Wall clock time and date at job start Tue Mar 31 2020 17:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.91694 * 2 1 4 4 C 1.54910 * 111.00416 * 236.09276 * 2 1 3 5 5 N 1.47420 * 104.83035 * 204.91869 * 4 2 1 6 6 C 1.36943 * 125.64281 * 204.16534 * 5 4 2 7 7 H 1.08008 * 119.99833 * 179.97438 * 6 5 4 8 8 C 1.38808 * 120.00477 * 359.95630 * 6 5 4 9 9 N 1.31624 * 119.99592 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00136 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47276 * 60.00490 * 10 8 6 12 12 H 1.48501 * 109.46866 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47032 * 299.99833 * 10 8 6 14 14 C 1.47022 * 108.70821 * 24.12937 * 5 4 2 15 15 C 1.54322 * 107.26619 * 358.94281 * 14 5 4 16 16 H 1.08997 * 110.72528 * 96.34774 * 15 14 5 17 17 N 1.46512 * 110.71695 * 219.44451 * 15 14 5 18 18 C 1.34770 * 119.99646 * 273.54465 * 17 15 14 19 19 O 1.21281 * 120.00244 * 0.02562 * 18 17 15 20 20 C 1.50698 * 120.00019 * 179.97438 * 18 17 15 21 21 C 1.53006 * 109.47184 * 300.00531 * 20 18 17 22 22 C 1.52999 * 109.47150 * 59.99974 * 20 18 17 23 23 C 1.52997 * 109.47317 * 180.02562 * 22 20 18 24 24 C 1.52995 * 109.47310 * 299.99815 * 23 22 20 25 25 F 1.39895 * 109.47470 * 300.00377 * 24 23 22 26 26 F 1.39898 * 109.47140 * 179.97438 * 24 23 22 27 27 C 1.53002 * 109.46602 * 60.00177 * 24 23 22 28 28 C 1.52997 * 109.47342 * 180.02562 * 20 18 17 29 29 H 1.09004 * 109.46768 * 296.10279 * 1 2 3 30 30 H 1.09000 * 109.47126 * 56.09935 * 1 2 3 31 31 H 1.08996 * 109.47134 * 176.10289 * 1 2 3 32 32 H 1.08999 * 110.36706 * 86.07854 * 4 2 1 33 33 H 1.08998 * 110.36540 * 323.75624 * 4 2 1 34 34 H 0.96998 * 119.99694 * 179.97438 * 9 8 6 35 35 H 1.08993 * 109.88028 * 239.52397 * 14 5 4 36 36 H 1.09003 * 109.88012 * 118.35741 * 14 5 4 37 37 H 0.96992 * 119.99836 * 93.54577 * 17 15 14 38 38 H 1.09001 * 109.47002 * 299.99404 * 21 20 18 39 39 H 1.08993 * 109.46955 * 59.99842 * 21 20 18 40 40 H 1.09000 * 109.47050 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.47362 * 300.00765 * 22 20 18 42 42 H 1.09002 * 109.46716 * 60.00124 * 22 20 18 43 43 H 1.09001 * 109.46832 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.47153 * 60.00359 * 23 22 20 45 45 H 1.09004 * 109.46930 * 179.97438 * 27 24 23 46 46 H 1.09002 * 109.47067 * 59.99942 * 27 24 23 47 47 H 1.09001 * 109.47230 * 299.99432 * 28 20 18 48 48 H 1.09001 * 109.47375 * 60.00270 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4644 -1.5655 -1.6071 7 1 5.4132 -1.8751 -1.1940 8 6 4.2965 -1.4948 -2.9831 9 7 3.1404 -1.1174 -3.4865 10 14 5.7113 -1.9353 -4.1205 11 1 6.1194 -3.3428 -3.8809 12 1 5.2786 -1.7784 -5.5324 13 1 6.8608 -1.0340 -3.8526 14 6 3.4675 -1.2742 0.6962 15 6 2.0862 -0.8079 1.2023 16 1 1.4478 -1.6631 1.4240 17 7 2.2287 0.0497 2.3815 18 6 2.3021 -0.5003 3.6097 19 8 2.2508 -1.7051 3.7387 20 6 2.4493 0.3818 4.8227 21 6 3.7376 1.1989 4.7059 22 6 1.2511 1.3289 4.9130 23 6 1.4008 2.2249 6.1441 24 6 1.4604 1.3567 7.4025 25 9 0.2826 0.6096 7.5099 26 9 1.5979 2.1760 8.5281 27 6 2.6587 0.4096 7.3122 28 6 2.5092 -0.4869 6.0808 29 1 -0.3633 0.4522 0.9229 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3633 -1.0252 -0.0698 32 1 2.1560 -0.1722 -2.0836 33 1 1.4519 -1.6705 -1.4023 34 1 3.0232 -1.0677 -4.4481 35 1 4.2426 -0.5998 1.0600 36 1 3.6650 -2.2894 1.0402 37 1 2.2701 1.0132 2.2783 38 1 4.5913 0.5242 4.6416 39 1 3.6952 1.8177 3.8096 40 1 3.8438 1.8372 5.5830 41 1 1.2088 1.9477 4.0166 42 1 0.3334 0.7468 4.9962 43 1 0.5470 2.8993 6.2086 44 1 2.3186 2.8070 6.0604 45 1 2.7015 -0.2086 8.2090 46 1 3.5764 0.9917 7.2285 47 1 1.5916 -1.0692 6.1643 48 1 3.3631 -1.1613 6.0163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079981904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:09 Heat of formation + Delta-G solvation = -131.717697 kcal Electronic energy + Delta-G solvation = -30004.863740 eV Core-core repulsion = 25730.183825 eV Total energy + Delta-G solvation = -4274.679915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.23268 -47.21421 -40.59797 -38.31180 -37.06440 -34.13404 -32.59956 -31.56645 -31.37461 -30.78853 -27.45319 -27.12185 -25.76495 -24.14648 -23.56063 -23.00902 -21.03878 -20.03002 -19.87636 -18.85728 -17.74585 -17.29410 -16.84533 -16.58208 -16.51851 -16.17980 -15.14133 -15.05050 -14.54047 -14.39398 -14.01415 -13.95050 -13.78069 -13.49893 -13.44486 -13.22183 -12.99619 -12.91954 -12.77677 -12.64670 -12.51178 -12.03426 -11.92447 -11.88034 -11.81471 -11.57961 -11.36884 -11.35558 -11.00688 -10.92280 -10.82948 -10.65768 -10.43773 -10.28584 -10.10566 -9.83016 -9.63819 -9.39897 -8.73399 -8.67579 -6.85945 -5.67687 -3.09376 2.73487 3.24252 3.39655 3.43894 3.44515 3.45225 3.72329 4.01010 4.02865 4.36893 4.47431 4.51678 4.66256 4.68865 4.84288 4.86867 5.07031 5.14448 5.23023 5.30738 5.35806 5.37361 5.45435 5.46887 5.54028 5.56756 5.60889 5.64363 5.72409 5.78199 5.92948 5.93362 6.04345 6.08829 6.13578 6.38363 6.44033 6.53836 6.61275 6.73166 7.01396 7.46910 7.59447 7.68517 7.82315 8.31385 8.38880 9.19712 9.80178 10.44305 11.36233 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.026268 B = 0.002647 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.668939 B =10575.204157 C =11021.195855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 H 0.072 0.928 4 C 0.160 3.840 5 N -0.604 5.604 6 C -0.222 4.222 7 H 0.077 0.923 8 C -0.011 4.011 9 N -0.924 5.924 10 Si 0.916 3.084 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.129 3.871 15 C 0.136 3.864 16 H 0.090 0.910 17 N -0.712 5.712 18 C 0.522 3.478 19 O -0.537 6.537 20 C -0.082 4.082 21 C -0.148 4.148 22 C -0.107 4.107 23 C -0.157 4.157 24 C 0.287 3.713 25 F -0.198 7.198 26 F -0.205 7.205 27 C -0.160 4.160 28 C -0.094 4.094 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.110 0.890 33 H 0.016 0.984 34 H 0.253 0.747 35 H 0.024 0.976 36 H 0.026 0.974 37 H 0.396 0.604 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 9.544 19.900 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 H 0.091 0.909 4 C 0.035 3.965 5 N -0.330 5.330 6 C -0.350 4.350 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.572 5.572 10 Si 0.746 3.254 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.212 1.212 14 C 0.002 3.998 15 C 0.031 3.969 16 H 0.108 0.892 17 N -0.362 5.362 18 C 0.307 3.693 19 O -0.413 6.413 20 C -0.086 4.086 21 C -0.205 4.205 22 C -0.145 4.145 23 C -0.195 4.195 24 C 0.251 3.749 25 F -0.179 7.179 26 F -0.186 7.186 27 C -0.198 4.198 28 C -0.132 4.132 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.034 0.966 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.116 0.884 47 H 0.100 0.900 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.268 8.637 19.773 21.995 hybrid contribution 0.654 0.199 -0.464 0.826 sum -3.614 8.836 19.309 21.540 Atomic orbital electron populations 1.21641 0.95138 1.01757 1.00619 1.22917 0.95054 0.99618 0.96887 0.90928 1.21995 0.84160 0.96008 0.94324 1.44428 1.10517 1.79147 0.98887 1.19040 0.90961 1.37833 0.87171 0.90556 1.24778 0.97326 1.01964 0.96553 1.69758 1.22406 1.53887 1.11166 0.86136 0.81154 0.78248 0.79867 1.21190 1.21546 1.21183 1.21597 0.93872 0.97949 0.86358 1.22166 0.97863 0.93481 0.83353 0.89150 1.46060 1.73872 1.10309 1.05979 1.20266 0.76127 0.88680 0.84191 1.90711 1.49487 1.14908 1.86217 1.20860 0.97339 0.95983 0.94373 1.22002 0.95758 0.99971 1.02759 1.21560 0.98063 0.97198 0.97696 1.22548 1.05741 0.98576 0.92655 1.21145 0.83774 0.85908 0.84103 1.93004 1.50610 1.77738 1.96566 1.93004 1.96056 1.74131 1.55360 1.22622 0.97030 0.98808 1.01298 1.21351 1.05009 0.96753 0.90089 0.93712 0.92490 0.92737 0.87267 0.96611 0.93643 0.95771 0.95603 0.76925 0.91398 0.91545 0.91216 0.89744 0.90128 0.89116 0.88202 0.89182 0.88416 0.90021 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.31 37.16 0.35 -1.62 16 2 C -0.12 -2.18 3.25 -88.47 -0.29 -2.47 16 3 H 0.07 1.21 8.00 -51.93 -0.42 0.80 16 4 C 0.16 3.76 5.36 -2.53 -0.01 3.75 16 5 N -0.60 -15.40 3.39 -170.08 -0.58 -15.98 16 6 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 7 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 9 N -0.92 -26.48 10.09 55.49 0.56 -25.92 16 10 Si 0.92 21.96 29.55 -169.99 -5.02 16.93 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.13 2.79 6.99 -3.07 -0.02 2.77 16 15 C 0.14 2.38 2.70 -66.09 -0.18 2.21 16 16 H 0.09 1.73 7.60 -51.93 -0.39 1.33 16 17 N -0.71 -9.62 4.92 -52.03 -0.26 -9.88 16 18 C 0.52 7.17 6.48 -10.99 -0.07 7.10 16 19 O -0.54 -9.66 15.71 5.56 0.09 -9.58 16 20 C -0.08 -0.78 0.61 -155.66 -0.10 -0.87 16 21 C -0.15 -1.13 7.67 37.16 0.29 -0.84 16 22 C -0.11 -0.84 4.51 -26.73 -0.12 -0.96 16 23 C -0.16 -1.06 5.18 -26.73 -0.14 -1.20 16 24 C 0.29 2.47 2.10 -26.73 -0.06 2.42 16 25 F -0.20 -2.15 16.03 2.25 0.04 -2.11 16 26 F -0.20 -2.00 17.06 2.25 0.04 -1.96 16 27 C -0.16 -1.21 5.18 -26.70 -0.14 -1.35 16 28 C -0.09 -0.90 3.90 -26.70 -0.10 -1.01 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 33 H 0.02 0.40 7.98 -51.93 -0.41 -0.01 16 34 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.02 0.52 8.03 -51.93 -0.42 0.10 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.40 4.29 7.35 -40.82 -0.30 3.99 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.47 7.56 -51.93 -0.39 0.08 16 40 H 0.07 0.39 4.80 -51.93 -0.25 0.14 16 41 H 0.08 0.54 7.56 -51.93 -0.39 0.15 16 42 H 0.08 0.73 7.80 -51.93 -0.41 0.33 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.51 6.43 -51.93 -0.33 0.18 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.58 6.43 -51.93 -0.33 0.25 16 47 H 0.08 0.92 7.76 -51.93 -0.40 0.51 16 48 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -32.06 371.42 -8.06 -40.12 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.68 Total: 1.59 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.84 Total: 1.19 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.27 Total: -51.77 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.07 Total: -4.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.06 -8.06 -40.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079981904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.601 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds