.77234 0.81361 0.78509 0.82972 0.87703 0.88434 0.88007 0.89274 0.95631 0.88238 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.01 37.16 0.30 -2.07 16 2 C 0.17 3.12 3.50 -67.60 -0.24 2.88 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.97 5.21 -26.61 -0.14 -2.11 16 5 C -0.12 -1.76 5.59 -26.69 -0.15 -1.91 16 6 C 0.12 2.10 2.81 -67.81 -0.19 1.91 16 7 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 8 N -0.69 -11.61 4.87 -54.63 -0.27 -11.87 16 9 C 0.57 10.21 7.72 -12.33 -0.10 10.12 16 10 O -0.53 -10.78 13.20 5.32 0.07 -10.71 16 11 C -0.22 -3.60 5.91 -104.69 -0.62 -4.21 16 12 C 0.18 2.57 10.80 -16.77 -0.18 2.39 16 13 N -0.53 -7.25 10.42 -14.25 -0.15 -7.40 16 14 C 0.31 3.92 12.27 -92.02 -1.13 2.79 16 15 N -0.52 -7.58 9.44 -10.48 -0.10 -7.68 16 16 C 0.26 4.18 6.53 -81.81 -0.53 3.65 16 17 C -0.12 -1.82 4.80 -91.77 -0.44 -2.26 16 18 C -0.17 -2.10 10.04 -26.73 -0.27 -2.37 16 19 C -0.15 -1.89 10.23 -26.73 -0.27 -2.16 16 20 C 0.16 3.70 4.82 -3.70 -0.02 3.68 16 21 N -0.58 -13.30 2.90 -164.78 -0.48 -13.78 16 22 C -0.25 -6.47 8.40 -15.06 -0.13 -6.60 16 23 H 0.06 1.57 6.42 -52.49 -0.34 1.24 16 24 C 0.01 0.36 5.22 -17.43 -0.09 0.27 16 25 N -0.90 -25.63 10.94 55.49 0.61 -25.03 16 26 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.20 7.71 -51.93 -0.40 0.80 16 32 H 0.05 0.90 7.37 -51.93 -0.38 0.52 16 33 H 0.05 0.77 6.40 -51.93 -0.33 0.43 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.39 5.84 4.94 -40.82 -0.20 5.64 16 38 H 0.17 1.93 6.57 -52.49 -0.35 1.59 16 39 H 0.20 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.15 2.76 6.08 -51.93 -0.32 2.44 16 41 H 0.10 1.31 7.58 -51.92 -0.39 0.92 16 42 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 2.69 6.20 -51.93 -0.32 2.36 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -30.31 371.00 -10.73 -41.04 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.79 Total: 9.14 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -4.19 Total: 4.00 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -0.38 Total: -65.76 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.31 -10.73 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072037553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.091 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds