Wall clock time and date at job start Tue Mar 31 2020 17:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.99806 * 2 1 4 4 C 1.54337 * 109.77972 * 121.16082 * 2 1 3 5 5 H 1.08996 * 110.67103 * 215.88097 * 4 2 1 6 6 N 1.46496 * 110.84800 * 339.03086 * 4 2 1 7 7 C 1.36936 * 119.99876 * 200.14279 * 6 4 2 8 8 H 1.08001 * 120.00050 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99884 * 180.02562 * 7 6 4 10 10 N 1.31612 * 120.00105 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99606 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47535 * 60.00064 * 11 9 7 13 13 H 1.48500 * 109.46851 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47290 * 299.99632 * 11 9 7 15 15 C 1.55163 * 103.01616 * 97.49882 * 4 2 1 16 16 C 1.54905 * 101.58156 * 35.30896 * 15 4 2 17 17 N 1.47015 * 109.88529 * 238.90255 * 2 1 3 18 18 C 1.34780 * 125.64941 * 59.55803 * 17 2 1 19 19 O 1.21279 * 119.99881 * 359.72322 * 18 17 2 20 20 C 1.50701 * 120.00355 * 179.71567 * 18 17 2 21 21 H 1.09000 * 109.62722 * 60.40450 * 20 18 17 22 22 C 1.53229 * 109.84468 * 181.09340 * 20 18 17 23 23 C 1.52810 * 108.56125 * 189.76802 * 22 20 18 24 24 C 1.50445 * 110.28914 * 308.68630 * 23 22 20 25 25 N 1.32889 * 118.53596 * 197.76501 * 24 23 22 26 26 C 1.31603 * 121.06763 * 180.21891 * 25 24 23 27 27 N 1.31814 * 121.66489 * 0.03701 * 26 25 24 28 28 C 1.32187 * 120.64762 * 359.87915 * 27 26 25 29 29 C 1.37764 * 122.58026 * 17.82432 * 24 23 22 30 30 C 1.50342 * 122.80359 * 359.33575 * 29 24 23 31 31 H 1.08999 * 109.46988 * 179.64493 * 1 2 3 32 32 H 1.09001 * 109.47501 * 299.64684 * 1 2 3 33 33 H 1.09003 * 109.47103 * 59.64536 * 1 2 3 34 34 H 0.96997 * 120.00094 * 20.14587 * 6 4 2 35 35 H 0.97004 * 120.00136 * 179.97438 * 10 9 7 36 36 H 1.08998 * 111.00203 * 277.23180 * 15 4 2 37 37 H 1.09000 * 111.00006 * 153.38315 * 15 4 2 38 38 H 1.09002 * 110.36471 * 204.14795 * 16 15 4 39 39 H 1.08997 * 110.36645 * 81.82957 * 16 15 4 40 40 H 1.09001 * 109.76458 * 69.95428 * 22 20 18 41 41 H 1.09000 * 109.45517 * 309.39765 * 22 20 18 42 42 H 1.09002 * 109.30966 * 188.48146 * 23 22 20 43 43 H 1.09001 * 109.30855 * 68.88388 * 23 22 20 44 44 H 1.07994 * 119.16918 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.37241 * 180.02562 * 28 27 26 46 46 H 1.09002 * 109.30508 * 137.88295 * 30 29 24 47 47 H 1.08995 * 109.31183 * 257.29225 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2428 5 1 2.9600 -0.2827 1.6226 6 7 1.0257 -0.8100 2.2863 7 6 1.3838 -1.0485 3.5863 8 1 2.4229 -1.1940 3.8422 9 6 0.4110 -1.1045 4.5750 10 7 -0.8554 -0.9287 4.2629 11 14 0.8996 -1.4292 6.3485 12 1 1.8210 -0.3608 6.8118 13 1 -0.3153 -1.4405 7.2025 14 1 1.5813 -2.7453 6.4411 15 6 2.3561 -2.1697 0.6915 16 6 2.8613 -1.8465 -0.7368 17 7 2.0300 -0.7141 -1.1838 18 6 1.7754 -0.3845 -2.4657 19 8 1.0747 0.5727 -2.7180 20 6 2.3613 -1.2054 -3.5854 21 1 2.0069 -2.2334 -3.5101 22 6 1.9479 -0.6124 -4.9365 23 6 2.3452 -1.5923 -6.0398 24 6 3.7904 -1.9840 -5.8940 25 7 4.4086 -2.5293 -6.9363 26 6 5.6708 -2.8945 -6.8625 27 7 6.3732 -2.7372 -5.7583 28 6 5.8253 -2.2002 -4.6819 29 6 4.4944 -1.8003 -4.7241 30 6 3.8868 -1.1803 -3.4967 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3634 0.5083 0.8931 33 1 -0.3633 0.5193 -0.8868 34 1 0.0924 -0.6797 2.0564 35 1 -1.5352 -0.9681 4.9538 36 1 1.4522 -2.7778 0.6580 37 1 3.1328 -2.6591 1.2792 38 1 2.7179 -2.7048 -1.3931 39 1 3.9123 -1.5588 -0.7114 40 1 2.4555 0.3396 -5.0921 41 1 0.8685 -0.4619 -4.9519 42 1 2.1957 -1.1211 -7.0113 43 1 1.7216 -2.4837 -5.9719 44 1 6.1430 -3.3343 -7.7285 45 1 6.4051 -2.0730 -3.7796 46 1 4.2058 -1.7377 -2.6159 47 1 4.2258 -0.1482 -3.4087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074681689.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:16 Heat of formation + Delta-G solvation = 6.011241 kcal Electronic energy + Delta-G solvation = -28524.602272 eV Core-core repulsion = 24706.583918 eV Total energy + Delta-G solvation = -3818.018353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.40619 -41.34749 -39.18271 -37.57219 -35.94301 -35.05699 -33.48971 -32.44957 -32.11208 -31.47755 -30.18136 -26.80620 -26.40669 -25.64480 -24.99383 -24.09496 -23.62870 -21.79375 -20.68980 -19.90170 -19.40944 -18.69578 -18.07916 -17.68042 -17.08279 -16.86093 -16.42160 -16.04592 -15.71376 -15.61318 -15.34332 -15.02672 -14.80915 -14.62235 -14.55732 -14.32729 -14.09491 -13.84709 -13.53094 -13.24728 -13.11486 -13.01900 -12.93903 -12.83739 -12.71193 -12.50669 -12.20447 -12.11303 -12.03030 -11.89385 -11.80700 -11.54945 -11.49445 -11.36280 -10.88440 -10.67033 -10.18280 -10.14832 -9.62458 -8.98619 -7.91984 -5.20581 -0.06491 0.07702 1.50519 1.52722 1.58589 1.63124 1.95113 2.59264 2.76932 3.04138 3.25549 3.36070 3.42274 3.47736 3.60228 3.69367 3.80400 3.83527 3.97636 4.00840 4.21788 4.23283 4.29594 4.33830 4.40086 4.43785 4.46479 4.56831 4.58490 4.66948 4.70615 4.80470 4.82343 4.88175 4.91800 5.07525 5.09157 5.11937 5.23313 5.24318 5.29479 5.36952 5.49435 5.53865 5.57866 6.02189 6.29770 6.61958 7.12165 7.18210 7.37132 8.12058 8.34481 9.31553 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.002552 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.702124 B =10970.352546 C =11839.607373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.135 3.865 3 H 0.065 0.935 4 C 0.165 3.835 5 H 0.067 0.933 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.082 0.918 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.971 3.029 12 H -0.279 1.279 13 H -0.302 1.302 14 H -0.276 1.276 15 C -0.147 4.147 16 C 0.102 3.898 17 N -0.606 5.606 18 C 0.531 3.469 19 O -0.578 6.578 20 C -0.095 4.095 21 H 0.117 0.883 22 C -0.094 4.094 23 C -0.066 4.066 24 C 0.167 3.833 25 N -0.541 5.541 26 C 0.280 3.720 27 N -0.540 5.540 28 C 0.150 3.850 29 C -0.176 4.176 30 C -0.062 4.062 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.380 0.620 35 H 0.249 0.751 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.217 0.783 45 H 0.196 0.804 46 H 0.113 0.887 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.558 -4.419 -21.282 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.084 0.916 4 C 0.055 3.945 5 H 0.085 0.915 6 N -0.376 5.376 7 C -0.368 4.368 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.622 5.622 11 Si 0.801 3.199 12 H -0.205 1.205 13 H -0.228 1.228 14 H -0.202 1.202 15 C -0.187 4.187 16 C -0.020 4.020 17 N -0.339 5.339 18 C 0.321 3.679 19 O -0.458 6.458 20 C -0.116 4.116 21 H 0.135 0.865 22 C -0.132 4.132 23 C -0.103 4.103 24 C 0.024 3.976 25 N -0.255 5.255 26 C -0.007 4.007 27 N -0.254 5.254 28 C -0.016 4.016 29 C -0.180 4.180 30 C -0.100 4.100 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.216 0.784 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.233 0.767 45 H 0.213 0.787 46 H 0.131 0.869 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.709 -4.333 -22.149 26.406 hybrid contribution -1.043 0.387 1.856 2.164 sum 12.666 -3.946 -20.293 24.245 Atomic orbital electron populations 1.21816 0.96027 1.01260 1.01166 1.21541 0.94098 0.95765 0.85532 0.91648 1.21401 0.91972 0.94342 0.86797 0.91480 1.42858 1.05770 1.85516 1.03484 1.19610 0.93245 1.38797 0.85176 0.90022 1.25538 0.95389 1.03901 1.02028 1.69812 1.00249 1.58783 1.33385 0.85239 0.76231 0.78293 0.80145 1.20476 1.22834 1.20211 1.23373 1.01363 0.98555 0.95451 1.22661 0.95437 0.88709 0.95212 1.48629 1.50081 1.30820 1.04343 1.20694 0.80073 0.84595 0.82554 1.90680 1.40491 1.30908 1.83728 1.21277 0.96744 1.00866 0.92692 0.86474 1.21335 1.02590 0.98109 0.91189 1.20440 0.88773 1.00597 1.00524 1.21651 0.97340 0.90345 0.88279 1.68430 1.12395 1.13168 1.31532 1.25391 0.86634 0.92469 0.96224 1.68489 1.39988 1.15688 1.01250 1.23782 0.91705 0.88778 0.97375 1.21136 0.96721 1.02795 0.97380 1.20410 0.91784 1.02358 0.95455 0.93470 0.92795 0.92436 0.78435 0.94176 0.92801 0.89366 0.88226 0.88040 0.91474 0.90216 0.88306 0.87893 0.76708 0.78695 0.86866 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 7.93 71.98 0.57 -4.80 16 2 C 0.14 4.41 3.49 45.35 0.16 4.57 16 3 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.16 5.78 3.45 46.19 0.16 5.94 16 5 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 6 N -0.73 -34.56 5.02 -317.31 -1.59 -36.16 16 7 C -0.24 -12.32 9.98 84.03 0.84 -11.48 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 10 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 11 Si 0.97 44.58 29.55 68.60 2.03 46.61 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 15 C -0.15 -4.06 6.77 31.99 0.22 -3.84 16 16 C 0.10 1.88 5.13 86.85 0.45 2.33 16 17 N -0.61 -15.18 3.08 -788.07 -2.42 -17.61 16 18 C 0.53 13.29 6.99 87.66 0.61 13.90 16 19 O -0.58 -19.30 14.74 -3.03 -0.04 -19.35 16 20 C -0.09 -1.53 1.89 -11.52 -0.02 -1.55 16 21 H 0.12 1.57 7.83 -2.39 -0.02 1.55 16 22 C -0.09 -1.53 4.71 30.61 0.14 -1.39 16 23 C -0.07 -0.91 5.96 29.70 0.18 -0.73 16 24 C 0.17 2.74 6.62 42.21 0.28 3.02 16 25 N -0.54 -9.85 10.32 -188.73 -1.95 -11.80 16 26 C 0.28 4.49 12.29 180.94 2.22 6.72 16 27 N -0.54 -9.10 10.44 -199.93 -2.09 -11.19 16 28 C 0.15 2.02 10.94 84.83 0.93 2.94 16 29 C -0.18 -2.45 5.73 -19.90 -0.11 -2.56 16 30 C -0.06 -0.75 4.69 29.68 0.14 -0.61 16 31 H 0.05 1.80 8.05 -2.39 -0.02 1.78 16 32 H 0.05 2.26 6.73 -2.39 -0.02 2.24 16 33 H 0.06 2.14 6.74 -2.39 -0.02 2.12 16 34 H 0.38 19.51 4.94 -92.71 -0.46 19.06 16 35 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.10 1.33 7.28 -2.39 -0.02 1.31 16 39 H 0.10 1.29 7.28 -2.39 -0.02 1.27 16 40 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 41 H 0.08 1.48 7.80 -2.39 -0.02 1.46 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.22 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.11 0.92 5.33 -2.39 -0.01 0.91 16 47 H 0.09 1.14 8.11 -2.39 -0.02 1.12 16 Total: -1.00 -70.99 368.89 1.97 -69.03 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.53 Total: 29.69 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 7.22 Total: 8.70 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -7.77 Total: -134.68 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.04 Total: -19.35 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.99 1.97 -69.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074681689.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.036 kcal (2) G-P(sol) polarization free energy of solvation -70.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds