Wall clock time and date at job start Tue Mar 31 2020 17:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.99806 * 2 1 4 4 C 1.54337 * 109.77972 * 121.16082 * 2 1 3 5 5 H 1.08996 * 110.67103 * 215.88097 * 4 2 1 6 6 N 1.46496 * 110.84800 * 339.03086 * 4 2 1 7 7 C 1.36936 * 119.99876 * 200.14279 * 6 4 2 8 8 H 1.08001 * 120.00050 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99884 * 180.02562 * 7 6 4 10 10 N 1.31612 * 120.00105 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99606 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47535 * 60.00064 * 11 9 7 13 13 H 1.48500 * 109.46851 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47290 * 299.99632 * 11 9 7 15 15 C 1.55163 * 103.01616 * 97.49882 * 4 2 1 16 16 C 1.54905 * 101.58156 * 35.30896 * 15 4 2 17 17 N 1.47015 * 109.88529 * 238.90255 * 2 1 3 18 18 C 1.34780 * 125.64941 * 59.55803 * 17 2 1 19 19 O 1.21279 * 119.99881 * 359.72322 * 18 17 2 20 20 C 1.50701 * 120.00355 * 179.71567 * 18 17 2 21 21 H 1.09000 * 109.62722 * 60.40450 * 20 18 17 22 22 C 1.53229 * 109.84468 * 181.09340 * 20 18 17 23 23 C 1.52810 * 108.56125 * 189.76802 * 22 20 18 24 24 C 1.50445 * 110.28914 * 308.68630 * 23 22 20 25 25 N 1.32889 * 118.53596 * 197.76501 * 24 23 22 26 26 C 1.31603 * 121.06763 * 180.21891 * 25 24 23 27 27 N 1.31814 * 121.66489 * 0.03701 * 26 25 24 28 28 C 1.32187 * 120.64762 * 359.87915 * 27 26 25 29 29 C 1.37764 * 122.58026 * 17.82432 * 24 23 22 30 30 C 1.50342 * 122.80359 * 359.33575 * 29 24 23 31 31 H 1.08999 * 109.46988 * 179.64493 * 1 2 3 32 32 H 1.09001 * 109.47501 * 299.64684 * 1 2 3 33 33 H 1.09003 * 109.47103 * 59.64536 * 1 2 3 34 34 H 0.96997 * 120.00094 * 20.14587 * 6 4 2 35 35 H 0.97004 * 120.00136 * 179.97438 * 10 9 7 36 36 H 1.08998 * 111.00203 * 277.23180 * 15 4 2 37 37 H 1.09000 * 111.00006 * 153.38315 * 15 4 2 38 38 H 1.09002 * 110.36471 * 204.14795 * 16 15 4 39 39 H 1.08997 * 110.36645 * 81.82957 * 16 15 4 40 40 H 1.09001 * 109.76458 * 69.95428 * 22 20 18 41 41 H 1.09000 * 109.45517 * 309.39765 * 22 20 18 42 42 H 1.09002 * 109.30966 * 188.48146 * 23 22 20 43 43 H 1.09001 * 109.30855 * 68.88388 * 23 22 20 44 44 H 1.07994 * 119.16918 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.37241 * 180.02562 * 28 27 26 46 46 H 1.09002 * 109.30508 * 137.88295 * 30 29 24 47 47 H 1.08995 * 109.31183 * 257.29225 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2428 5 1 2.9600 -0.2827 1.6226 6 7 1.0257 -0.8100 2.2863 7 6 1.3838 -1.0485 3.5863 8 1 2.4229 -1.1940 3.8422 9 6 0.4110 -1.1045 4.5750 10 7 -0.8554 -0.9287 4.2629 11 14 0.8996 -1.4292 6.3485 12 1 1.8210 -0.3608 6.8118 13 1 -0.3153 -1.4405 7.2025 14 1 1.5813 -2.7453 6.4411 15 6 2.3561 -2.1697 0.6915 16 6 2.8613 -1.8465 -0.7368 17 7 2.0300 -0.7141 -1.1838 18 6 1.7754 -0.3845 -2.4657 19 8 1.0747 0.5727 -2.7180 20 6 2.3613 -1.2054 -3.5854 21 1 2.0069 -2.2334 -3.5101 22 6 1.9479 -0.6124 -4.9365 23 6 2.3452 -1.5923 -6.0398 24 6 3.7904 -1.9840 -5.8940 25 7 4.4086 -2.5293 -6.9363 26 6 5.6708 -2.8945 -6.8625 27 7 6.3732 -2.7372 -5.7583 28 6 5.8253 -2.2002 -4.6819 29 6 4.4944 -1.8003 -4.7241 30 6 3.8868 -1.1803 -3.4967 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3634 0.5083 0.8931 33 1 -0.3633 0.5193 -0.8868 34 1 0.0924 -0.6797 2.0564 35 1 -1.5352 -0.9681 4.9538 36 1 1.4522 -2.7778 0.6580 37 1 3.1328 -2.6591 1.2792 38 1 2.7179 -2.7048 -1.3931 39 1 3.9123 -1.5588 -0.7114 40 1 2.4555 0.3396 -5.0921 41 1 0.8685 -0.4619 -4.9519 42 1 2.1957 -1.1211 -7.0113 43 1 1.7216 -2.4837 -5.9719 44 1 6.1430 -3.3343 -7.7285 45 1 6.4051 -2.0730 -3.7796 46 1 4.2058 -1.7377 -2.6159 47 1 4.2258 -0.1482 -3.4087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074681689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:17 Heat of formation + Delta-G solvation = 25.052904 kcal Electronic energy + Delta-G solvation = -28523.776563 eV Core-core repulsion = 24706.583918 eV Total energy + Delta-G solvation = -3817.192645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73316 -40.27133 -38.02716 -36.68119 -34.53261 -34.14750 -31.96251 -31.70559 -30.83110 -30.45848 -28.75663 -25.69275 -25.29404 -24.66081 -23.49775 -23.35450 -22.62176 -20.88398 -19.55178 -18.75482 -17.96832 -17.53194 -17.31198 -16.81550 -16.04356 -15.65180 -15.26980 -14.86372 -14.61644 -14.48334 -14.18939 -14.07211 -13.95570 -13.66552 -13.50431 -13.32024 -12.88282 -12.62124 -12.44963 -12.23060 -12.01085 -11.81142 -11.57724 -11.46442 -11.30205 -11.18172 -11.11954 -10.99846 -10.84318 -10.71634 -10.49615 -10.28054 -10.04815 -9.76473 -9.56357 -9.53530 -9.47065 -8.98860 -8.47016 -7.07060 -5.85587 -3.15671 0.55646 0.70487 2.67334 3.04297 3.38576 3.40005 3.43533 3.44537 3.65707 3.86170 4.06086 4.17025 4.27045 4.43907 4.51359 4.62513 4.86599 4.91540 4.94840 4.99402 5.06849 5.17941 5.21840 5.24448 5.31293 5.43162 5.47504 5.50532 5.52184 5.58419 5.70735 5.76253 5.80338 5.92858 5.99087 6.06325 6.09730 6.17513 6.26180 6.50441 6.51171 6.64364 6.65816 6.78238 6.93798 7.61652 7.69502 7.74910 8.26055 8.33037 9.44505 9.99352 10.34051 11.36738 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.002552 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.702124 B =10970.352546 C =11839.607373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.071 0.929 4 C 0.174 3.826 5 H 0.062 0.938 6 N -0.717 5.717 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.154 4.154 16 C 0.095 3.905 17 N -0.607 5.607 18 C 0.533 3.467 19 O -0.539 6.539 20 C -0.104 4.104 21 H 0.101 0.899 22 C -0.099 4.099 23 C -0.074 4.074 24 C 0.181 3.819 25 N -0.522 5.522 26 C 0.288 3.712 27 N -0.523 5.523 28 C 0.152 3.848 29 C -0.176 4.176 30 C -0.070 4.070 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.391 0.609 35 H 0.257 0.743 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.195 0.805 45 H 0.169 0.831 46 H 0.093 0.907 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 -3.128 -20.398 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.089 0.911 4 C 0.062 3.938 5 H 0.080 0.920 6 N -0.361 5.361 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.196 4.196 16 C -0.028 4.028 17 N -0.340 5.340 18 C 0.320 3.680 19 O -0.416 6.416 20 C -0.126 4.126 21 H 0.119 0.881 22 C -0.137 4.137 23 C -0.111 4.111 24 C 0.037 3.963 25 N -0.236 5.236 26 C 0.000 4.000 27 N -0.236 5.236 28 C -0.015 4.015 29 C -0.180 4.180 30 C -0.108 4.108 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.229 0.771 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.211 0.789 45 H 0.187 0.813 46 H 0.112 0.888 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.958 -3.018 -21.228 24.079 hybrid contribution -0.250 -0.055 1.677 1.697 sum 10.708 -3.073 -19.550 22.502 Atomic orbital electron populations 1.21998 0.94538 1.02425 1.02695 1.21837 0.95450 0.95721 0.84508 0.91051 1.21172 0.93209 0.91992 0.87443 0.91988 1.42662 1.05129 1.85286 1.02995 1.19180 0.92952 1.41520 0.84039 0.91127 1.24756 0.95291 1.02412 0.98159 1.69643 0.99280 1.56147 1.32771 0.86254 0.77041 0.78067 0.84700 1.21191 1.21678 1.21229 1.23572 1.01724 1.01413 0.92870 1.22478 0.94409 0.88526 0.97394 1.48617 1.49883 1.30502 1.05028 1.19982 0.80881 0.84903 0.82201 1.90690 1.38719 1.28968 1.83205 1.21293 0.95627 1.01075 0.94564 0.88139 1.21414 1.03326 0.98108 0.90873 1.20499 0.89115 1.00580 1.00923 1.21410 0.96807 0.90175 0.87904 1.68405 1.11803 1.12334 1.31029 1.24900 0.86793 0.92824 0.95518 1.68421 1.39580 1.14934 1.00668 1.23313 0.91589 0.89821 0.96824 1.21126 0.96556 1.02730 0.97586 1.20449 0.93455 1.02010 0.94930 0.92538 0.90258 0.92120 0.77088 0.93288 0.90639 0.90574 0.91337 0.91488 0.90648 0.89203 0.88650 0.88886 0.78857 0.81344 0.88838 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 7.93 37.15 0.29 -2.56 16 2 C 0.13 2.13 3.49 -66.95 -0.23 1.89 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.17 3.14 3.45 -66.09 -0.23 2.91 16 5 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 6 N -0.72 -16.74 5.02 -51.64 -0.26 -17.00 16 7 C -0.25 -6.43 9.98 -15.06 -0.15 -6.58 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.10 13.06 55.49 0.72 -26.38 16 11 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 15 C -0.15 -2.33 6.77 -24.58 -0.17 -2.49 16 16 C 0.10 1.08 5.13 -2.53 -0.01 1.06 16 17 N -0.61 -8.28 3.08 -163.02 -0.50 -8.78 16 18 C 0.53 7.15 6.99 -10.98 -0.08 7.07 16 19 O -0.54 -9.09 14.74 5.56 0.08 -9.01 16 20 C -0.10 -0.99 1.89 -91.74 -0.17 -1.16 16 21 H 0.10 0.87 7.83 -51.93 -0.41 0.46 16 22 C -0.10 -0.88 4.71 -26.71 -0.13 -1.01 16 23 C -0.07 -0.58 5.96 -28.10 -0.17 -0.74 16 24 C 0.18 1.69 6.62 -82.43 -0.55 1.14 16 25 N -0.52 -5.24 10.32 -11.00 -0.11 -5.36 16 26 C 0.29 2.60 12.29 -92.30 -1.13 1.46 16 27 N -0.52 -5.05 10.44 -14.55 -0.15 -5.21 16 28 C 0.15 1.27 10.94 -17.11 -0.19 1.08 16 29 C -0.18 -1.50 5.73 -104.68 -0.60 -2.10 16 30 C -0.07 -0.55 4.69 -28.14 -0.13 -0.69 16 31 H 0.06 1.04 8.05 -51.93 -0.42 0.63 16 32 H 0.08 1.57 6.73 -51.93 -0.35 1.22 16 33 H 0.06 1.09 6.74 -51.93 -0.35 0.74 16 34 H 0.39 9.72 4.94 -40.82 -0.20 9.51 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.64 7.28 -51.93 -0.38 0.26 16 39 H 0.07 0.62 7.28 -51.93 -0.38 0.24 16 40 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.09 0.87 7.80 -51.93 -0.40 0.46 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.09 0.63 5.33 -51.93 -0.28 0.36 16 47 H 0.09 0.73 8.11 -51.93 -0.42 0.30 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -31.91 368.89 -10.35 -42.26 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.93 Total: 8.44 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.74 Total: -1.06 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.30 Total: -62.72 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.91 -10.35 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074681689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.316 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds