Wall clock time and date at job start Tue Mar 31 2020 16:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.58419 * 2 1 4 4 C 1.53195 * 109.58438 * 120.27557 * 2 1 3 5 5 C 1.53039 * 109.31260 * 174.42136 * 4 2 1 6 6 C 1.53044 * 109.53864 * 298.63908 * 5 4 2 7 7 H 1.09000 * 109.49755 * 181.34939 * 6 5 4 8 8 N 1.46501 * 109.49527 * 301.41489 * 6 5 4 9 9 C 1.34781 * 119.99659 * 205.00055 * 8 6 5 10 10 O 1.21553 * 120.00048 * 359.97438 * 9 8 6 11 11 C 1.47832 * 119.99541 * 180.27107 * 9 8 6 12 12 C 1.39963 * 120.94274 * 354.37694 * 11 9 8 13 13 N 1.32137 * 118.92489 * 180.02562 * 12 11 9 14 14 C 1.31891 * 120.96359 * 359.97438 * 13 12 11 15 15 N 1.31849 * 122.09570 * 0.02925 * 14 13 12 16 16 C 1.32160 * 120.97044 * 359.65136 * 15 14 13 17 17 C 1.50702 * 120.54296 * 180.33043 * 16 15 14 18 18 C 1.52999 * 117.49667 * 1.20134 * 17 16 15 19 19 C 1.52994 * 117.50166 * 292.57634 * 17 16 15 20 20 C 1.53197 * 109.31224 * 61.36316 * 6 5 4 21 21 N 1.46918 * 109.58403 * 239.56621 * 2 1 3 22 22 C 1.36935 * 120.63430 * 6.62797 * 21 2 1 23 23 H 1.07994 * 119.99933 * 323.49661 * 22 21 2 24 24 C 1.38812 * 120.00084 * 143.50178 * 22 21 2 25 25 N 1.31627 * 119.99990 * 358.81221 * 24 22 21 26 26 Si 1.86802 * 120.00102 * 178.81071 * 24 22 21 27 27 H 1.48494 * 109.46968 * 59.99740 * 26 24 22 28 28 H 1.48498 * 109.47057 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.46737 * 299.99726 * 26 24 22 30 30 H 1.09002 * 109.47615 * 299.72142 * 1 2 3 31 31 H 1.08999 * 109.47090 * 59.72240 * 1 2 3 32 32 H 1.09000 * 109.47422 * 179.72251 * 1 2 3 33 33 H 1.08997 * 109.49359 * 54.47181 * 4 2 1 34 34 H 1.08995 * 109.49979 * 294.37441 * 4 2 1 35 35 H 1.08993 * 109.45860 * 178.61589 * 5 4 2 36 36 H 1.08996 * 109.44571 * 58.64878 * 5 4 2 37 37 H 0.96994 * 120.00130 * 24.99649 * 8 6 5 38 38 H 1.07994 * 120.53761 * 0.02650 * 12 11 9 39 39 H 1.07993 * 118.94846 * 180.02562 * 14 13 12 40 40 H 1.08998 * 115.55064 * 146.90022 * 17 16 15 41 41 H 1.09010 * 117.50001 * 359.97438 * 18 17 16 42 42 H 1.08996 * 117.50461 * 145.01888 * 18 17 16 43 43 H 1.08996 * 117.49875 * 214.97554 * 19 17 16 44 44 H 1.09006 * 117.49859 * 359.97438 * 19 17 16 45 45 H 1.08995 * 109.58446 * 65.15134 * 20 6 5 46 46 H 1.09002 * 109.58163 * 185.58067 * 20 6 5 47 47 H 0.96998 * 119.99874 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7277 1.2465 5 6 3.5674 -0.8464 1.1714 6 6 3.9569 -1.6658 -0.0611 7 1 5.0411 -1.7703 -0.1008 8 7 3.3404 -2.9924 0.0189 9 6 3.8970 -4.0343 -0.6301 10 8 4.9101 -3.8733 -1.2821 11 6 3.2715 -5.3717 -0.5542 12 6 2.1702 -5.6050 0.2775 13 7 1.6427 -6.8159 0.3149 14 6 2.1388 -7.7950 -0.4164 15 7 3.1747 -7.6190 -1.2129 16 6 3.7600 -6.4386 -1.3165 17 6 4.9389 -6.2465 -2.2355 18 6 5.4022 -7.4544 -3.0522 19 6 6.2419 -6.9612 -1.8721 20 6 3.4650 -0.9487 -1.3224 21 7 2.0224 -0.7012 -1.1935 22 6 1.1537 -1.1156 -2.1674 23 1 0.1753 -1.4842 -1.8970 24 6 1.5306 -1.0621 -3.5023 25 7 2.7142 -0.5911 -3.8336 26 14 0.3581 -1.6585 -4.8286 27 1 -0.8939 -0.8617 -4.7771 28 1 0.9941 -1.4966 -6.1607 29 1 0.0425 -3.0917 -4.6022 30 1 -0.3634 0.5095 0.8925 31 1 -0.3633 0.5181 -0.8875 32 1 -0.3634 -1.0276 -0.0050 33 1 1.6029 -1.7235 1.2937 34 1 1.7660 -0.1639 2.1371 35 1 3.9376 -1.3420 2.0688 36 1 4.0058 0.1489 1.0991 37 1 2.5318 -3.1208 0.5389 38 1 1.7583 -4.8082 0.8789 39 1 1.6819 -8.7720 -0.3610 40 1 5.0167 -5.2640 -2.7012 41 1 4.8547 -8.3884 -2.9244 42 1 5.7850 -7.2670 -4.0554 43 1 7.1769 -6.4491 -2.0990 44 1 6.2467 -7.5701 -0.9680 45 1 3.9903 0.0001 -1.4315 46 1 3.6518 -1.5748 -2.1949 47 1 2.9775 -0.5533 -4.7664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072037553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:36 Heat of formation + Delta-G solvation = 45.474889 kcal Electronic energy + Delta-G solvation = -29730.847475 eV Core-core repulsion = 25914.540394 eV Total energy + Delta-G solvation = -3816.307081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.42810 -40.73257 -39.10635 -38.18666 -35.79974 -34.64624 -34.37850 -33.50475 -31.86731 -31.62554 -27.92233 -26.95948 -26.35303 -26.08356 -23.84002 -23.29759 -22.53518 -22.40963 -21.89420 -20.39500 -19.02414 -18.81053 -18.15447 -17.91687 -17.09459 -16.60945 -16.44840 -16.11677 -15.86304 -15.65389 -15.34712 -15.17387 -15.06078 -14.77587 -14.50218 -14.37852 -14.00759 -13.63059 -13.08327 -13.00101 -12.81123 -12.77351 -12.59500 -12.56486 -12.51274 -12.44909 -12.34690 -12.14651 -12.08123 -11.57503 -11.55255 -11.32784 -11.18758 -11.06466 -10.66149 -10.51933 -10.48899 -10.40553 -9.91343 -8.44052 -7.81356 -5.35944 -0.62241 -0.14920 1.39628 1.40106 1.45841 1.83125 2.20239 2.47651 2.59714 2.81641 2.98716 3.04532 3.26345 3.34666 3.62783 3.67293 3.76962 3.96847 4.03049 4.10132 4.12264 4.14385 4.21420 4.32630 4.53436 4.66978 4.68878 4.72704 4.77609 4.85026 4.91596 5.00307 5.07105 5.09371 5.15079 5.16290 5.21051 5.28784 5.30111 5.35607 5.60276 5.63316 5.70017 5.75337 5.77085 5.82167 6.50037 6.59328 6.89338 7.22745 7.27336 7.93676 8.46720 9.21740 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010525 B = 0.004921 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.806452 B = 5688.130978 C = 6407.726616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.154 3.846 3 H 0.013 0.987 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.129 3.871 7 H 0.070 0.930 8 N -0.683 5.683 9 C 0.562 3.438 10 O -0.561 6.561 11 C -0.249 4.249 12 C 0.194 3.806 13 N -0.533 5.533 14 C 0.314 3.686 15 N -0.531 5.531 16 C 0.253 3.747 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.134 4.134 20 C 0.173 3.827 21 N -0.595 5.595 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.046 4.046 25 N -0.933 5.933 26 Si 0.947 3.053 27 H -0.272 1.272 28 H -0.301 1.301 29 H -0.286 1.286 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.404 0.596 38 H 0.194 0.806 39 H 0.239 0.761 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.097 0.903 45 H -0.004 1.004 46 H 0.051 0.949 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.765 -10.708 12.757 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.031 0.969 4 C -0.159 4.159 5 C -0.149 4.149 6 C 0.023 3.977 7 H 0.088 0.912 8 N -0.334 5.334 9 C 0.348 3.652 10 O -0.441 6.441 11 C -0.256 4.256 12 C 0.026 3.974 13 N -0.247 5.247 14 C 0.028 3.972 15 N -0.245 5.245 16 C 0.107 3.893 17 C -0.166 4.166 18 C -0.185 4.185 19 C -0.172 4.172 20 C 0.046 3.954 21 N -0.319 5.319 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.242 4.242 25 N -0.579 5.579 26 Si 0.777 3.223 27 H -0.198 1.198 28 H -0.228 1.228 29 H -0.212 1.212 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.241 0.759 38 H 0.210 0.790 39 H 0.255 0.745 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.014 0.986 46 H 0.069 0.931 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.081 -11.438 12.215 16.769 hybrid contribution -0.409 1.010 -1.398 1.772 sum 0.672 -10.428 10.817 15.040 Atomic orbital electron populations 1.21712 0.94865 1.01272 1.00659 1.20771 0.94022 0.93214 0.87089 0.96910 1.21972 0.94781 1.01060 0.98111 1.21672 0.97231 0.99950 0.96021 1.21568 0.96488 0.81852 0.97832 0.91243 1.45629 1.29353 1.07835 1.50566 1.17947 0.83925 0.84096 0.79264 1.90696 1.26492 1.85221 1.41702 1.21608 1.02547 0.96475 1.05003 1.23783 0.87504 0.95094 0.90971 1.68533 1.31209 1.00961 1.23959 1.25982 0.87108 0.99709 0.84420 1.68288 1.11544 1.23249 1.21436 1.21075 0.91960 0.87298 0.88957 1.21212 0.93181 0.99502 1.02712 1.23069 1.02097 0.97064 0.96301 1.22895 0.92983 1.01311 0.99966 1.20885 0.84209 0.95281 0.95061 1.44156 1.02121 1.65309 1.20276 1.19222 0.97774 1.34193 0.85588 0.91347 1.25938 0.97987 1.00526 0.99732 1.70086 1.20710 1.51092 1.15992 0.85658 0.79475 0.78007 0.79205 1.19756 1.22769 1.21213 0.90723 0.94839 0.93064 0.91834 0.89176 0.89514 0.90829 0.75869 0.78953 0.74476 0.86463 0.87038 0.87442 0.87395 0.88422 0.98587 0.93086 0.94738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.01 71.98 0.58 -3.60 16 2 C 0.15 5.58 3.50 44.98 0.16 5.73 16 3 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 4 C -0.12 -3.15 5.21 30.67 0.16 -2.99 16 5 C -0.11 -2.97 5.59 30.62 0.17 -2.80 16 6 C 0.13 4.60 2.81 45.07 0.13 4.73 16 7 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 8 N -0.68 -22.52 4.87 -445.03 -2.17 -24.69 16 9 C 0.56 20.67 7.72 86.78 0.67 21.34 16 10 O -0.56 -24.29 13.20 -3.88 -0.05 -24.35 16 11 C -0.25 -7.94 5.91 -19.91 -0.12 -8.06 16 12 C 0.19 5.02 10.80 85.07 0.92 5.94 16 13 N -0.53 -13.13 10.42 -198.98 -2.07 -15.21 16 14 C 0.31 7.10 12.27 180.84 2.22 9.31 16 15 N -0.53 -14.51 9.44 -187.06 -1.77 -16.27 16 16 C 0.25 8.04 6.53 42.92 0.28 8.32 16 17 C -0.15 -4.71 4.80 -11.54 -0.06 -4.76 16 18 C -0.15 -3.70 10.04 30.59 0.31 -3.39 16 19 C -0.13 -3.38 10.23 30.59 0.31 -3.07 16 20 C 0.17 8.19 4.82 86.36 0.42 8.61 16 21 N -0.59 -27.40 2.90 -675.23 -1.96 -29.36 16 22 C -0.24 -12.30 8.40 84.03 0.71 -11.60 16 23 H 0.07 3.43 6.42 -2.91 -0.02 3.41 16 24 C -0.05 -2.60 5.22 84.86 0.44 -2.16 16 25 N -0.93 -56.27 10.94 21.65 0.24 -56.03 16 26 Si 0.95 45.96 29.55 68.60 2.03 47.98 16 27 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 28 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 29 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 1.26 7.71 -2.39 -0.02 1.24 16 32 H 0.05 1.66 7.37 -2.39 -0.02 1.64 16 33 H 0.06 1.56 6.40 -2.39 -0.02 1.54 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.40 11.12 4.94 -92.71 -0.46 10.66 16 38 H 0.19 3.83 6.57 -2.91 -0.02 3.81 16 39 H 0.24 3.15 8.06 -2.91 -0.02 3.12 16 40 H 0.12 4.61 6.08 -2.39 -0.01 4.60 16 41 H 0.11 2.64 7.58 -2.38 -0.02 2.62 16 42 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 45 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.05 2.94 6.20 -2.39 -0.01 2.92 16 47 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -70.70 371.00 2.08 -68.62 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.54 Total: 27.74 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 7.29 Total: 21.57 kcal Atomic # 7 Polarization: -133.83 SS G_CDS: -7.73 Total: -141.56 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.35 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -70.70 2.08 -68.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072037553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.093 kcal (2) G-P(sol) polarization free energy of solvation -70.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds